Wall clock time and date at job start Sun Mar 29 2020 23:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99901 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00338 * 179.97438 * 10 9 7 13 13 C 1.44583 * 118.64240 * 0.02562 * 12 10 9 14 14 C 1.54865 * 109.59823 * 270.70160 * 13 12 10 15 15 C 1.47090 * 110.32446 * 288.73547 * 14 13 12 16 16 C 1.52567 * 114.32914 * 62.79862 * 15 14 13 17 17 F 1.39903 * 109.48733 * 34.95289 * 16 15 14 18 18 C 1.52998 * 109.48897 * 154.99893 * 16 15 14 19 19 O 1.42900 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.50883 * 109.35843 * 274.99162 * 16 15 14 21 21 C 1.47600 * 118.64568 * 179.72683 * 12 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.08998 * 109.45013 * 30.74465 * 13 12 10 26 26 H 1.08999 * 109.45021 * 150.69121 * 13 12 10 27 27 H 1.09003 * 109.32484 * 48.99872 * 14 13 12 28 28 H 1.09000 * 109.32577 * 168.47138 * 14 13 12 29 29 H 1.09002 * 108.51106 * 184.05939 * 15 14 13 30 30 H 1.09008 * 108.50924 * 301.54506 * 15 14 13 31 31 H 1.08995 * 109.47274 * 300.00287 * 18 16 15 32 32 H 1.09001 * 109.46853 * 60.00384 * 18 16 15 33 33 H 0.96697 * 113.99712 * 180.02562 * 19 18 16 34 34 H 1.09004 * 109.36126 * 212.07640 * 20 16 15 35 35 H 1.09000 * 109.36915 * 331.81851 * 20 16 15 36 36 H 1.09004 * 108.95175 * 258.57518 * 21 12 10 37 37 H 1.08999 * 108.95080 * 17.20971 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 0.0000 13 6 0.3537 -5.1458 0.0000 14 6 -0.1621 -5.2103 1.4588 15 6 0.2877 -6.4526 2.1052 16 6 1.8025 -6.5812 2.2342 17 9 2.3598 -5.3194 2.4676 18 6 2.1382 -7.5115 3.4016 19 8 3.5570 -7.6321 3.5217 20 6 2.3666 -7.1522 0.9566 21 6 2.7665 -6.0142 -0.0062 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 -0.1453 -4.3318 -0.5258 26 1 0.1383 -6.0886 -0.5027 27 1 0.2212 -4.3548 2.0151 28 1 -1.2516 -5.1780 1.4579 29 1 -0.1501 -6.5021 3.1022 30 1 -0.0833 -7.2981 1.5259 31 1 1.7288 -7.0994 4.3239 32 1 1.7045 -8.4947 3.2190 33 1 3.8430 -8.2090 4.2432 34 1 3.2443 -7.7559 1.1871 35 1 1.6137 -7.7775 0.4767 36 1 2.8459 -6.4127 -1.0176 37 1 3.7374 -5.6206 0.2946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:01 Heat of formation + Delta-G solvation = -133.703466 kcal Electronic energy + Delta-G solvation = -20973.791168 eV Core-core repulsion = 17665.599455 eV Total energy + Delta-G solvation = -3308.191713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.34517 -39.23707 -37.43510 -36.19704 -33.32455 -33.04933 -32.36155 -29.05102 -27.73360 -25.75543 -24.07981 -23.09355 -21.25838 -19.89204 -18.14590 -17.59697 -16.65399 -16.25139 -16.01904 -15.35435 -15.28152 -14.94246 -14.51228 -14.31251 -13.75122 -13.66536 -13.15827 -12.79477 -12.50048 -12.44077 -12.17263 -11.91011 -11.67236 -11.20811 -11.09948 -10.96383 -10.73064 -10.67520 -10.51620 -10.38664 -10.29801 -10.18686 -9.85498 -9.12763 -8.43103 -8.34034 -7.91183 -5.97409 -3.95557 3.43538 3.44567 3.50871 3.74432 3.81408 3.90776 4.46730 4.53263 4.56792 4.78580 4.81283 4.99447 5.09748 5.16106 5.30344 5.40487 5.49593 5.56630 5.75465 5.79438 5.88727 6.00179 6.01311 6.08225 6.24295 6.30077 6.50706 6.58840 7.22345 7.35347 7.38692 7.46057 8.04974 8.11576 8.52064 9.14860 9.39159 9.68883 11.15058 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.005851 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.306749 B = 4784.539913 C = 4954.499606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.009 3.991 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.622 5.622 13 C 0.117 3.883 14 C -0.144 4.144 15 C -0.132 4.132 16 C 0.132 3.868 17 F -0.185 7.185 18 C 0.057 3.943 19 O -0.561 6.561 20 C -0.151 4.151 21 C 0.119 3.881 22 H 0.261 0.739 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.379 0.621 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -18.933 5.006 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.091 0.909 9 C -0.030 4.030 10 C 0.309 3.691 11 O -0.420 6.420 12 N -0.357 5.357 13 C -0.008 4.008 14 C -0.182 4.182 15 C -0.170 4.170 16 C 0.114 3.886 17 F -0.165 7.165 18 C -0.021 4.021 19 O -0.366 6.366 20 C -0.190 4.190 21 C -0.004 4.004 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.687 -18.251 4.487 18.870 hybrid contribution 0.208 0.379 0.647 0.778 sum -1.479 -17.872 5.133 18.653 Atomic orbital electron populations 1.69951 1.05976 1.26816 1.51537 1.24987 0.94895 0.99338 0.95356 0.86510 0.79401 0.82410 0.78846 1.21421 1.20171 1.20179 1.21182 0.94259 0.89305 1.49625 0.90861 1.19255 0.94140 0.90547 0.99065 1.21977 0.90895 0.83388 0.72808 1.90502 1.18188 1.84209 1.49061 1.47875 1.05478 1.06257 1.76119 1.21446 0.81552 1.02081 0.95700 1.21234 1.00993 0.98263 0.97741 1.20983 0.93276 1.00526 1.02175 1.20327 0.93316 0.80405 0.94593 1.92965 1.86677 1.41346 1.95506 1.22805 0.82550 0.98727 0.98038 1.86561 1.21078 1.72116 1.56858 1.22440 1.02588 0.99141 0.94821 1.21505 0.94569 0.87065 0.97297 0.92997 0.93400 0.93755 0.89242 0.91675 0.90055 0.90357 0.91501 0.90821 0.92614 0.92214 0.77398 0.89265 0.90758 0.92702 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.84 29.54 -169.99 -5.02 17.82 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -15.27 8.92 -34.44 -0.31 -15.58 16 8 H 0.07 2.32 6.75 -52.49 -0.35 1.97 16 9 C 0.01 0.24 3.95 -29.04 -0.11 0.12 16 10 C 0.52 12.70 7.17 -10.99 -0.08 12.62 16 11 O -0.54 -15.26 14.73 5.56 0.08 -15.18 16 12 N -0.62 -11.75 1.74 -172.30 -0.30 -12.05 16 13 C 0.12 1.78 5.17 -4.08 -0.02 1.76 16 14 C -0.14 -2.00 5.39 -28.58 -0.15 -2.16 16 15 C -0.13 -1.50 4.57 -29.79 -0.14 -1.64 16 16 C 0.13 1.79 0.97 -91.91 -0.09 1.70 16 17 F -0.18 -3.58 13.43 2.25 0.03 -3.55 16 18 C 0.06 0.60 6.02 37.16 0.22 0.82 16 19 O -0.56 -6.43 12.63 -35.23 -0.44 -6.87 16 20 C -0.15 -1.92 5.14 -27.09 -0.14 -2.06 16 21 C 0.12 1.96 5.65 -2.74 -0.02 1.95 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.05 1.29 7.08 -51.92 -0.37 0.92 16 24 H 0.04 1.18 7.30 -51.93 -0.38 0.80 16 25 H 0.09 1.47 6.26 -51.93 -0.32 1.14 16 26 H 0.06 0.78 8.06 -51.93 -0.42 0.37 16 27 H 0.08 1.43 6.70 -51.93 -0.35 1.09 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 30 H 0.07 0.66 7.36 -51.92 -0.38 0.27 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.38 2.31 9.12 45.56 0.42 2.73 16 34 H 0.09 1.10 7.02 -51.93 -0.36 0.73 16 35 H 0.07 0.75 7.32 -51.93 -0.38 0.37 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.78 6.95 -51.93 -0.36 1.41 16 LS Contribution 293.65 15.07 4.43 4.43 Total: -1.00 -36.36 293.65 -5.91 -42.27 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.49 Total: 0.31 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.93 Total: -0.97 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.44 Total: -38.26 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.36 Total: -22.05 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.03 Total: -3.55 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -36.36 -5.91 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.431 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds