Wall clock time and date at job start Mon Mar 30 2020 00:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36361 * 120.08331 * 2 1 4 4 C 1.39542 * 120.16398 * 179.97438 * 3 2 1 5 5 N 1.38848 * 119.84250 * 180.26939 * 4 3 2 6 6 C 1.46502 * 120.00030 * 179.72679 * 5 4 3 7 7 C 1.53009 * 109.47012 * 180.02562 * 6 5 4 8 8 C 1.53838 * 113.65742 * 273.99991 * 7 6 5 9 9 C 1.51780 * 86.68635 * 220.76430 * 8 7 6 10 10 O 1.20756 * 135.74306 * 205.16450 * 9 8 7 11 11 C 1.51575 * 88.46599 * 25.07737 * 9 8 7 12 12 C 1.39590 * 120.31399 * 0.02562 * 4 3 2 13 13 C 1.36314 * 120.16475 * 359.97077 * 12 4 3 14 14 C 1.40876 * 120.08382 * 179.97438 * 2 1 3 15 15 C 1.41133 * 120.15425 * 0.04456 * 14 2 1 16 16 H 1.08005 * 119.99681 * 333.64023 * 15 14 2 17 17 C 1.39865 * 120.00174 * 153.64280 * 15 14 2 18 18 N 1.30900 * 119.99538 * 343.79909 * 17 15 14 19 19 Si 1.86797 * 119.99960 * 163.79345 * 17 15 14 20 20 H 1.48500 * 109.46999 * 90.00195 * 19 17 15 21 21 H 1.48494 * 109.47004 * 209.99816 * 19 17 15 22 22 H 1.48500 * 109.47303 * 330.00513 * 19 17 15 23 23 H 1.09003 * 109.47103 * 270.04160 * 1 2 3 24 24 H 1.08992 * 109.47319 * 30.05038 * 1 2 3 25 25 H 1.09001 * 109.46647 * 150.04957 * 1 2 3 26 26 H 1.08000 * 119.91575 * 359.97438 * 3 2 1 27 27 H 0.96997 * 120.00114 * 359.73417 * 5 4 3 28 28 H 1.09000 * 109.47127 * 300.00249 * 6 5 4 29 29 H 1.08992 * 109.47496 * 60.00636 * 6 5 4 30 30 H 1.09005 * 112.88068 * 45.33495 * 7 6 5 31 31 H 1.08999 * 113.66775 * 335.19428 * 8 7 6 32 32 H 1.08995 * 113.66561 * 106.26292 * 8 7 6 33 33 H 1.09005 * 113.66563 * 220.45309 * 11 9 8 34 34 H 1.08998 * 113.66799 * 89.39457 * 11 9 8 35 35 H 1.08009 * 119.91827 * 179.97438 * 12 4 3 36 36 H 1.08002 * 120.08530 * 180.02562 * 13 12 4 37 37 H 0.97007 * 119.99309 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1819 0.0005 5 7 4.2751 2.3872 0.0062 6 6 5.7401 2.3933 0.0128 7 6 6.2441 3.8380 0.0188 8 6 6.3610 4.4568 -1.3848 9 6 7.6610 5.0774 -0.9067 10 8 8.3183 6.0455 -1.2050 11 6 7.7753 3.9572 0.1080 12 6 4.2922 -0.0222 0.0005 13 6 3.6222 -1.2093 0.0006 14 6 2.2131 -1.2190 0.0005 15 6 1.5126 -2.4442 0.0001 16 1 0.5167 -2.4968 0.4148 17 6 2.1079 -3.5901 -0.5371 18 7 3.1564 -3.4802 -1.3132 19 14 1.4070 -5.2771 -0.1472 20 1 0.3839 -5.6347 -1.1624 21 1 2.4986 -6.2836 -0.1686 22 1 0.7812 -5.2540 1.1993 23 1 -0.3633 0.0007 1.0277 24 1 -0.3633 0.8895 -0.5146 25 1 -0.3633 -0.8905 -0.5131 26 1 1.6505 2.1152 -0.0004 27 1 3.7867 3.2252 0.0059 28 1 6.1016 1.8791 0.9033 29 1 6.1097 1.8830 -0.8765 30 1 5.7139 4.4689 0.7323 31 1 6.4932 3.7208 -2.1778 32 1 5.5825 5.1864 -1.6074 33 1 8.1325 4.2858 1.0840 34 1 8.3049 3.0808 -0.2654 35 1 5.3722 -0.0132 0.0005 36 1 4.1699 -2.1401 0.0010 37 1 3.5691 -4.2750 -1.6861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168395010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:42 Heat of formation + Delta-G solvation = -14.080271 kcal Electronic energy + Delta-G solvation = -18260.949839 eV Core-core repulsion = 15388.714601 eV Total energy + Delta-G solvation = -2872.235237 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07349 -39.82347 -38.03753 -36.23077 -34.68950 -32.64490 -30.89203 -28.49153 -27.19848 -27.01706 -25.57863 -23.00021 -22.33575 -20.76448 -19.96601 -18.95409 -17.69079 -16.94390 -16.77093 -16.65755 -16.27001 -15.85407 -15.50722 -15.21763 -14.69638 -14.38098 -14.23430 -13.84005 -13.50195 -13.42796 -13.38224 -12.89278 -12.72607 -12.68174 -12.55425 -12.35725 -12.12093 -11.92363 -11.72207 -11.35418 -11.05687 -10.97974 -10.42561 -10.12743 -9.13565 -8.47238 -8.06357 -5.92549 0.85258 1.15462 1.24588 1.42447 1.53910 1.62786 2.30543 2.87323 2.90596 2.92315 3.51354 3.81154 3.88506 3.98190 4.26913 4.35851 4.52039 4.55375 4.63755 4.72747 4.80632 4.84325 4.91193 5.00439 5.02728 5.08755 5.21107 5.27783 5.37163 5.37866 5.57414 5.81457 5.97278 6.03268 6.29122 6.46943 6.50429 6.74653 6.95620 7.17296 7.24401 7.40313 8.55113 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.003844 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.091352 B = 7282.558373 C = 7840.031540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.166 4.166 3 C -0.171 4.171 4 C 0.118 3.882 5 N -0.751 5.751 6 C 0.149 3.851 7 C -0.099 4.099 8 C -0.183 4.183 9 C 0.358 3.642 10 O -0.474 6.474 11 C -0.172 4.172 12 C -0.183 4.183 13 C -0.142 4.142 14 C 0.034 3.966 15 C -0.495 4.495 16 H 0.071 0.929 17 C 0.031 3.969 18 N -0.845 5.845 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.262 1.262 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.115 0.885 27 H 0.397 0.603 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 10.219 2.231 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.168 4.168 3 C -0.193 4.193 4 C 0.018 3.982 5 N -0.386 5.386 6 C 0.024 3.976 7 C -0.118 4.118 8 C -0.220 4.220 9 C 0.235 3.765 10 O -0.349 6.349 11 C -0.209 4.209 12 C -0.205 4.205 13 C -0.163 4.163 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.089 0.911 17 C -0.180 4.180 18 N -0.474 5.474 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.186 1.186 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.232 0.768 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.713 10.533 1.936 12.138 hybrid contribution -0.398 -0.820 -0.044 0.912 sum 5.315 9.713 1.893 11.233 Atomic orbital electron populations 1.20405 0.91851 1.01028 1.00557 1.19768 0.95906 0.92748 1.08416 1.19983 0.92167 0.96949 1.10242 1.17428 0.90759 0.86252 1.03771 1.43876 1.04586 1.04152 1.85980 1.21062 0.80726 0.95239 1.00529 1.22327 0.96022 0.96085 0.97381 1.24235 0.97267 1.01331 0.99195 1.26183 0.85159 0.82984 0.82146 1.90404 1.53855 1.28497 1.62137 1.24043 0.96336 0.99247 1.01322 1.20222 0.98075 0.91856 1.10328 1.20855 0.94818 0.96384 1.04211 1.17693 0.92251 0.92790 0.94111 1.19547 1.02315 0.93906 1.36888 0.91120 1.26550 0.94781 1.04236 0.92478 1.69925 1.20769 1.32073 1.24657 0.85389 0.78608 0.77162 0.79610 1.19193 1.19710 1.18579 0.92754 0.91963 0.93359 0.86701 0.76829 0.93050 0.93202 0.86953 0.85633 0.88321 0.87418 0.84651 0.87699 0.88746 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.29 9.40 71.24 0.67 -2.62 16 2 C -0.17 -7.86 5.90 -19.66 -0.12 -7.98 16 3 C -0.17 -7.12 9.46 22.15 0.21 -6.91 16 4 C 0.12 4.67 6.67 38.67 0.26 4.93 16 5 N -0.75 -21.49 5.70 -338.99 -1.93 -23.42 16 6 C 0.15 3.33 4.72 86.38 0.41 3.74 16 7 C -0.10 -1.50 3.77 -10.28 -0.04 -1.54 16 8 C -0.18 -2.79 7.62 30.48 0.23 -2.56 16 9 C 0.36 6.57 9.14 29.67 0.27 6.84 16 10 O -0.47 -12.57 17.99 -1.44 -0.03 -12.59 16 11 C -0.17 -2.25 7.62 30.41 0.23 -2.02 16 12 C -0.18 -8.18 9.23 22.15 0.20 -7.98 16 13 C -0.14 -7.51 8.62 22.47 0.19 -7.31 16 14 C 0.03 1.85 5.56 -21.27 -0.12 1.73 16 15 C -0.49 -26.97 8.09 23.37 0.19 -26.78 16 16 H 0.07 3.72 6.88 -2.91 -0.02 3.70 16 17 C 0.03 1.59 5.15 85.23 0.44 2.03 16 18 N -0.85 -45.76 10.97 21.82 0.24 -45.52 16 19 Si 0.97 39.79 29.59 68.60 2.03 41.82 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 25 H 0.05 2.06 6.78 -2.39 -0.02 2.04 16 26 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.40 9.58 8.47 -92.71 -0.79 8.80 16 28 H 0.05 1.21 7.93 -2.39 -0.02 1.19 16 29 H 0.05 1.18 7.66 -2.39 -0.02 1.17 16 30 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.13 1.86 7.92 -2.39 -0.02 1.84 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.14 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.11 4.19 6.68 -2.91 -0.02 4.17 16 36 H 0.09 5.30 6.23 -2.91 -0.02 5.28 16 37 H 0.28 13.84 8.30 -92.70 -0.77 13.07 16 Total: -1.00 -64.59 310.17 3.64 -60.94 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.30 Total: 25.19 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 3.03 Total: -46.42 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -1.69 Total: -68.94 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.03 Total: -12.59 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -64.59 3.64 -60.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168395010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.864 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds