Wall clock time and date at job start Sun Mar 29 2020 23:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36880 * 126.40231 * 2 1 4 4 C 1.34663 * 106.81873 * 180.02562 * 3 2 1 5 5 N 1.34120 * 108.02403 * 0.02562 * 4 3 2 6 6 C 1.30504 * 109.25474 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.64940 * 179.73737 * 6 5 4 8 8 N 1.46501 * 109.46962 * 90.02830 * 7 6 5 9 9 C 1.37943 * 119.99948 * 180.02562 * 8 7 6 10 10 N 1.32623 * 120.23162 * 359.97438 * 9 8 7 11 11 C 1.32250 * 120.08134 * 180.02562 * 10 9 8 12 12 C 1.38963 * 120.56830 * 0.02562 * 11 10 9 13 13 N 1.31720 * 120.47955 * 359.97438 * 12 11 10 14 14 C 1.33905 * 119.89182 * 359.75575 * 13 12 11 15 15 C 1.40822 * 120.28072 * 180.24905 * 14 13 12 16 16 H 1.07999 * 120.00702 * 180.26427 * 15 14 13 17 17 C 1.40117 * 119.99812 * 0.27136 * 15 14 13 18 18 N 1.30732 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47161 * 90.00143 * 19 17 15 21 21 H 1.48506 * 109.47005 * 209.99672 * 19 17 15 22 22 H 1.48497 * 109.47266 * 330.00110 * 19 17 15 23 23 H 1.09005 * 109.46958 * 270.00158 * 1 2 3 24 24 H 1.09006 * 109.47051 * 29.99785 * 1 2 3 25 25 H 1.08991 * 109.47520 * 149.99740 * 1 2 3 26 26 H 1.08005 * 126.58721 * 359.97438 * 3 2 1 27 27 H 1.08010 * 125.98574 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47073 * 210.02343 * 7 6 5 29 29 H 1.09005 * 109.46869 * 330.02648 * 7 6 5 30 30 H 0.96996 * 120.00049 * 359.97438 * 8 7 6 31 31 H 1.07996 * 119.71140 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.76064 * 180.02562 * 12 11 10 33 33 H 0.97007 * 120.00047 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6503 -0.0006 5 7 3.5095 -0.6904 -0.0015 6 6 2.2662 -1.0870 -0.0009 7 6 1.8017 -2.5207 -0.0073 8 7 1.6533 -2.9920 1.3719 9 6 1.2362 -4.2835 1.6183 10 7 0.9677 -5.1023 0.6102 11 6 0.5675 -6.3398 0.8498 12 6 0.4233 -6.7958 2.1546 13 7 0.6839 -6.0015 3.1725 14 6 1.0955 -4.7466 2.9515 15 6 1.3814 -3.8921 4.0337 16 1 1.7091 -2.8794 3.8504 17 6 1.2410 -4.3557 5.3485 18 7 0.8441 -5.5813 5.5705 19 14 1.6209 -3.2225 6.7840 20 1 0.3903 -2.4891 7.1749 21 1 2.1045 -4.0267 7.9350 22 1 2.6700 -2.2508 6.3834 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.9613 2.1345 -0.0004 27 1 4.4369 1.2610 -0.0011 28 1 0.8422 -2.5894 -0.5198 29 1 2.5356 -3.1381 -0.5253 30 1 1.8492 -2.3961 2.1118 31 1 0.3500 -7.0014 0.0244 32 1 0.0960 -7.8090 2.3353 33 1 0.7465 -5.9022 6.4807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161911256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:24 Heat of formation + Delta-G solvation = 118.186043 kcal Electronic energy + Delta-G solvation = -18604.310397 eV Core-core repulsion = 15666.563065 eV Total energy + Delta-G solvation = -2937.747332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97772 -38.94933 -35.18831 -33.97308 -33.92303 -31.60243 -30.68630 -28.56864 -27.02382 -25.96257 -25.29576 -22.00033 -21.33076 -21.26649 -19.70050 -17.64232 -17.25373 -16.34232 -16.13860 -15.34966 -14.93493 -14.66754 -14.11156 -13.80655 -13.51955 -13.38790 -13.03211 -12.76862 -12.69350 -12.34108 -12.24284 -11.95615 -11.42286 -11.32641 -10.63305 -10.22419 -9.87545 -9.83734 -9.53121 -9.44096 -9.38798 -8.58956 -8.38687 -7.35218 -6.82798 -6.42214 -4.43328 2.05283 2.65238 2.83848 3.04988 3.05764 3.08812 3.20262 3.24009 3.88803 4.39688 4.66465 4.70534 4.73432 4.86816 5.08853 5.35567 5.43601 5.59820 5.83778 5.94894 5.98099 6.14149 6.16415 6.36575 6.44311 6.74056 6.83282 6.99068 7.06947 7.21066 7.65163 7.95330 8.08040 8.22951 8.34884 8.61190 8.85265 9.43175 9.99040 10.23388 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.006868 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.184324 B = 4076.123795 C = 5265.810964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.453 5.453 3 C -0.062 4.062 4 C -0.031 4.031 5 N -0.478 5.478 6 C 0.200 3.800 7 C 0.231 3.769 8 N -0.719 5.719 9 C 0.262 3.738 10 N -0.500 5.500 11 C -0.085 4.085 12 C 0.032 3.968 13 N -0.448 5.448 14 C 0.197 3.803 15 C -0.421 4.421 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.713 5.713 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.261 1.261 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.172 0.828 27 H 0.168 0.832 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.405 0.595 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 10.906 -6.025 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.135 5.135 3 C -0.195 4.195 4 C -0.180 4.180 5 N -0.197 5.197 6 C -0.062 4.062 7 C 0.104 3.896 8 N -0.362 5.362 9 C 0.015 3.985 10 N -0.221 5.221 11 C -0.239 4.239 12 C -0.132 4.132 13 N -0.166 5.166 14 C 0.063 3.937 15 C -0.455 4.455 16 H 0.099 0.901 17 C -0.157 4.157 18 N -0.335 5.335 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.185 1.185 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.190 0.810 27 H 0.186 0.814 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.242 0.758 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.182 10.059 -6.080 11.813 hybrid contribution -0.508 1.303 0.867 1.645 sum -1.690 11.362 -5.213 12.614 Atomic orbital electron populations 1.22087 0.76522 1.04492 1.04142 1.45357 1.07731 1.06627 1.53795 1.22680 0.91484 0.92465 1.12915 1.22314 0.96337 0.91323 1.08025 1.70302 1.18607 1.11814 1.18947 1.23543 0.85699 0.91164 1.05840 1.19125 1.00102 0.83597 0.86775 1.43582 1.76876 1.10837 1.04904 1.19227 1.01778 0.86428 0.91049 1.67285 1.16087 1.04656 1.34087 1.22253 1.12357 0.93088 0.96215 1.23162 1.00036 0.99580 0.90383 1.69505 1.14765 1.02494 1.29832 1.19008 0.94048 0.91205 0.89477 1.19232 1.38309 0.98189 0.89806 0.90092 1.25998 0.94023 0.95366 1.00282 1.70095 1.26953 1.14559 1.21870 0.86343 0.79656 0.80695 0.80320 1.19433 1.19968 1.18464 0.90098 0.89821 0.89129 0.81030 0.81439 0.91824 0.90051 0.75807 0.85906 0.85800 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.98 59.85 0.66 1.34 16 2 N -0.45 -6.01 3.15 -121.28 -0.38 -6.40 16 3 C -0.06 -0.74 11.58 -16.56 -0.19 -0.94 16 4 C -0.03 -0.44 11.87 -17.82 -0.21 -0.65 16 5 N -0.48 -8.42 11.25 -10.81 -0.12 -8.54 16 6 C 0.20 3.30 7.27 -155.41 -1.13 2.17 16 7 C 0.23 4.12 6.00 -5.19 -0.03 4.09 16 8 N -0.72 -14.97 5.60 -61.06 -0.34 -15.31 16 9 C 0.26 6.40 7.51 -154.81 -1.16 5.24 16 10 N -0.50 -12.05 9.71 -11.67 -0.11 -12.16 16 11 C -0.09 -1.98 11.22 -17.10 -0.19 -2.17 16 12 C 0.03 0.77 11.21 -17.33 -0.19 0.58 16 13 N -0.45 -12.36 8.03 -10.79 -0.09 -12.44 16 14 C 0.20 5.29 6.56 -84.61 -0.56 4.73 16 15 C -0.42 -10.86 8.89 -37.90 -0.34 -11.20 16 16 H 0.08 1.93 6.12 -52.49 -0.32 1.61 16 17 C 0.07 1.72 5.50 -17.31 -0.10 1.62 16 18 N -0.71 -18.71 11.48 55.56 0.64 -18.07 16 19 Si 0.91 18.24 29.56 -169.99 -5.02 13.22 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.89 7.04 -51.93 -0.37 0.52 16 26 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.06 1.07 7.06 -51.93 -0.37 0.70 16 29 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.40 8.39 6.45 -40.82 -0.26 8.13 16 31 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 32 H 0.12 2.66 8.06 -52.48 -0.42 2.23 16 33 H 0.27 6.52 8.29 -40.82 -0.34 6.19 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -31.87 290.30 -7.91 -39.78 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.41 Total: 10.73 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.44 Total: 4.82 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -0.41 Total: -72.92 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.87 -7.91 -39.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161911256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.964 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds