Wall clock time and date at job start Sun Mar 29 2020 23:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48496 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47191 * 300.00318 * 3 2 1 6 6 H 1.48504 * 109.47058 * 59.99868 * 3 2 1 7 7 C 1.37882 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46944 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 H 1.09001 * 109.25459 * 324.74640 * 13 12 10 15 15 C 1.52737 * 109.25521 * 205.27760 * 13 12 10 16 16 C 1.53330 * 108.37675 * 188.63876 * 15 13 12 17 17 C 1.52742 * 108.37002 * 69.92036 * 16 15 13 18 18 C 1.50629 * 110.59076 * 308.94477 * 17 16 15 19 19 C 1.38920 * 117.74881 * 197.46758 * 18 17 16 20 20 C 1.37928 * 120.54548 * 180.24190 * 19 18 17 21 21 C 1.38266 * 119.77145 * 359.97438 * 20 19 18 22 22 C 1.37926 * 119.76963 * 359.89729 * 21 20 19 23 23 C 1.37658 * 122.57017 * 17.53560 * 18 17 16 24 24 H 0.97004 * 119.99534 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46601 * 60.00062 * 9 7 2 26 26 H 1.08993 * 109.46922 * 300.00362 * 9 7 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 1.08995 * 109.68554 * 308.36362 * 15 13 12 29 29 H 1.09009 * 109.68081 * 68.92059 * 15 13 12 30 30 H 1.08993 * 109.68954 * 189.64400 * 16 15 13 31 31 H 1.08998 * 109.68187 * 310.21003 * 16 15 13 32 32 H 1.09004 * 109.25051 * 69.23416 * 17 16 15 33 33 H 1.09004 * 109.25159 * 188.65524 * 17 16 15 34 34 H 1.08003 * 119.72618 * 0.21901 * 19 18 17 35 35 H 1.07997 * 120.10906 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.10732 * 179.87834 * 21 20 19 37 37 H 1.08005 * 119.72418 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4226 -3.4231 0.0009 12 7 1.7809 -4.9153 0.0029 13 6 2.7328 -6.0288 -0.0034 14 1 3.6018 -5.7555 -0.6020 15 6 2.0656 -7.2584 -0.6164 16 6 2.9943 -8.4621 -0.4173 17 6 3.0131 -8.8149 1.0687 18 6 3.3055 -7.5931 1.8996 19 6 3.7223 -7.7870 3.2106 20 6 4.0008 -6.7087 4.0243 21 6 3.8649 -5.4239 3.5320 22 6 3.4537 -5.2293 2.2299 23 6 3.1731 -6.3139 1.4086 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 0.8272 -5.0925 0.0037 28 1 1.1125 -7.4442 -0.1213 29 1 1.9008 -7.0940 -1.6814 30 1 2.6235 -9.3110 -0.9916 31 1 4.0016 -8.2071 -0.7468 32 1 2.0423 -9.2200 1.3542 33 1 3.7825 -9.5656 1.2501 34 1 3.8287 -8.7903 3.5958 35 1 4.3239 -6.8676 5.0425 36 1 4.0796 -4.5756 4.1651 37 1 3.3482 -4.2253 1.8460 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:25 Heat of formation + Delta-G solvation = -50.372132 kcal Electronic energy + Delta-G solvation = -19096.725627 eV Core-core repulsion = 16222.916656 eV Total energy + Delta-G solvation = -2873.808971 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55079 -39.86621 -37.25619 -35.21859 -35.05245 -32.41661 -31.14748 -30.84715 -29.10101 -25.86285 -24.29398 -23.68785 -22.81474 -21.32399 -20.35352 -18.57697 -17.89562 -17.57439 -17.03292 -16.46466 -16.27048 -16.04471 -15.81678 -14.87732 -14.69193 -14.50634 -14.19807 -14.12928 -13.84489 -13.55151 -13.13911 -13.04734 -12.77774 -12.61652 -12.58266 -12.26378 -12.07942 -11.89068 -11.51371 -11.44997 -11.33943 -10.64883 -10.53314 -10.03169 -9.64699 -9.48248 -8.27377 -6.34502 0.42243 0.48469 1.37375 1.38016 1.53081 1.86187 2.31678 2.49235 2.90248 3.07954 3.68850 3.75250 3.99592 4.06310 4.15638 4.22503 4.30858 4.37444 4.51370 4.61208 4.68094 4.77037 4.92844 5.03469 5.05018 5.08901 5.14360 5.16513 5.23201 5.31583 5.39340 5.55523 5.60183 5.67868 5.71361 5.82387 6.03529 6.15716 6.69638 6.82801 7.31915 7.50488 8.85124 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.005149 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.199870 B = 5437.129399 C = 6063.339837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.008 3.992 10 C 0.521 3.479 11 O -0.577 6.577 12 N -0.721 5.721 13 C 0.182 3.818 14 H 0.065 0.935 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.077 4.077 18 C -0.075 4.075 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.106 4.106 24 H 0.267 0.733 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.410 0.590 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -21.074 3.415 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.072 0.928 9 C -0.032 4.032 10 C 0.311 3.689 11 O -0.457 6.457 12 N -0.374 5.374 13 C 0.078 3.922 14 H 0.083 0.917 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.113 4.113 18 C -0.075 4.075 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.107 4.107 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.246 0.754 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.135 0.865 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.689 -20.800 3.399 21.396 hybrid contribution -0.071 1.662 0.112 1.667 sum 3.617 -19.138 3.511 19.791 Atomic orbital electron populations 1.70040 1.07128 1.28016 1.51256 1.25787 0.95842 1.02726 0.94487 0.85414 0.78547 0.78901 0.78285 1.20089 1.19584 1.19750 1.21377 0.93607 0.91219 1.51051 0.92764 1.19077 0.94314 0.91098 0.98660 1.21394 0.89889 0.84683 0.72957 1.90513 1.19003 1.85393 1.50796 1.46162 1.10581 1.04648 1.75972 1.19791 0.92626 0.87330 0.92475 0.91718 1.21822 0.99769 0.92486 1.01449 1.21534 0.99507 0.97637 0.96325 1.20584 1.03725 0.93593 0.93436 1.20016 0.98337 0.93795 0.95388 1.21503 0.99907 1.00043 0.93169 1.21379 0.99488 0.91829 1.00915 1.21263 1.01359 0.98584 0.95375 1.21703 0.99036 0.99641 0.95248 1.20104 1.01384 0.93137 0.96081 0.92384 0.93961 0.94416 0.75377 0.89720 0.89988 0.87951 0.92230 0.88770 0.88581 0.82784 0.83553 0.86465 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.97 13.29 21.45 0.28 -54.68 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.53 -32.22 8.92 25.60 0.23 -32.00 16 8 H 0.05 3.45 6.75 -2.91 -0.02 3.43 16 9 C 0.01 0.42 5.46 29.10 0.16 0.58 16 10 C 0.52 24.63 6.35 87.66 0.56 25.18 16 11 O -0.58 -31.23 13.21 -3.04 -0.04 -31.27 16 12 N -0.72 -25.67 4.85 -446.63 -2.16 -27.83 16 13 C 0.18 5.63 2.59 44.14 0.11 5.74 16 14 H 0.06 2.35 7.58 -2.39 -0.02 2.34 16 15 C -0.12 -2.37 5.43 30.62 0.17 -2.20 16 16 C -0.11 -1.73 5.98 30.62 0.18 -1.55 16 17 C -0.08 -1.17 5.67 29.74 0.17 -1.00 16 18 C -0.07 -1.79 5.74 -19.86 -0.11 -1.90 16 19 C -0.13 -2.77 9.61 22.36 0.21 -2.56 16 20 C -0.12 -2.90 10.05 22.20 0.22 -2.68 16 21 C -0.15 -4.76 10.05 22.20 0.22 -4.53 16 22 C -0.14 -5.24 9.00 22.36 0.20 -5.04 16 23 C -0.11 -3.36 5.55 -19.86 -0.11 -3.47 16 24 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.41 12.24 8.59 -92.71 -0.80 11.44 16 28 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.04 8.10 -2.39 -0.02 1.03 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.15 2.15 8.05 -2.91 -0.02 2.13 16 35 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.10 4.60 4.39 -2.91 -0.01 4.59 16 Total: -1.00 -73.38 302.86 3.06 -70.32 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.28 Total: 19.57 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 2.68 Total: -24.36 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.88 Total: -82.51 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.04 Total: -31.27 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -73.38 3.06 -70.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.951 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds