Wall clock time and date at job start Sun Mar 29 2020 23:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64869 * 359.69678 * 9 7 2 11 11 C 1.54329 * 107.26641 * 178.84835 * 10 9 7 12 12 C 1.55159 * 103.02107 * 338.13775 * 11 10 9 13 13 H 1.09007 * 111.00087 * 277.23372 * 12 11 10 14 14 O 1.42896 * 111.04258 * 153.39527 * 12 11 10 15 15 C 1.42902 * 114.00269 * 156.32937 * 14 12 11 16 16 H 1.09004 * 112.50361 * 339.67520 * 15 14 12 17 17 C 1.52886 * 113.16515 * 209.77288 * 15 14 12 18 18 C 1.51422 * 84.73201 * 244.77548 * 17 15 14 19 19 C 1.38950 * 145.53256 * 179.97438 * 18 17 15 20 20 C 1.37973 * 120.32712 * 180.02562 * 19 18 17 21 21 C 1.38235 * 120.17731 * 0.02562 * 20 19 18 22 22 C 1.38183 * 119.75047 * 0.02562 * 21 20 19 23 23 C 1.38235 * 120.12023 * 359.97438 * 22 21 20 24 24 C 1.47426 * 125.64585 * 179.97438 * 9 7 2 25 25 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.87922 * 298.39046 * 10 9 7 27 27 H 1.08999 * 109.88651 * 59.55033 * 10 9 7 28 28 H 1.08997 * 110.85017 * 219.66958 * 11 10 9 29 29 H 1.08999 * 110.67409 * 96.51533 * 11 10 9 30 30 H 1.08999 * 113.99027 * 358.72398 * 17 15 14 31 31 H 1.09005 * 113.98250 * 130.83160 * 17 15 14 32 32 H 1.08006 * 119.83378 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.91247 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.13164 * 179.97438 * 21 20 19 35 35 H 1.07995 * 119.93830 * 179.97438 * 22 21 20 36 36 H 1.09002 * 110.36613 * 322.93222 * 24 9 7 37 37 H 1.08998 * 110.36249 * 85.14752 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0063 11 6 -0.4485 -4.0441 -0.0257 12 6 0.8518 -4.6562 -0.6105 13 1 0.8565 -4.5966 -1.6989 14 8 1.0253 -6.0056 -0.1735 15 6 1.8459 -6.7952 -1.0367 16 1 1.9183 -6.3773 -2.0408 17 6 1.4765 -8.2788 -1.0265 18 6 2.8531 -8.4741 -0.4267 19 6 3.7695 -9.3975 0.0615 20 6 4.9976 -8.9789 0.5308 21 6 5.3250 -7.6360 0.5191 22 6 4.4172 -6.7130 0.0359 23 6 3.1865 -7.1313 -0.4346 24 6 1.9334 -3.7312 0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5505 -2.0864 0.9109 27 1 -0.5613 -2.0502 -0.8744 28 1 -1.2986 -4.2515 -0.6755 29 1 -0.6331 -4.4203 0.9805 30 1 0.6589 -8.5272 -0.3499 31 1 1.3600 -8.7132 -2.0194 32 1 3.5192 -10.4481 0.0735 33 1 5.7046 -9.7023 0.9091 34 1 6.2863 -7.3091 0.8871 35 1 4.6697 -5.6630 0.0257 36 1 2.8327 -3.7405 -0.6154 37 1 2.1686 -4.0410 1.0187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224061473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:49 Heat of formation + Delta-G solvation = 33.097689 kcal Electronic energy + Delta-G solvation = -18886.825429 eV Core-core repulsion = 16016.635982 eV Total energy + Delta-G solvation = -2870.189448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57355 -39.59267 -37.64324 -35.48615 -33.98636 -31.64566 -31.06572 -28.99712 -27.97457 -26.43207 -25.07338 -22.63373 -22.10733 -21.91134 -21.12950 -19.00570 -18.23067 -17.57995 -16.76773 -16.50275 -16.18461 -15.62928 -15.53068 -15.00793 -14.71306 -14.28594 -14.02475 -13.94127 -13.85142 -13.64843 -13.05155 -12.98693 -12.84046 -12.58436 -12.45288 -12.12321 -12.00302 -11.91936 -11.77092 -11.52744 -11.28523 -10.75393 -10.59544 -9.78511 -9.55230 -8.95708 -7.88271 -5.25491 0.35869 0.43960 1.44979 1.46413 1.56839 2.42086 2.56656 2.91392 3.18900 3.30630 3.50550 3.61750 3.75776 3.87013 4.04277 4.09098 4.15327 4.20691 4.27519 4.55276 4.66008 4.68933 4.73236 4.81937 4.83737 4.92994 4.97401 5.02182 5.09451 5.17357 5.40468 5.47917 5.57542 5.60272 5.70223 5.79757 6.08055 6.12909 6.29864 7.06075 7.71382 8.36107 9.22355 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.030215 B = 0.004699 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.468578 B = 5957.210110 C = 6744.245832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.625 5.625 10 C 0.185 3.815 11 C -0.124 4.124 12 C 0.088 3.912 13 H 0.083 0.917 14 O -0.362 6.362 15 C 0.119 3.881 16 H 0.096 0.904 17 C -0.056 4.056 18 C -0.131 4.131 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.102 4.102 23 C -0.180 4.180 24 C 0.120 3.880 25 H 0.249 0.751 26 H 0.010 0.990 27 H 0.023 0.977 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -19.770 -2.703 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.353 5.353 10 C 0.061 3.939 11 C -0.162 4.162 12 C 0.030 3.970 13 H 0.101 0.899 14 O -0.280 6.280 15 C 0.061 3.939 16 H 0.114 0.886 17 C -0.093 4.093 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.121 4.121 23 C -0.180 4.180 24 C -0.006 4.006 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.041 0.959 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.684 -19.650 -2.527 20.612 hybrid contribution 0.543 1.593 0.102 1.686 sum 6.227 -18.057 -2.425 19.254 Atomic orbital electron populations 1.70178 1.06305 1.25440 1.57945 1.25678 0.96684 1.01031 1.02174 0.84970 0.78072 0.79116 0.76903 1.19115 1.21453 1.21768 1.19490 0.90977 0.83597 1.43605 0.90165 1.44679 1.02611 1.00815 1.87210 1.20939 0.83666 0.90966 0.98376 1.22820 0.96729 0.94877 1.01792 1.23250 0.95274 0.80655 0.97829 0.89947 1.87958 1.68586 1.21375 1.50073 1.22447 0.85102 0.93012 0.93368 0.88598 1.22005 0.93007 0.91198 1.03059 1.22511 0.97389 0.94399 0.98815 1.20853 0.92949 1.00091 0.98732 1.21368 0.96754 0.96092 0.99101 1.21342 0.99824 0.93510 0.99924 1.20505 0.92824 1.00052 0.98685 1.22594 0.95940 0.98070 1.01424 1.22006 0.95691 0.85522 0.97382 0.94170 0.97162 0.95910 0.88758 0.91169 0.87401 0.85364 0.83895 0.82745 0.83721 0.87424 0.94234 0.96806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 10.31 21.65 0.22 -57.70 16 2 C -0.06 -3.63 5.49 84.86 0.47 -3.16 16 3 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.25 -14.42 10.28 84.03 0.86 -13.55 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -33.85 3.39 -692.01 -2.35 -36.20 16 10 C 0.19 9.51 5.38 86.73 0.47 9.97 16 11 C -0.12 -4.83 6.69 31.79 0.21 -4.61 16 12 C 0.09 3.27 3.48 31.98 0.11 3.38 16 13 H 0.08 2.83 7.55 -2.38 -0.02 2.81 16 14 O -0.36 -12.07 10.10 -148.98 -1.51 -13.57 16 15 C 0.12 3.19 4.28 27.47 0.12 3.31 16 16 H 0.10 2.35 7.51 -2.38 -0.02 2.33 16 17 C -0.06 -1.12 8.21 30.04 0.25 -0.87 16 18 C -0.13 -3.11 7.32 -21.79 -0.16 -3.26 16 19 C -0.11 -2.16 10.05 22.38 0.22 -1.94 16 20 C -0.12 -2.19 10.03 22.21 0.22 -1.97 16 21 C -0.13 -2.86 10.06 22.26 0.22 -2.64 16 22 C -0.10 -2.88 10.04 22.26 0.22 -2.66 16 23 C -0.18 -5.14 7.38 -19.82 -0.15 -5.28 16 24 C 0.12 5.36 6.97 86.85 0.60 5.97 16 25 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 26 H 0.01 0.58 7.52 -2.39 -0.02 0.57 16 27 H 0.02 1.27 7.37 -2.39 -0.02 1.25 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.11 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -69.77 307.49 3.12 -66.65 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.05 Total: 9.71 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.68 Total: -17.33 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.13 Total: -93.90 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.51 Total: -13.57 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -69.77 3.12 -66.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224061473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.747 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds