Wall clock time and date at job start Sun Mar 29 2020 23:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64869 * 359.69678 * 9 7 2 11 11 C 1.54329 * 107.26641 * 178.84835 * 10 9 7 12 12 C 1.55159 * 103.02107 * 338.13775 * 11 10 9 13 13 H 1.09007 * 111.00087 * 277.23372 * 12 11 10 14 14 O 1.42896 * 111.04258 * 153.39527 * 12 11 10 15 15 C 1.42902 * 114.00269 * 156.32937 * 14 12 11 16 16 H 1.09004 * 112.50361 * 339.67520 * 15 14 12 17 17 C 1.52886 * 113.16515 * 209.77288 * 15 14 12 18 18 C 1.51422 * 84.73201 * 244.77548 * 17 15 14 19 19 C 1.38950 * 145.53256 * 179.97438 * 18 17 15 20 20 C 1.37973 * 120.32712 * 180.02562 * 19 18 17 21 21 C 1.38235 * 120.17731 * 0.02562 * 20 19 18 22 22 C 1.38183 * 119.75047 * 0.02562 * 21 20 19 23 23 C 1.38235 * 120.12023 * 359.97438 * 22 21 20 24 24 C 1.47426 * 125.64585 * 179.97438 * 9 7 2 25 25 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.87922 * 298.39046 * 10 9 7 27 27 H 1.08999 * 109.88651 * 59.55033 * 10 9 7 28 28 H 1.08997 * 110.85017 * 219.66958 * 11 10 9 29 29 H 1.08999 * 110.67409 * 96.51533 * 11 10 9 30 30 H 1.08999 * 113.99027 * 358.72398 * 17 15 14 31 31 H 1.09005 * 113.98250 * 130.83160 * 17 15 14 32 32 H 1.08006 * 119.83378 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.91247 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.13164 * 179.97438 * 21 20 19 35 35 H 1.07995 * 119.93830 * 179.97438 * 22 21 20 36 36 H 1.09002 * 110.36613 * 322.93222 * 24 9 7 37 37 H 1.08998 * 110.36249 * 85.14752 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0063 11 6 -0.4485 -4.0441 -0.0257 12 6 0.8518 -4.6562 -0.6105 13 1 0.8565 -4.5966 -1.6989 14 8 1.0253 -6.0056 -0.1735 15 6 1.8459 -6.7952 -1.0367 16 1 1.9183 -6.3773 -2.0408 17 6 1.4765 -8.2788 -1.0265 18 6 2.8531 -8.4741 -0.4267 19 6 3.7695 -9.3975 0.0615 20 6 4.9976 -8.9789 0.5308 21 6 5.3250 -7.6360 0.5191 22 6 4.4172 -6.7130 0.0359 23 6 3.1865 -7.1313 -0.4346 24 6 1.9334 -3.7312 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5505 -2.0864 0.9109 27 1 -0.5613 -2.0502 -0.8744 28 1 -1.2986 -4.2515 -0.6755 29 1 -0.6331 -4.4203 0.9805 30 1 0.6589 -8.5272 -0.3499 31 1 1.3600 -8.7132 -2.0194 32 1 3.5192 -10.4481 0.0735 33 1 5.7046 -9.7023 0.9091 34 1 6.2863 -7.3091 0.8871 35 1 4.6697 -5.6630 0.0257 36 1 2.8327 -3.7405 -0.6154 37 1 2.1686 -4.0410 1.0187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224061473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:50 Heat of formation + Delta-G solvation = 50.799185 kcal Electronic energy + Delta-G solvation = -18886.057835 eV Core-core repulsion = 16016.635982 eV Total energy + Delta-G solvation = -2869.421853 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57809 -38.06953 -36.19857 -34.24129 -32.02552 -30.71025 -29.15528 -27.44699 -26.76909 -24.55119 -23.94479 -21.64179 -20.39700 -20.28398 -19.95626 -17.12948 -16.91747 -16.44709 -15.43183 -14.90197 -14.68347 -14.30893 -14.01928 -13.75821 -13.27163 -13.05339 -12.92498 -12.45227 -12.23980 -12.12549 -11.88013 -11.39606 -11.25845 -10.91217 -10.88618 -10.72524 -10.48355 -10.14540 -10.04260 -9.78179 -9.71646 -9.19466 -8.83410 -8.62456 -8.59259 -6.82772 -5.70721 -3.04574 1.29450 1.38074 3.40433 3.45713 3.48362 3.64411 3.97028 4.15204 4.43218 4.52798 4.69402 5.00009 5.06680 5.17194 5.41878 5.43156 5.51434 5.57047 5.63091 5.65836 5.73634 5.77975 5.84912 5.85668 6.09123 6.28263 6.36839 6.47469 6.49455 6.54285 6.67701 6.75147 6.77317 6.97884 7.56267 7.60403 7.62280 7.83061 8.25995 9.22228 9.82373 10.48136 11.41114 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.030215 B = 0.004699 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.468578 B = 5957.210110 C = 6744.245832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.137 4.137 12 C 0.069 3.931 13 H 0.069 0.931 14 O -0.355 6.355 15 C 0.134 3.866 16 H 0.087 0.913 17 C -0.073 4.073 18 C -0.124 4.124 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.077 4.077 23 C -0.141 4.141 24 C 0.120 3.880 25 H 0.252 0.748 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.036 0.964 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -17.626 -2.233 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.176 4.176 12 C 0.011 3.989 13 H 0.087 0.913 14 O -0.272 6.272 15 C 0.075 3.925 16 H 0.105 0.895 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.095 4.095 23 C -0.142 4.142 24 C -0.006 4.006 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.054 0.946 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.852 -17.469 -2.055 18.246 hybrid contribution 0.710 1.004 -0.081 1.232 sum 5.562 -16.465 -2.137 17.510 Atomic orbital electron populations 1.69966 1.04888 1.24940 1.57209 1.24805 0.95734 0.97658 1.02250 0.86034 0.78708 0.83717 0.77253 1.20512 1.21729 1.21715 1.19113 0.90478 0.82297 1.43669 0.90382 1.44377 1.01747 0.99752 1.87348 1.21172 0.84418 0.87644 1.01400 1.22990 0.95133 0.98812 1.00644 1.23593 0.97646 0.80113 0.97585 0.91328 1.87980 1.67858 1.22504 1.48881 1.22047 0.85242 0.91708 0.93509 0.89487 1.21981 0.93759 0.93802 1.01383 1.22224 0.96485 0.94945 0.98747 1.20455 0.93172 0.98834 0.99734 1.20940 0.96335 0.96030 1.00361 1.21042 0.99418 0.93107 1.00404 1.20352 0.91908 1.00049 0.97172 1.22392 0.95479 0.96582 0.99719 1.21919 0.94441 0.86515 0.97753 0.93773 0.93586 0.93269 0.91739 0.91496 0.87887 0.88419 0.86659 0.85941 0.85646 0.86049 0.94562 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.94 3.39 -170.08 -0.58 -16.52 16 10 C 0.18 4.44 5.38 -3.06 -0.02 4.42 16 11 C -0.14 -2.71 6.69 -24.89 -0.17 -2.88 16 12 C 0.07 1.29 3.48 -24.59 -0.09 1.21 16 13 H 0.07 1.23 7.55 -51.93 -0.39 0.83 16 14 O -0.35 -6.12 10.10 -35.23 -0.36 -6.47 16 15 C 0.13 1.89 4.28 -31.55 -0.13 1.76 16 16 H 0.09 1.13 7.51 -51.93 -0.39 0.74 16 17 C -0.07 -0.82 8.21 -27.59 -0.23 -1.05 16 18 C -0.12 -1.60 7.32 -107.60 -0.79 -2.39 16 19 C -0.10 -1.19 10.05 -39.41 -0.40 -1.59 16 20 C -0.12 -1.29 10.03 -39.68 -0.40 -1.69 16 21 C -0.12 -1.44 10.06 -39.60 -0.40 -1.84 16 22 C -0.08 -1.08 10.04 -39.60 -0.40 -1.47 16 23 C -0.14 -2.07 7.38 -104.55 -0.77 -2.84 16 24 C 0.12 2.65 6.97 -2.54 -0.02 2.63 16 25 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 27 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -31.60 307.49 -10.13 -41.73 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.33 Total: -1.19 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -4.05 Total: -12.69 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.01 Total: -43.28 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.36 Total: -6.47 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.60 -10.13 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224061473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.529 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds