Wall clock time and date at job start Sun Mar 29 2020 23:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99901 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00338 * 179.97438 * 10 9 7 13 13 C 1.44583 * 118.64240 * 0.02562 * 12 10 9 14 14 C 1.54865 * 109.59823 * 270.70160 * 13 12 10 15 15 C 1.47090 * 110.32446 * 288.73547 * 14 13 12 16 16 C 1.52567 * 114.32914 * 62.79862 * 15 14 13 17 17 F 1.39903 * 109.48733 * 34.95289 * 16 15 14 18 18 C 1.52998 * 109.48897 * 154.99893 * 16 15 14 19 19 O 1.42900 * 109.46891 * 179.97438 * 18 16 15 20 20 C 1.50883 * 109.35843 * 274.99162 * 16 15 14 21 21 C 1.47600 * 118.64568 * 179.72683 * 12 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.08998 * 109.45013 * 30.74465 * 13 12 10 26 26 H 1.08999 * 109.45021 * 150.69121 * 13 12 10 27 27 H 1.09003 * 109.32484 * 48.99872 * 14 13 12 28 28 H 1.09000 * 109.32577 * 168.47138 * 14 13 12 29 29 H 1.09002 * 108.51106 * 184.05939 * 15 14 13 30 30 H 1.09008 * 108.50924 * 301.54506 * 15 14 13 31 31 H 1.08995 * 109.47274 * 300.00287 * 18 16 15 32 32 H 1.09001 * 109.46853 * 60.00384 * 18 16 15 33 33 H 0.96697 * 113.99712 * 180.02562 * 19 18 16 34 34 H 1.09004 * 109.36126 * 212.07640 * 20 16 15 35 35 H 1.09000 * 109.36915 * 331.81851 * 20 16 15 36 36 H 1.09004 * 108.95175 * 258.57518 * 21 12 10 37 37 H 1.08999 * 108.95080 * 17.20971 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 0.0000 13 6 0.3537 -5.1458 0.0000 14 6 -0.1621 -5.2103 1.4588 15 6 0.2877 -6.4526 2.1052 16 6 1.8025 -6.5812 2.2342 17 9 2.3598 -5.3194 2.4676 18 6 2.1382 -7.5115 3.4016 19 8 3.5570 -7.6321 3.5217 20 6 2.3666 -7.1522 0.9566 21 6 2.7665 -6.0142 -0.0062 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 -0.1453 -4.3318 -0.5258 26 1 0.1383 -6.0886 -0.5027 27 1 0.2212 -4.3548 2.0151 28 1 -1.2516 -5.1780 1.4579 29 1 -0.1501 -6.5021 3.1022 30 1 -0.0833 -7.2981 1.5259 31 1 1.7288 -7.0994 4.3239 32 1 1.7045 -8.4947 3.2190 33 1 3.8430 -8.2090 4.2432 34 1 3.2443 -7.7559 1.1871 35 1 1.6137 -7.7775 0.4767 36 1 2.8459 -6.4127 -1.0176 37 1 3.7374 -5.6206 0.2946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:00 Heat of formation + Delta-G solvation = -161.063711 kcal Electronic energy + Delta-G solvation = -20974.977597 eV Core-core repulsion = 17665.599455 eV Total energy + Delta-G solvation = -3309.378142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.57816 -40.87317 -38.55888 -37.41962 -35.17745 -34.64499 -33.67536 -30.99399 -29.04684 -26.91512 -25.93467 -24.40953 -22.69320 -20.92153 -19.73743 -18.67652 -18.40421 -17.66777 -17.54900 -16.86146 -16.58744 -16.39356 -16.04253 -15.77984 -15.09116 -14.83550 -14.64041 -14.18859 -14.13331 -13.76193 -13.64646 -13.18731 -13.10978 -13.00045 -12.75579 -12.60463 -12.34144 -12.16923 -11.98817 -11.70378 -11.48778 -11.40116 -11.23067 -11.00028 -10.62366 -10.38662 -9.44855 -8.25581 -6.32528 1.36945 1.40755 1.49337 1.93055 2.24944 2.44813 3.05879 3.08647 3.55853 3.61808 3.81077 3.89189 4.03858 4.08555 4.20747 4.36905 4.38042 4.52201 4.60854 4.66933 4.77759 4.88069 4.95470 4.98621 5.04252 5.08147 5.21612 5.23575 5.29508 5.46437 5.69247 5.88624 6.06185 6.62346 6.80512 6.87284 7.33694 7.54290 8.86400 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.005851 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.306749 B = 4784.539913 C = 4954.499606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.048 0.952 9 C 0.020 3.980 10 C 0.514 3.486 11 O -0.593 6.593 12 N -0.606 5.606 13 C 0.105 3.895 14 C -0.138 4.138 15 C -0.130 4.130 16 C 0.106 3.894 17 F -0.229 7.229 18 C 0.061 3.939 19 O -0.590 6.590 20 C -0.139 4.139 21 C 0.113 3.887 22 H 0.268 0.732 23 H 0.037 0.963 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.031 0.969 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.400 0.600 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -21.218 5.107 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.066 0.934 9 C -0.020 4.020 10 C 0.305 3.695 11 O -0.474 6.474 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.176 4.176 15 C -0.168 4.168 16 C 0.088 3.912 17 F -0.210 7.210 18 C -0.017 4.017 19 O -0.399 6.399 20 C -0.177 4.177 21 C -0.009 4.009 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.251 0.749 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.200 -20.600 4.604 21.350 hybrid contribution 0.623 1.023 0.621 1.349 sum -2.577 -19.577 5.225 20.426 Atomic orbital electron populations 1.70016 1.06962 1.28118 1.50996 1.25763 0.95923 1.02548 0.94374 0.85542 0.78470 0.78450 0.78798 1.19293 1.20144 1.19717 1.21370 0.93482 0.91700 1.51446 0.93381 1.19014 0.94042 0.90751 0.98156 1.21579 0.89636 0.85167 0.73145 1.90464 1.19668 1.85369 1.51851 1.47766 1.07633 1.04885 1.73626 1.21808 0.78864 1.03794 0.97282 1.21180 1.02436 0.97996 0.96036 1.20993 0.91754 1.00297 1.03709 1.20992 0.94675 0.79082 0.96432 1.92887 1.87550 1.44654 1.95866 1.22822 0.82279 0.99875 0.96732 1.86505 1.21992 1.73180 1.58240 1.22425 1.04147 0.97528 0.93633 1.21701 0.92114 0.87212 0.99847 0.92313 0.94465 0.94220 0.91093 0.86760 0.94984 0.87655 0.89784 0.86536 0.92461 0.88028 0.74947 0.88729 0.86455 0.90336 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.62 13.29 21.45 0.28 -55.34 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.96 47.52 29.54 68.60 2.03 49.55 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.54 -34.31 8.92 25.60 0.23 -34.08 16 8 H 0.05 3.23 6.75 -2.91 -0.02 3.21 16 9 C 0.02 1.10 3.95 29.10 0.12 1.21 16 10 C 0.51 26.54 7.17 87.66 0.63 27.17 16 11 O -0.59 -35.52 14.73 -3.03 -0.04 -35.56 16 12 N -0.61 -23.06 1.74 -817.42 -1.42 -24.49 16 13 C 0.11 3.04 5.17 87.37 0.45 3.49 16 14 C -0.14 -3.62 5.39 29.39 0.16 -3.46 16 15 C -0.13 -2.48 4.57 28.61 0.13 -2.35 16 16 C 0.11 2.63 0.97 -11.63 -0.01 2.62 16 17 F -0.23 -9.12 13.43 44.97 0.60 -8.52 16 18 C 0.06 1.08 6.02 71.98 0.43 1.51 16 19 O -0.59 -12.46 12.63 -148.98 -1.88 -14.34 16 20 C -0.14 -3.10 5.14 30.36 0.16 -2.95 16 21 C 0.11 3.68 5.65 86.62 0.49 4.17 16 22 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.04 2.13 7.08 -2.38 -0.02 2.11 16 24 H 0.04 2.21 7.30 -2.39 -0.02 2.20 16 25 H 0.07 2.32 6.26 -2.39 -0.01 2.30 16 26 H 0.11 2.22 8.06 -2.39 -0.02 2.20 16 27 H 0.03 1.16 6.70 -2.39 -0.02 1.14 16 28 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 1.35 7.80 -2.39 -0.02 1.33 16 30 H 0.12 1.28 7.36 -2.38 -0.02 1.26 16 31 H 0.06 0.98 8.09 -2.39 -0.02 0.97 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.40 4.07 9.12 -74.06 -0.68 3.39 16 34 H 0.09 2.05 7.02 -2.39 -0.02 2.03 16 35 H 0.12 1.62 7.32 -2.39 -0.02 1.60 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.94 6.95 -2.39 -0.02 1.93 16 Total: -1.00 -85.02 293.65 3.22 -81.80 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.41 Total: 8.33 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 3.24 Total: -1.43 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.14 Total: -79.83 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -1.93 Total: -49.91 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 0.60 Total: -8.52 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -85.02 3.22 -81.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.262 kcal (2) G-P(sol) polarization free energy of solvation -85.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds