Wall clock time and date at job start Mon Mar 30 2020 00:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36361 * 120.08331 * 2 1 4 4 C 1.39542 * 120.16398 * 179.97438 * 3 2 1 5 5 N 1.38848 * 119.84250 * 180.26939 * 4 3 2 6 6 C 1.46502 * 120.00030 * 179.72679 * 5 4 3 7 7 C 1.53009 * 109.47012 * 180.02562 * 6 5 4 8 8 C 1.53838 * 113.65742 * 273.99991 * 7 6 5 9 9 C 1.51780 * 86.68635 * 220.76430 * 8 7 6 10 10 O 1.20756 * 135.74306 * 205.16450 * 9 8 7 11 11 C 1.51575 * 88.46599 * 25.07737 * 9 8 7 12 12 C 1.39590 * 120.31399 * 0.02562 * 4 3 2 13 13 C 1.36314 * 120.16475 * 359.97077 * 12 4 3 14 14 C 1.40876 * 120.08382 * 179.97438 * 2 1 3 15 15 C 1.41133 * 120.15425 * 0.04456 * 14 2 1 16 16 H 1.08005 * 119.99681 * 333.64023 * 15 14 2 17 17 C 1.39865 * 120.00174 * 153.64280 * 15 14 2 18 18 N 1.30900 * 119.99538 * 343.79909 * 17 15 14 19 19 Si 1.86797 * 119.99960 * 163.79345 * 17 15 14 20 20 H 1.48500 * 109.46999 * 90.00195 * 19 17 15 21 21 H 1.48494 * 109.47004 * 209.99816 * 19 17 15 22 22 H 1.48500 * 109.47303 * 330.00513 * 19 17 15 23 23 H 1.09003 * 109.47103 * 270.04160 * 1 2 3 24 24 H 1.08992 * 109.47319 * 30.05038 * 1 2 3 25 25 H 1.09001 * 109.46647 * 150.04957 * 1 2 3 26 26 H 1.08000 * 119.91575 * 359.97438 * 3 2 1 27 27 H 0.96997 * 120.00114 * 359.73417 * 5 4 3 28 28 H 1.09000 * 109.47127 * 300.00249 * 6 5 4 29 29 H 1.08992 * 109.47496 * 60.00636 * 6 5 4 30 30 H 1.09005 * 112.88068 * 45.33495 * 7 6 5 31 31 H 1.08999 * 113.66775 * 335.19428 * 8 7 6 32 32 H 1.08995 * 113.66561 * 106.26292 * 8 7 6 33 33 H 1.09005 * 113.66563 * 220.45309 * 11 9 8 34 34 H 1.08998 * 113.66799 * 89.39457 * 11 9 8 35 35 H 1.08009 * 119.91827 * 179.97438 * 12 4 3 36 36 H 1.08002 * 120.08530 * 180.02562 * 13 12 4 37 37 H 0.97007 * 119.99309 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1819 0.0005 5 7 4.2751 2.3872 0.0062 6 6 5.7401 2.3933 0.0128 7 6 6.2441 3.8380 0.0188 8 6 6.3610 4.4568 -1.3848 9 6 7.6610 5.0774 -0.9067 10 8 8.3183 6.0455 -1.2050 11 6 7.7753 3.9572 0.1080 12 6 4.2922 -0.0222 0.0005 13 6 3.6222 -1.2093 0.0006 14 6 2.2131 -1.2190 0.0005 15 6 1.5126 -2.4442 0.0001 16 1 0.5167 -2.4968 0.4148 17 6 2.1079 -3.5901 -0.5371 18 7 3.1564 -3.4802 -1.3132 19 14 1.4070 -5.2771 -0.1472 20 1 0.3839 -5.6347 -1.1624 21 1 2.4986 -6.2836 -0.1686 22 1 0.7812 -5.2540 1.1993 23 1 -0.3633 0.0007 1.0277 24 1 -0.3633 0.8895 -0.5146 25 1 -0.3633 -0.8905 -0.5131 26 1 1.6505 2.1152 -0.0004 27 1 3.7867 3.2252 0.0059 28 1 6.1016 1.8791 0.9033 29 1 6.1097 1.8830 -0.8765 30 1 5.7139 4.4689 0.7323 31 1 6.4932 3.7208 -2.1778 32 1 5.5825 5.1864 -1.6074 33 1 8.1325 4.2858 1.0840 34 1 8.3049 3.0808 -0.2654 35 1 5.3722 -0.0132 0.0005 36 1 4.1699 -2.1401 0.0010 37 1 3.5691 -4.2750 -1.6861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168395010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:42 Heat of formation + Delta-G solvation = 1.850941 kcal Electronic energy + Delta-G solvation = -18260.259010 eV Core-core repulsion = 15388.714601 eV Total energy + Delta-G solvation = -2871.544408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22165 -38.17655 -36.97772 -34.74005 -32.97043 -30.93828 -29.26465 -26.94562 -26.34757 -25.65135 -23.86612 -21.74576 -20.79893 -19.25254 -19.05222 -17.10008 -16.34348 -16.14012 -15.59826 -15.23221 -14.96988 -14.57168 -14.14643 -13.78519 -13.23539 -12.86059 -12.76215 -12.62681 -12.46814 -11.84796 -11.72426 -11.49782 -11.27662 -11.10928 -11.04940 -10.99193 -10.84010 -10.64737 -10.39683 -9.62769 -9.56650 -9.26817 -9.19035 -8.47421 -7.33967 -6.63174 -6.37828 -4.03693 1.65495 2.90201 3.05933 3.14274 3.18891 3.34578 3.65963 3.96671 4.05136 4.43646 4.58492 4.75971 4.77800 5.07441 5.22706 5.28658 5.39731 5.57368 5.72738 5.76213 5.98059 6.11561 6.24032 6.27011 6.45028 6.70954 6.73213 6.90608 7.02079 7.22469 7.25683 7.36001 7.60639 7.74312 7.81751 8.14559 8.30516 8.48134 8.68579 8.78409 9.06350 9.15367 10.37850 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.003844 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.091352 B = 7282.558373 C = 7840.031540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.157 4.157 4 C 0.095 3.905 5 N -0.762 5.762 6 C 0.153 3.847 7 C -0.110 4.110 8 C -0.186 4.186 9 C 0.358 3.642 10 O -0.434 6.434 11 C -0.184 4.184 12 C -0.168 4.168 13 C -0.121 4.121 14 C 0.078 3.922 15 C -0.463 4.463 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.809 5.809 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.263 1.263 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.384 0.616 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 8.898 1.751 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.179 4.179 4 C -0.002 4.002 5 N -0.398 5.398 6 C 0.027 3.973 7 C -0.129 4.129 8 C -0.224 4.224 9 C 0.232 3.768 10 O -0.305 6.305 11 C -0.222 4.222 12 C -0.190 4.190 13 C -0.141 4.141 14 C 0.075 3.925 15 C -0.494 4.494 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.436 5.436 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.187 1.187 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.216 0.784 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.731 9.173 1.449 10.913 hybrid contribution -0.463 -0.614 0.096 0.775 sum 5.268 8.559 1.545 10.168 Atomic orbital electron populations 1.20416 0.93704 1.00507 0.99600 1.19310 0.94156 0.92759 1.09793 1.19653 0.91526 0.96419 1.10335 1.17307 0.90608 0.85056 1.07263 1.43806 1.03123 1.05307 1.87528 1.20906 0.82814 0.92843 1.00688 1.22453 0.95232 0.98314 0.96908 1.24201 0.97683 1.01297 0.99178 1.25867 0.85263 0.83584 0.82094 1.90412 1.52587 1.26787 1.60757 1.24046 0.97182 0.99795 1.01161 1.20071 0.97050 0.92025 1.09852 1.20909 0.94641 0.96064 1.02489 1.17353 0.91621 0.91610 0.91899 1.19353 1.01985 0.92665 1.35403 0.90757 1.25793 0.94417 1.00873 0.92986 1.69849 1.19284 1.31081 1.23431 0.86439 0.79261 0.81753 0.79942 1.19808 1.20391 1.18730 0.94033 0.94522 0.91931 0.89632 0.78372 0.92979 0.93002 0.88123 0.86123 0.89002 0.88830 0.86088 0.89487 0.86474 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.40 36.00 0.34 -1.43 16 2 C -0.16 -3.77 5.90 -104.30 -0.62 -4.38 16 3 C -0.16 -3.43 9.46 -39.77 -0.38 -3.80 16 4 C 0.09 1.97 6.67 -83.69 -0.56 1.41 16 5 N -0.76 -12.12 5.70 -58.50 -0.33 -12.45 16 6 C 0.15 1.95 4.72 -4.04 -0.02 1.93 16 7 C -0.11 -1.03 3.77 -89.83 -0.34 -1.36 16 8 C -0.19 -1.69 7.62 -26.91 -0.21 -1.89 16 9 C 0.36 3.68 9.14 -28.16 -0.26 3.42 16 10 O -0.43 -5.99 17.99 6.00 0.11 -5.88 16 11 C -0.18 -1.50 7.62 -27.02 -0.21 -1.70 16 12 C -0.17 -3.80 9.23 -39.77 -0.37 -4.16 16 13 C -0.12 -3.10 8.62 -39.27 -0.34 -3.44 16 14 C 0.08 2.05 5.56 -106.79 -0.59 1.46 16 15 C -0.46 -12.20 8.09 -37.88 -0.31 -12.50 16 16 H 0.07 1.89 6.88 -52.48 -0.36 1.53 16 17 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 18 N -0.81 -21.11 10.97 55.54 0.61 -20.50 16 19 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.06 1.33 6.78 -51.93 -0.35 0.98 16 26 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.38 5.40 8.47 -40.82 -0.35 5.05 16 28 H 0.05 0.69 7.93 -51.93 -0.41 0.28 16 29 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.06 7.92 -51.93 -0.41 0.65 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.12 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.09 1.77 6.68 -52.48 -0.35 1.42 16 36 H 0.12 3.12 6.23 -52.49 -0.33 2.79 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -29.02 310.17 -8.95 -37.97 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.05 Total: 6.95 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.93 Total: -24.67 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.28 Total: -32.95 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: 0.11 Total: -5.88 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.02 -8.95 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168395010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.824 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds