Wall clock time and date at job start Sun Mar 29 2020 23:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48496 * 109.47325 * 240.00147 * 3 2 1 5 5 H 1.48505 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47222 * 119.99830 * 3 2 1 7 7 C 1.37882 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46944 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.09000 * 110.26647 * 52.92328 * 14 13 12 16 16 C 1.54347 * 110.30245 * 174.99946 * 14 13 12 17 17 C 1.54345 * 102.38834 * 92.57892 * 16 14 13 18 18 C 1.51364 * 105.17561 * 26.34388 * 17 16 14 19 19 C 1.38498 * 130.39525 * 162.80704 * 18 17 16 20 20 C 1.38106 * 120.21156 * 180.02562 * 19 18 17 21 21 C 1.38245 * 119.94072 * 0.02562 * 20 19 18 22 22 C 1.38105 * 119.93370 * 359.97438 * 21 20 19 23 23 C 1.38221 * 109.75571 * 342.81514 * 18 17 16 24 24 H 0.97004 * 119.99534 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46601 * 60.00062 * 9 7 2 26 26 H 1.08993 * 109.46922 * 300.00362 * 9 7 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 29 29 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 30 30 H 1.09003 * 110.81854 * 210.79892 * 16 14 13 31 31 H 1.08998 * 110.82421 * 334.34851 * 16 14 13 32 32 H 1.08998 * 110.30127 * 145.27264 * 17 16 14 33 33 H 1.09003 * 110.29931 * 267.41523 * 17 16 14 34 34 H 1.07996 * 119.89305 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.02476 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.03675 * 180.02562 * 21 20 19 37 37 H 1.07997 * 119.89263 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4226 -3.4231 0.0009 12 7 1.7809 -4.9153 0.0029 13 6 2.7328 -6.0288 -0.0034 14 6 1.9678 -7.3538 -0.0073 15 1 1.2436 -7.3693 -0.8217 16 6 2.9486 -8.5382 -0.1401 17 6 3.2235 -8.9073 1.3332 18 6 1.9937 -8.4551 2.0910 19 6 1.5417 -8.7976 3.3546 20 6 0.3729 -8.2506 3.8465 21 6 -0.3492 -7.3585 3.0758 22 6 0.0999 -7.0157 1.8156 23 6 1.2722 -7.5625 1.3208 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 0.8272 -5.0925 0.0037 28 1 3.3578 -5.9676 -0.8944 29 1 3.3612 -5.9747 0.8856 30 1 2.4821 -9.3703 -0.6674 31 1 3.8662 -8.2272 -0.6394 32 1 3.3556 -9.9844 1.4348 33 1 4.1064 -8.3812 1.6964 34 1 2.1046 -9.4954 3.9568 35 1 0.0230 -8.5201 4.8320 36 1 -1.2632 -6.9295 3.4591 37 1 -0.4646 -6.3185 1.2143 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:53 Heat of formation + Delta-G solvation = -30.098377 kcal Electronic energy + Delta-G solvation = -18620.627124 eV Core-core repulsion = 15747.697290 eV Total energy + Delta-G solvation = -2872.929835 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43092 -38.45832 -36.22548 -33.78681 -32.88499 -31.31778 -29.53500 -28.95967 -27.86495 -24.72216 -22.99237 -22.68250 -21.03989 -20.36491 -19.34014 -16.46680 -16.43545 -16.11625 -15.54596 -15.30026 -15.05077 -14.54047 -14.44181 -14.07975 -13.42504 -13.25466 -12.80792 -12.65122 -12.40617 -12.29068 -12.01658 -11.77364 -11.26451 -11.21657 -11.09721 -10.89334 -10.75854 -10.71796 -10.53191 -9.92705 -9.25224 -8.83415 -8.62711 -8.53699 -8.44280 -8.35119 -6.02700 -4.01872 1.32445 1.36910 3.39598 3.41337 3.47022 3.71942 3.78214 3.91097 4.29852 4.44652 4.53192 4.78643 4.93208 4.97751 5.03644 5.20590 5.29354 5.35506 5.47722 5.49360 5.54677 5.66048 5.75691 5.89552 5.91017 5.97758 6.09892 6.17860 6.40036 6.44199 6.50358 6.62006 6.97232 7.09711 7.22987 7.36821 7.99100 8.10085 8.48797 9.08664 9.28920 9.63008 11.09759 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028286 B = 0.004411 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.636052 B = 6346.902161 C = 6917.300140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.005 3.995 10 C 0.514 3.486 11 O -0.548 6.548 12 N -0.747 5.747 13 C 0.134 3.866 14 C -0.063 4.063 15 H 0.086 0.914 16 C -0.112 4.112 17 C -0.083 4.083 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.099 4.099 23 C -0.088 4.088 24 H 0.262 0.738 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.393 0.607 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -20.561 3.432 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.092 0.908 9 C -0.034 4.034 10 C 0.304 3.696 11 O -0.424 6.424 12 N -0.402 5.402 13 C 0.009 3.991 14 C -0.082 4.082 15 H 0.105 0.895 16 C -0.150 4.150 17 C -0.120 4.120 18 C -0.097 4.097 19 C -0.130 4.130 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.117 4.117 23 C -0.088 4.088 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.227 0.773 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.577 -20.255 3.429 20.551 hybrid contribution -0.213 0.814 0.149 0.854 sum 0.365 -19.441 3.578 19.771 Atomic orbital electron populations 1.69953 1.06030 1.26946 1.51220 1.25004 0.94908 0.99442 0.95252 0.86487 0.79381 0.82307 0.78851 1.20131 1.21370 1.20150 1.21134 0.94223 0.89170 1.50061 0.90780 1.19224 0.94176 0.90640 0.99363 1.21988 0.91072 0.83407 0.73139 1.90528 1.18069 1.84706 1.49089 1.46311 1.09386 1.05953 1.78553 1.21158 0.91999 0.84102 1.01814 1.20953 0.97124 0.95251 0.94857 0.89534 1.22287 0.99399 0.97057 0.96250 1.21066 0.95617 1.01160 0.94108 1.20588 0.96738 0.97871 0.94500 1.20580 0.96766 1.00783 0.94827 1.21017 0.95384 0.97860 0.99704 1.21057 1.00202 0.98161 0.94296 1.20688 0.95613 0.99317 0.96070 1.20491 0.94892 0.96984 0.96393 0.92901 0.93548 0.93548 0.77312 0.91706 0.92111 0.90579 0.89972 0.90795 0.90059 0.86528 0.86099 0.85817 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.01 8.92 -34.44 -0.31 -15.32 16 8 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.14 5.46 -29.04 -0.16 -0.02 16 10 C 0.51 12.03 7.82 -10.99 -0.09 11.94 16 11 O -0.55 -14.69 15.46 5.55 0.09 -14.60 16 12 N -0.75 -13.22 5.41 -60.29 -0.33 -13.54 16 13 C 0.13 2.01 4.99 -4.04 -0.02 1.99 16 14 C -0.06 -0.73 2.92 -90.74 -0.26 -0.99 16 15 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.11 -1.03 6.60 -25.32 -0.17 -1.19 16 17 C -0.08 -0.78 6.76 -26.85 -0.18 -0.96 16 18 C -0.10 -1.13 6.14 -104.21 -0.64 -1.77 16 19 C -0.11 -1.22 10.04 -39.53 -0.40 -1.61 16 20 C -0.12 -1.31 10.05 -39.63 -0.40 -1.71 16 21 C -0.12 -1.37 10.05 -39.63 -0.40 -1.77 16 22 C -0.10 -1.23 9.62 -39.53 -0.38 -1.61 16 23 C -0.09 -1.09 5.26 -104.21 -0.55 -1.64 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.39 6.01 7.19 -40.82 -0.29 5.72 16 28 H 0.06 0.99 8.09 -51.92 -0.42 0.57 16 29 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.69 7.86 -51.93 -0.41 0.29 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.39 7.28 -52.49 -0.38 1.01 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -33.65 311.73 -9.09 -42.74 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.22 Total: 2.44 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -4.04 Total: -13.17 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.41 Total: -39.54 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.65 -9.09 -42.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.639 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds