Wall clock time and date at job start Sun Mar 29 2020 23:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99348 * 2 1 4 4 H 1.48502 * 109.47002 * 269.99670 * 3 2 1 5 5 H 1.48500 * 109.47477 * 30.00022 * 3 2 1 6 6 H 1.48500 * 109.46748 * 149.99619 * 3 2 1 7 7 C 1.37871 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99768 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00307 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47662 * 180.02562 * 9 7 2 11 11 C 1.47955 * 111.00468 * 189.99976 * 10 9 7 12 12 C 1.53928 * 86.18224 * 222.41488 * 11 10 9 13 13 O 1.42905 * 113.73193 * 138.08015 * 12 11 10 14 14 C 1.42901 * 113.99768 * 150.00139 * 13 12 11 15 15 H 1.08992 * 113.12902 * 342.36816 * 14 13 12 16 16 C 1.52891 * 113.98758 * 209.99548 * 14 13 12 17 17 C 1.50762 * 89.76426 * 246.05661 * 16 14 13 18 18 C 1.38235 * 149.33809 * 179.97438 * 17 16 14 19 19 C 1.38180 * 120.12242 * 179.97438 * 18 17 16 20 20 C 1.38234 * 119.74798 * 0.28795 * 19 18 17 21 21 C 1.37982 * 120.17698 * 359.39457 * 20 19 18 22 22 C 1.38364 * 90.24772 * 0.02562 * 17 16 14 23 23 C 1.47958 * 111.00320 * 90.63690 * 10 9 7 24 24 H 0.96994 * 120.00382 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47179 * 59.99789 * 9 7 2 26 26 H 1.09012 * 109.47302 * 300.00516 * 9 7 2 27 27 H 1.09003 * 113.76010 * 108.09490 * 11 10 9 28 28 H 1.09006 * 113.85693 * 336.74921 * 11 10 9 29 29 H 1.09002 * 113.73382 * 269.25590 * 12 11 10 30 30 H 1.08999 * 113.16245 * 130.83263 * 16 14 13 31 31 H 1.08998 * 113.21852 * 1.28949 * 16 14 13 32 32 H 1.07989 * 119.93796 * 0.02562 * 18 17 16 33 33 H 1.08002 * 120.12181 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.91409 * 179.72123 * 20 19 18 35 35 H 1.08004 * 119.83735 * 180.28046 * 21 20 19 36 36 H 1.09003 * 113.75499 * 23.26671 * 23 10 9 37 37 H 1.09001 * 113.76348 * 251.90749 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5788 0.0010 11 6 5.4605 -2.6253 0.2414 12 6 5.5050 -3.6933 -0.8662 13 8 6.6042 -3.5423 -1.7669 14 6 7.0707 -4.7720 -2.3259 15 1 6.7389 -5.6484 -1.7693 16 6 8.5625 -4.7763 -2.6606 17 6 8.2269 -4.8839 -4.1265 18 6 8.6494 -4.9706 -5.4398 19 6 7.7234 -5.0554 -6.4620 20 6 6.3730 -5.0472 -6.1666 21 6 5.9503 -4.9673 -4.8556 22 6 6.8767 -4.8794 -3.8239 23 6 4.1932 -3.0734 -1.3802 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8753 -0.6802 -0.8889 27 1 5.7314 -3.0034 1.2272 28 1 5.9796 -1.7023 -0.0173 29 1 5.3952 -4.7130 -0.4971 30 1 9.0858 -5.6512 -2.2752 31 1 9.0634 -3.8432 -2.4028 32 1 9.7050 -4.9729 -5.6673 33 1 8.0536 -5.1236 -7.4881 34 1 5.6470 -5.1088 -6.9638 35 1 4.8939 -4.9658 -4.6308 36 1 4.3399 -2.2807 -2.1140 37 1 3.4514 -3.8094 -1.6902 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224071226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:46 Heat of formation + Delta-G solvation = 43.081707 kcal Electronic energy + Delta-G solvation = -18452.337386 eV Core-core repulsion = 15582.580878 eV Total energy + Delta-G solvation = -2869.756508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62398 -40.69625 -37.88507 -35.47186 -34.80043 -31.68470 -31.47073 -28.15469 -27.18686 -26.91045 -25.09780 -23.14581 -22.60404 -21.26228 -20.90933 -19.02976 -18.33409 -17.72582 -16.93549 -16.41547 -16.22809 -16.00085 -15.59756 -15.44517 -14.71750 -14.56871 -14.43513 -13.88566 -13.85156 -13.78632 -13.35439 -13.22771 -12.97473 -12.64686 -12.55076 -12.42247 -11.89499 -11.80997 -11.60457 -11.41135 -11.25890 -10.83588 -10.56972 -9.80558 -9.67915 -9.57046 -8.33067 -6.37432 0.31613 0.43870 1.31156 1.32714 1.43864 2.30392 2.45860 2.88817 2.99225 3.15856 3.19495 3.45244 3.52325 3.71496 3.99672 4.06565 4.17871 4.22550 4.29267 4.44954 4.59313 4.61806 4.68411 4.73138 4.74220 4.79855 4.80981 4.83754 4.96052 5.01587 5.15044 5.42808 5.46127 5.56339 5.67632 5.77633 5.91702 6.06334 6.24597 6.48811 6.68067 7.26057 8.83979 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.004143 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.424985 B = 6757.484141 C = 7149.222852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.521 4.521 8 H 0.034 0.966 9 C 0.143 3.857 10 N -0.487 5.487 11 C -0.001 4.001 12 C 0.079 3.921 13 O -0.362 6.362 14 C 0.118 3.882 15 H 0.119 0.881 16 C -0.059 4.059 17 C -0.135 4.135 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.179 4.179 23 C -0.009 4.009 24 H 0.268 0.732 25 H 0.031 0.969 26 H -0.004 1.004 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.318 -11.518 -9.449 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.559 4.559 8 H 0.052 0.948 9 C 0.015 3.985 10 N -0.211 5.211 11 C -0.129 4.129 12 C 0.021 3.979 13 O -0.280 6.280 14 C 0.061 3.939 15 H 0.137 0.863 16 C -0.096 4.096 17 C -0.135 4.135 18 C -0.122 4.122 19 C -0.132 4.132 20 C -0.151 4.151 21 C -0.128 4.128 22 C -0.179 4.179 23 C -0.138 4.138 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.013 0.987 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.793 -11.545 -9.050 25.446 hybrid contribution -0.396 1.253 -0.657 1.469 sum 20.396 -10.292 -9.706 24.822 Atomic orbital electron populations 1.70046 1.08125 1.28268 1.52299 1.25889 0.95678 1.03226 0.94146 0.85694 0.79489 0.78488 0.79179 1.19332 1.20133 1.17265 1.21206 0.91070 0.93277 1.50332 0.94813 1.20445 0.94943 0.87657 0.95480 1.68375 1.13406 1.21046 1.18238 1.24312 0.89672 0.98741 1.00199 1.24259 0.84295 1.00236 0.89154 1.88020 1.49172 1.30059 1.60709 1.22372 0.95201 0.87998 0.88359 0.86308 1.21786 0.94837 1.05022 0.87939 1.21952 0.96542 0.99082 0.95955 1.20515 1.01081 1.00622 0.89945 1.21434 0.92594 0.98956 1.00187 1.21296 0.97194 1.00782 0.95827 1.20885 0.99539 0.99585 0.92765 1.23316 0.95695 1.01616 0.97294 1.24394 0.97780 0.99734 0.91930 0.92262 0.95091 0.98656 0.86983 0.91345 0.85989 0.85990 0.88477 0.83956 0.82757 0.84053 0.86971 0.92600 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.01 0.48 5.47 84.65 0.46 0.95 16 3 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.52 -31.51 9.92 25.60 0.25 -31.26 16 8 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 9 C 0.14 7.14 3.62 85.56 0.31 7.45 16 10 N -0.49 -20.85 6.14 -916.45 -5.63 -26.48 16 11 C 0.00 -0.02 7.78 86.40 0.67 0.65 16 12 C 0.08 2.29 4.50 31.24 0.14 2.43 16 13 O -0.36 -10.22 10.38 -148.98 -1.55 -11.76 16 14 C 0.12 2.60 4.63 30.04 0.14 2.74 16 15 H 0.12 2.06 7.46 -2.39 -0.02 2.04 16 16 C -0.06 -1.04 7.82 27.48 0.21 -0.82 16 17 C -0.14 -2.89 7.60 -19.82 -0.15 -3.04 16 18 C -0.10 -1.91 10.04 22.26 0.22 -1.69 16 19 C -0.11 -2.00 10.06 22.26 0.22 -1.78 16 20 C -0.13 -2.73 10.03 22.21 0.22 -2.51 16 21 C -0.11 -2.73 10.05 22.38 0.22 -2.51 16 22 C -0.18 -4.45 7.14 -21.78 -0.16 -4.60 16 23 C -0.01 -0.35 7.79 86.40 0.67 0.33 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.03 1.52 7.14 -2.39 -0.02 1.51 16 26 H 0.00 -0.21 6.80 -2.38 -0.02 -0.23 16 27 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.07 2.26 7.93 -2.38 -0.02 2.24 16 29 H 0.12 2.89 7.46 -2.39 -0.02 2.87 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.14 1.84 8.06 -2.92 -0.02 1.82 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.06 2.29 7.47 -2.39 -0.02 2.27 16 37 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -72.87 310.56 -0.55 -73.42 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.99 Total: 11.74 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.45 Total: -33.65 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -5.33 Total: -86.78 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.55 Total: -11.76 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -72.87 -0.55 -73.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224071226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.500 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds