Wall clock time and date at job start Sun Mar 29 2020 23:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36880 * 126.40231 * 2 1 4 4 C 1.34663 * 106.81873 * 180.02562 * 3 2 1 5 5 N 1.34120 * 108.02403 * 0.02562 * 4 3 2 6 6 C 1.30504 * 109.25474 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.64940 * 179.73737 * 6 5 4 8 8 N 1.46501 * 109.46962 * 90.02830 * 7 6 5 9 9 C 1.37943 * 119.99948 * 180.02562 * 8 7 6 10 10 N 1.32623 * 120.23162 * 359.97438 * 9 8 7 11 11 C 1.32250 * 120.08134 * 180.02562 * 10 9 8 12 12 C 1.38963 * 120.56830 * 0.02562 * 11 10 9 13 13 N 1.31720 * 120.47955 * 359.97438 * 12 11 10 14 14 C 1.33905 * 119.89182 * 359.75575 * 13 12 11 15 15 C 1.40822 * 120.28072 * 180.24905 * 14 13 12 16 16 H 1.07999 * 120.00702 * 180.26427 * 15 14 13 17 17 C 1.40117 * 119.99812 * 0.27136 * 15 14 13 18 18 N 1.30732 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47161 * 90.00143 * 19 17 15 21 21 H 1.48506 * 109.47005 * 209.99672 * 19 17 15 22 22 H 1.48497 * 109.47266 * 330.00110 * 19 17 15 23 23 H 1.09005 * 109.46958 * 270.00158 * 1 2 3 24 24 H 1.09006 * 109.47051 * 29.99785 * 1 2 3 25 25 H 1.08991 * 109.47520 * 149.99740 * 1 2 3 26 26 H 1.08005 * 126.58721 * 359.97438 * 3 2 1 27 27 H 1.08010 * 125.98574 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47073 * 210.02343 * 7 6 5 29 29 H 1.09005 * 109.46869 * 330.02648 * 7 6 5 30 30 H 0.96996 * 120.00049 * 359.97438 * 8 7 6 31 31 H 1.07996 * 119.71140 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.76064 * 180.02562 * 12 11 10 33 33 H 0.97007 * 120.00047 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6503 -0.0006 5 7 3.5095 -0.6904 -0.0015 6 6 2.2662 -1.0870 -0.0009 7 6 1.8017 -2.5207 -0.0073 8 7 1.6533 -2.9920 1.3719 9 6 1.2362 -4.2835 1.6183 10 7 0.9677 -5.1023 0.6102 11 6 0.5675 -6.3398 0.8498 12 6 0.4233 -6.7958 2.1546 13 7 0.6839 -6.0015 3.1725 14 6 1.0955 -4.7466 2.9515 15 6 1.3814 -3.8921 4.0337 16 1 1.7091 -2.8794 3.8504 17 6 1.2410 -4.3557 5.3485 18 7 0.8441 -5.5813 5.5705 19 14 1.6209 -3.2225 6.7840 20 1 0.3903 -2.4891 7.1749 21 1 2.1045 -4.0267 7.9350 22 1 2.6700 -2.2508 6.3834 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.9613 2.1345 -0.0004 27 1 4.4369 1.2610 -0.0011 28 1 0.8422 -2.5894 -0.5198 29 1 2.5356 -3.1381 -0.5253 30 1 1.8492 -2.3961 2.1118 31 1 0.3500 -7.0014 0.0244 32 1 0.0960 -7.8090 2.3353 33 1 0.7465 -5.9022 6.4807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161911256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:24 Heat of formation + Delta-G solvation = 97.246252 kcal Electronic energy + Delta-G solvation = -18605.218415 eV Core-core repulsion = 15666.563065 eV Total energy + Delta-G solvation = -2938.655349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.05511 -40.82391 -36.85056 -35.84707 -34.93536 -33.46972 -32.24162 -30.06951 -28.03102 -27.77592 -26.72271 -23.86306 -23.13494 -22.30566 -20.91783 -19.51294 -18.67621 -17.81844 -17.65259 -16.79271 -16.48925 -15.87441 -15.83594 -15.33392 -15.05621 -14.62219 -14.49904 -13.97711 -13.88536 -13.73047 -13.67655 -13.30858 -13.15904 -12.95973 -12.37718 -11.96967 -11.70405 -11.31893 -11.24410 -10.97094 -10.59501 -10.44987 -9.48688 -9.20588 -8.65415 -8.28096 -6.35245 0.79863 0.97028 1.24022 1.40444 1.52008 1.54990 1.87343 2.05542 2.20767 2.84083 2.86669 3.38903 3.86189 3.93767 3.96184 4.21036 4.30611 4.32833 4.41421 4.49207 4.58433 4.63936 4.74032 4.84159 4.94406 5.11528 5.21201 5.33686 5.80779 5.83321 6.08982 6.15049 6.26465 6.59724 6.73822 6.97105 7.13334 7.56232 8.08423 8.41700 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.006868 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.184324 B = 4076.123795 C = 5265.810964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.448 5.448 3 C -0.035 4.035 4 C -0.059 4.059 5 N -0.517 5.517 6 C 0.170 3.830 7 C 0.241 3.759 8 N -0.710 5.710 9 C 0.258 3.742 10 N -0.509 5.509 11 C -0.080 4.080 12 C 0.010 3.990 13 N -0.483 5.483 14 C 0.162 3.838 15 C -0.446 4.446 16 H 0.091 0.909 17 C 0.024 3.976 18 N -0.753 5.753 19 Si 0.984 3.016 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.257 1.257 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.219 0.781 27 H 0.190 0.810 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.403 0.597 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 13.281 -6.182 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.130 5.130 3 C -0.170 4.170 4 C -0.207 4.207 5 N -0.237 5.237 6 C -0.092 4.092 7 C 0.115 3.885 8 N -0.352 5.352 9 C 0.012 3.988 10 N -0.231 5.231 11 C -0.234 4.234 12 C -0.152 4.152 13 N -0.202 5.202 14 C 0.028 3.972 15 C -0.480 4.480 16 H 0.109 0.891 17 C -0.198 4.198 18 N -0.376 5.376 19 Si 0.804 3.196 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.180 1.180 23 H 0.100 0.900 24 H 0.140 0.860 25 H 0.104 0.896 26 H 0.235 0.765 27 H 0.207 0.793 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.240 0.760 31 H 0.175 0.825 32 H 0.165 0.835 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.630 12.435 -6.275 14.024 hybrid contribution -0.381 0.599 0.788 1.060 sum -2.011 13.034 -5.488 14.284 Atomic orbital electron populations 1.22357 0.74463 1.06225 1.04717 1.45550 1.09002 1.06058 1.52402 1.23398 0.90508 0.93785 1.09280 1.22834 0.98431 0.90306 1.09167 1.70197 1.19676 1.14130 1.19673 1.23022 0.86230 0.91100 1.08838 1.18969 1.00000 0.84756 0.84753 1.43634 1.75747 1.09554 1.06300 1.19365 1.01210 0.87651 0.90614 1.67415 1.16793 1.05099 1.33810 1.22796 1.10457 0.93174 0.96929 1.23576 1.00595 1.00460 0.90564 1.69430 1.15871 1.03329 1.31533 1.19435 0.95183 0.91663 0.90939 1.19580 1.39126 0.98710 0.90570 0.89109 1.26925 0.93265 0.96822 1.02758 1.70195 1.28019 1.16495 1.22890 0.85172 0.79648 0.78384 0.76365 1.18441 1.19418 1.18017 0.90037 0.86043 0.89573 0.76466 0.79318 0.90819 0.91994 0.75958 0.82510 0.83545 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 10.98 127.77 1.40 2.47 16 2 N -0.45 -10.88 3.15 -537.60 -1.69 -12.57 16 3 C -0.04 -0.73 11.58 83.09 0.96 0.23 16 4 C -0.06 -1.55 11.87 83.52 0.99 -0.56 16 5 N -0.52 -17.99 11.25 -188.13 -2.12 -20.10 16 6 C 0.17 5.50 7.27 138.13 1.00 6.51 16 7 C 0.24 8.69 6.00 85.63 0.51 9.20 16 8 N -0.71 -29.97 5.60 -347.11 -1.94 -31.92 16 9 C 0.26 12.85 7.51 134.03 1.01 13.86 16 10 N -0.51 -24.59 9.71 -190.82 -1.85 -26.44 16 11 C -0.08 -3.67 11.22 84.80 0.95 -2.72 16 12 C 0.01 0.49 11.21 84.88 0.95 1.44 16 13 N -0.48 -27.27 8.03 -188.06 -1.51 -28.78 16 14 C 0.16 8.94 6.56 40.35 0.26 9.20 16 15 C -0.45 -23.39 8.89 23.36 0.21 -23.18 16 16 H 0.09 4.38 6.12 -2.91 -0.02 4.36 16 17 C 0.02 1.22 5.50 85.31 0.47 1.69 16 18 N -0.75 -40.29 11.48 21.86 0.25 -40.04 16 19 Si 0.98 37.34 29.56 68.60 2.03 39.37 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 21 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 23 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.09 1.54 7.04 -2.39 -0.02 1.52 16 26 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 27 H 0.19 3.81 8.06 -2.91 -0.02 3.78 16 28 H 0.07 2.47 7.06 -2.39 -0.02 2.45 16 29 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.40 16.96 6.45 -92.71 -0.60 16.37 16 31 H 0.16 5.99 8.06 -2.91 -0.02 5.97 16 32 H 0.15 6.27 8.06 -2.91 -0.02 6.25 16 33 H 0.28 13.56 8.29 -92.70 -0.77 12.79 16 Total: -1.00 -70.69 290.30 2.44 -68.25 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.55 Total: 34.09 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 8.72 Total: 18.15 kcal Atomic # 7 Polarization: -150.99 SS G_CDS: -8.87 Total: -159.86 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -70.69 2.44 -68.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161911256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.495 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds