Wall clock time and date at job start Sun Mar 29 2020 23:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99348 * 2 1 4 4 H 1.48502 * 109.47002 * 269.99670 * 3 2 1 5 5 H 1.48500 * 109.47477 * 30.00022 * 3 2 1 6 6 H 1.48500 * 109.46748 * 149.99619 * 3 2 1 7 7 C 1.37871 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99768 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00307 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47662 * 180.02562 * 9 7 2 11 11 C 1.47955 * 111.00468 * 189.99976 * 10 9 7 12 12 C 1.53928 * 86.18224 * 222.41488 * 11 10 9 13 13 O 1.42905 * 113.73193 * 138.08015 * 12 11 10 14 14 C 1.42901 * 113.99768 * 150.00139 * 13 12 11 15 15 H 1.08992 * 113.12902 * 342.36816 * 14 13 12 16 16 C 1.52891 * 113.98758 * 209.99548 * 14 13 12 17 17 C 1.50762 * 89.76426 * 246.05661 * 16 14 13 18 18 C 1.38235 * 149.33809 * 179.97438 * 17 16 14 19 19 C 1.38180 * 120.12242 * 179.97438 * 18 17 16 20 20 C 1.38234 * 119.74798 * 0.28795 * 19 18 17 21 21 C 1.37982 * 120.17698 * 359.39457 * 20 19 18 22 22 C 1.38364 * 90.24772 * 0.02562 * 17 16 14 23 23 C 1.47958 * 111.00320 * 90.63690 * 10 9 7 24 24 H 0.96994 * 120.00382 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47179 * 59.99789 * 9 7 2 26 26 H 1.09012 * 109.47302 * 300.00516 * 9 7 2 27 27 H 1.09003 * 113.76010 * 108.09490 * 11 10 9 28 28 H 1.09006 * 113.85693 * 336.74921 * 11 10 9 29 29 H 1.09002 * 113.73382 * 269.25590 * 12 11 10 30 30 H 1.08999 * 113.16245 * 130.83263 * 16 14 13 31 31 H 1.08998 * 113.21852 * 1.28949 * 16 14 13 32 32 H 1.07989 * 119.93796 * 0.02562 * 18 17 16 33 33 H 1.08002 * 120.12181 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.91409 * 179.72123 * 20 19 18 35 35 H 1.08004 * 119.83735 * 180.28046 * 21 20 19 36 36 H 1.09003 * 113.75499 * 23.26671 * 23 10 9 37 37 H 1.09001 * 113.76348 * 251.90749 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5788 0.0010 11 6 5.4605 -2.6253 0.2414 12 6 5.5050 -3.6933 -0.8662 13 8 6.6042 -3.5423 -1.7669 14 6 7.0707 -4.7720 -2.3259 15 1 6.7389 -5.6484 -1.7693 16 6 8.5625 -4.7763 -2.6606 17 6 8.2269 -4.8839 -4.1265 18 6 8.6494 -4.9706 -5.4398 19 6 7.7234 -5.0554 -6.4620 20 6 6.3730 -5.0472 -6.1666 21 6 5.9503 -4.9673 -4.8556 22 6 6.8767 -4.8794 -3.8239 23 6 4.1932 -3.0734 -1.3802 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8753 -0.6802 -0.8889 27 1 5.7314 -3.0034 1.2272 28 1 5.9796 -1.7023 -0.0173 29 1 5.3952 -4.7130 -0.4971 30 1 9.0858 -5.6512 -2.2752 31 1 9.0634 -3.8432 -2.4028 32 1 9.7050 -4.9729 -5.6673 33 1 8.0536 -5.1236 -7.4881 34 1 5.6470 -5.1088 -6.9638 35 1 4.8939 -4.9658 -4.6308 36 1 4.3399 -2.2807 -2.1140 37 1 3.4514 -3.8094 -1.6902 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224071226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:47 Heat of formation + Delta-G solvation = 65.330799 kcal Electronic energy + Delta-G solvation = -18451.372593 eV Core-core repulsion = 15582.580878 eV Total energy + Delta-G solvation = -2868.791715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72070 -39.32887 -36.79641 -34.41387 -32.68782 -30.83319 -29.60779 -27.28378 -25.66802 -25.24734 -24.19307 -21.80437 -21.25876 -20.38409 -19.50750 -17.29412 -16.83135 -16.72978 -15.75532 -15.13094 -14.86223 -14.61660 -14.47784 -14.02317 -13.45859 -13.35272 -13.05130 -12.82880 -12.35251 -12.27880 -12.16502 -12.04142 -11.63811 -11.39248 -11.09585 -10.85307 -10.60800 -10.49188 -9.95389 -9.72707 -9.38495 -9.34073 -8.96243 -8.74961 -8.57802 -7.99359 -6.04947 -4.02443 1.15272 1.27061 3.28446 3.35801 3.37872 3.45440 3.79688 4.00048 4.31472 4.42000 4.48889 4.64666 4.85724 4.89479 4.92108 5.02617 5.19275 5.26267 5.36642 5.49250 5.52183 5.57385 5.73429 5.79802 5.93093 5.95674 6.04079 6.22298 6.25906 6.30192 6.37685 6.44375 6.61950 6.74635 6.85553 7.32293 7.32816 7.69330 7.80250 8.62582 9.04751 9.56357 11.08402 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.004143 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.424985 B = 6757.484141 C = 7149.222852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.461 5.461 11 C -0.002 4.002 12 C 0.051 3.949 13 O -0.349 6.349 14 C 0.129 3.871 15 H 0.099 0.901 16 C -0.071 4.071 17 C -0.124 4.124 18 C -0.096 4.096 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.084 4.084 22 C -0.146 4.146 23 C 0.001 3.999 24 H 0.264 0.736 25 H 0.028 0.972 26 H -0.004 1.004 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.257 -11.484 -9.080 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.005 3.995 10 N -0.185 5.185 11 C -0.131 4.131 12 C -0.007 4.007 13 O -0.266 6.266 14 C 0.070 3.930 15 H 0.116 0.884 16 C -0.108 4.108 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.102 4.102 22 C -0.146 4.146 23 C -0.128 4.128 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.014 0.986 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.711 -11.487 -8.679 22.825 hybrid contribution 0.594 1.366 -0.677 1.636 sum 18.305 -10.122 -9.356 22.914 Atomic orbital electron populations 1.69892 1.06110 1.26838 1.51100 1.24912 0.94760 0.98841 0.94848 0.86867 0.80346 0.84048 0.78549 1.20259 1.21036 1.19215 1.20961 0.88531 0.94803 1.50224 0.90194 1.20695 0.97955 0.85220 0.95677 1.68496 1.10067 1.23412 1.16529 1.24228 0.92807 0.97971 0.98130 1.24583 0.86016 0.99673 0.90426 1.88050 1.49828 1.27948 1.60756 1.22032 0.93760 0.88541 0.88655 0.88373 1.21808 0.96133 1.03756 0.89081 1.21583 0.96965 0.99151 0.94708 1.20121 0.99582 1.01460 0.90288 1.21031 0.93127 1.00385 0.98713 1.21001 0.96009 1.01091 0.96041 1.20691 0.99641 0.98263 0.91645 1.23041 0.94749 1.00233 0.96623 1.24353 0.95198 0.99945 0.93333 0.92644 0.95362 0.98614 0.89489 0.91210 0.88711 0.88914 0.88462 0.86410 0.85641 0.85719 0.86207 0.90922 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.88 27.47 -169.99 -4.67 17.22 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -14.87 9.92 -34.45 -0.34 -15.21 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.13 3.29 3.62 -4.98 -0.02 3.27 16 10 N -0.46 -9.89 6.14 -240.00 -1.47 -11.36 16 11 C 0.00 -0.04 7.78 -2.77 -0.02 -0.06 16 12 C 0.05 0.78 4.50 -25.80 -0.12 0.66 16 13 O -0.35 -5.20 10.38 -35.23 -0.37 -5.57 16 14 C 0.13 1.54 4.63 -27.58 -0.13 1.41 16 15 H 0.10 0.98 7.46 -51.93 -0.39 0.59 16 16 C -0.07 -0.71 7.82 -31.54 -0.25 -0.96 16 17 C -0.12 -1.44 7.60 -104.55 -0.79 -2.24 16 18 C -0.10 -1.00 10.04 -39.60 -0.40 -1.40 16 19 C -0.11 -1.13 10.06 -39.60 -0.40 -1.53 16 20 C -0.12 -1.32 10.03 -39.68 -0.40 -1.72 16 21 C -0.08 -1.05 10.05 -39.41 -0.40 -1.44 16 22 C -0.15 -1.88 7.14 -107.58 -0.77 -2.65 16 23 C 0.00 0.02 7.79 -2.77 -0.02 0.00 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 26 H 0.00 -0.10 6.80 -51.92 -0.35 -0.45 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.22 7.93 -51.93 -0.41 0.80 16 29 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -32.75 310.56 -10.47 -43.22 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.27 Total: -0.96 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -4.14 Total: -19.96 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.70 Total: -38.63 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.37 Total: -5.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.75 -10.47 -43.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224071226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.552 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds