Wall clock time and date at job start Sun Mar 29 2020 23:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48496 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47191 * 300.00318 * 3 2 1 6 6 H 1.48504 * 109.47058 * 59.99868 * 3 2 1 7 7 C 1.37882 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46944 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 H 1.09001 * 109.25459 * 324.74640 * 13 12 10 15 15 C 1.52737 * 109.25521 * 205.27760 * 13 12 10 16 16 C 1.53330 * 108.37675 * 188.63876 * 15 13 12 17 17 C 1.52742 * 108.37002 * 69.92036 * 16 15 13 18 18 C 1.50629 * 110.59076 * 308.94477 * 17 16 15 19 19 C 1.38920 * 117.74881 * 197.46758 * 18 17 16 20 20 C 1.37928 * 120.54548 * 180.24190 * 19 18 17 21 21 C 1.38266 * 119.77145 * 359.97438 * 20 19 18 22 22 C 1.37926 * 119.76963 * 359.89729 * 21 20 19 23 23 C 1.37658 * 122.57017 * 17.53560 * 18 17 16 24 24 H 0.97004 * 119.99534 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46601 * 60.00062 * 9 7 2 26 26 H 1.08993 * 109.46922 * 300.00362 * 9 7 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 1.08995 * 109.68554 * 308.36362 * 15 13 12 29 29 H 1.09009 * 109.68081 * 68.92059 * 15 13 12 30 30 H 1.08993 * 109.68954 * 189.64400 * 16 15 13 31 31 H 1.08998 * 109.68187 * 310.21003 * 16 15 13 32 32 H 1.09004 * 109.25051 * 69.23416 * 17 16 15 33 33 H 1.09004 * 109.25159 * 188.65524 * 17 16 15 34 34 H 1.08003 * 119.72618 * 0.21901 * 19 18 17 35 35 H 1.07997 * 120.10906 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.10732 * 179.87834 * 21 20 19 37 37 H 1.08005 * 119.72418 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4226 -3.4231 0.0009 12 7 1.7809 -4.9153 0.0029 13 6 2.7328 -6.0288 -0.0034 14 1 3.6018 -5.7555 -0.6020 15 6 2.0656 -7.2584 -0.6164 16 6 2.9943 -8.4621 -0.4173 17 6 3.0131 -8.8149 1.0687 18 6 3.3055 -7.5931 1.8996 19 6 3.7223 -7.7870 3.2106 20 6 4.0008 -6.7087 4.0243 21 6 3.8649 -5.4239 3.5320 22 6 3.4537 -5.2293 2.2299 23 6 3.1731 -6.3139 1.4086 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 0.8272 -5.0925 0.0037 28 1 1.1125 -7.4442 -0.1213 29 1 1.9008 -7.0940 -1.6814 30 1 2.6235 -9.3110 -0.9916 31 1 4.0016 -8.2071 -0.7468 32 1 2.0423 -9.2200 1.3542 33 1 3.7825 -9.5656 1.2501 34 1 3.8287 -8.7903 3.5958 35 1 4.3239 -6.8676 5.0425 36 1 4.0796 -4.5756 4.1651 37 1 3.3482 -4.2253 1.8460 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143188735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:26 Heat of formation + Delta-G solvation = -30.629759 kcal Electronic energy + Delta-G solvation = -19095.869533 eV Core-core repulsion = 16222.916656 eV Total energy + Delta-G solvation = -2872.952877 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29691 -38.31478 -36.14244 -33.83623 -32.92647 -31.04772 -30.11777 -29.05774 -27.81241 -24.06263 -22.96803 -22.68825 -21.61885 -19.67703 -19.31071 -16.71306 -16.34967 -15.96049 -15.61424 -15.17997 -14.94872 -14.44321 -14.30044 -13.82816 -13.59363 -13.01741 -12.79530 -12.63923 -12.45735 -12.11467 -12.02085 -11.60181 -11.34221 -11.18751 -10.98067 -10.78565 -10.63963 -10.52217 -10.31213 -9.93914 -9.25550 -8.75697 -8.56739 -8.45726 -8.40642 -8.36769 -6.05851 -4.05301 1.53480 1.62600 3.33500 3.40690 3.48962 3.65195 3.80329 4.08494 4.49208 4.63842 4.73546 4.91292 5.03666 5.12664 5.21113 5.32627 5.35435 5.46642 5.52596 5.59646 5.71030 5.78835 5.89209 5.92564 6.06866 6.16466 6.25062 6.33734 6.40680 6.66808 6.82163 6.85231 7.09633 7.19684 7.26887 7.32359 7.95955 8.05434 8.43286 9.06013 9.19988 9.59973 11.06580 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.005149 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.199870 B = 5437.129399 C = 6063.339837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.076 0.924 9 C 0.004 3.996 10 C 0.515 3.485 11 O -0.542 6.542 12 N -0.742 5.742 13 C 0.184 3.816 14 H 0.093 0.907 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.078 4.078 18 C -0.078 4.078 19 C -0.134 4.134 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.100 4.100 23 C -0.088 4.088 24 H 0.261 0.739 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.397 0.603 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -18.250 2.971 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.094 0.906 9 C -0.036 4.036 10 C 0.306 3.694 11 O -0.418 6.418 12 N -0.395 5.395 13 C 0.078 3.922 14 H 0.111 0.889 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.115 4.115 18 C -0.079 4.079 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.118 4.118 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.231 0.769 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.860 -17.934 2.957 18.581 hybrid contribution -0.112 0.852 0.200 0.882 sum 3.748 -17.082 3.158 17.771 Atomic orbital electron populations 1.69971 1.06049 1.26781 1.51236 1.25007 0.94893 0.99481 0.95236 0.86394 0.80346 0.83052 0.77460 1.19474 1.21022 1.21030 1.21202 0.94281 0.89069 1.49980 0.90596 1.19260 0.94194 0.90580 0.99520 1.22032 0.91174 0.83504 0.72689 1.90537 1.17889 1.84581 1.48834 1.46456 1.09362 1.05602 1.78067 1.19594 0.93637 0.86716 0.92213 0.88931 1.21803 0.99156 0.93975 1.01296 1.21505 1.00354 0.97696 0.95815 1.20462 1.01878 0.95021 0.94179 1.19569 1.00064 0.93786 0.94445 1.21009 1.01886 0.98525 0.93760 1.21032 1.00647 0.92928 0.99376 1.21149 1.00497 0.96921 0.96075 1.21868 0.95760 1.00760 0.93421 1.20059 1.00174 0.92317 0.96391 0.92978 0.93433 0.93441 0.76924 0.91108 0.90768 0.91135 0.91350 0.90811 0.90999 0.86688 0.86579 0.86285 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.12 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.59 8.92 -34.44 -0.31 -14.90 16 8 H 0.08 2.28 6.75 -52.49 -0.35 1.93 16 9 C 0.00 0.09 5.46 -29.04 -0.16 -0.07 16 10 C 0.52 11.44 6.35 -10.99 -0.07 11.37 16 11 O -0.54 -13.61 13.21 5.55 0.07 -13.54 16 12 N -0.74 -12.70 4.85 -55.10 -0.27 -12.96 16 13 C 0.18 2.80 2.59 -69.25 -0.18 2.62 16 14 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 15 C -0.12 -1.39 5.43 -26.70 -0.14 -1.53 16 16 C -0.12 -1.10 5.98 -26.69 -0.16 -1.26 16 17 C -0.08 -0.78 5.67 -28.05 -0.16 -0.94 16 18 C -0.08 -1.04 5.74 -104.62 -0.60 -1.64 16 19 C -0.13 -1.68 9.61 -39.44 -0.38 -2.06 16 20 C -0.12 -1.62 10.05 -39.68 -0.40 -2.01 16 21 C -0.13 -2.01 10.05 -39.69 -0.40 -2.41 16 22 C -0.10 -1.80 9.00 -39.45 -0.35 -2.15 16 23 C -0.09 -1.39 5.55 -104.62 -0.58 -1.97 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.40 5.83 8.59 -40.82 -0.35 5.48 16 28 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.12 1.14 8.05 -52.48 -0.42 0.71 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.14 3.01 4.39 -52.48 -0.23 2.78 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -32.01 302.86 -9.01 -41.02 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.11 Total: 4.96 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -3.99 Total: -15.49 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.47 Total: -38.61 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.01 -9.01 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.392 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds