Wall clock time and date at job start Sun Mar 29 2020 23:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47343 * 240.00176 * 3 2 1 5 5 H 1.48504 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47165 * 120.00262 * 3 2 1 7 7 C 1.39941 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00122 * 195.41091 * 7 2 1 9 9 C 1.41400 * 120.00182 * 15.40869 * 7 2 1 10 10 C 1.40740 * 120.23997 * 25.41807 * 9 7 2 11 11 C 1.37592 * 119.74195 * 179.97438 * 10 9 7 12 12 C 1.38664 * 120.24880 * 359.74626 * 11 10 9 13 13 C 1.38610 * 120.49903 * 0.51175 * 12 11 10 14 14 C 1.37634 * 120.25132 * 359.49139 * 13 12 11 15 15 C 1.50702 * 120.13102 * 180.27350 * 14 13 12 16 16 N 1.46900 * 109.46998 * 107.07483 * 15 14 13 17 17 C 1.46898 * 111.00543 * 289.04399 * 16 15 14 18 18 C 1.53306 * 108.64366 * 181.91143 * 17 16 15 19 19 O 1.42926 * 108.58109 * 71.38304 * 18 17 16 20 20 C 1.42856 * 114.24269 * 307.42696 * 19 18 17 21 21 H 1.09003 * 115.36682 * 232.26506 * 20 19 18 22 22 C 1.53496 * 116.13685 * 89.11114 * 20 19 18 23 23 C 1.46341 * 110.99624 * 164.32590 * 16 15 14 24 24 H 1.08996 * 115.04280 * 290.14883 * 23 16 15 25 25 H 0.97002 * 119.99737 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.12627 * 359.96361 * 10 9 7 27 27 H 1.08002 * 119.87529 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.74834 * 180.25805 * 12 11 10 29 29 H 1.08008 * 119.87014 * 179.76265 * 13 12 11 30 30 H 1.08996 * 109.47143 * 227.07956 * 15 14 13 31 31 H 1.08997 * 109.46740 * 347.07882 * 15 14 13 32 32 H 1.09007 * 109.60405 * 301.65663 * 17 16 15 33 33 H 1.08997 * 109.60846 * 62.16419 * 17 16 15 34 34 H 1.08996 * 109.61619 * 311.65424 * 18 17 16 35 35 H 1.08998 * 109.76394 * 191.19465 * 18 17 16 36 36 H 1.08999 * 117.51979 * 142.31311 * 22 20 19 37 37 H 1.09004 * 117.52109 * 357.16637 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0588 -1.2289 0.2480 9 6 1.3391 -2.4144 -0.3264 10 6 0.1899 -2.3886 -1.1386 11 6 -0.4525 -3.5648 -1.4497 12 6 0.0312 -4.7728 -0.9707 13 6 1.1590 -4.8096 -0.1658 14 6 1.8178 -3.6454 0.1583 15 6 3.0473 -3.6891 1.0286 16 7 4.2375 -3.4277 0.2082 17 6 4.5240 -4.5619 -0.6802 18 6 5.7988 -4.2530 -1.4738 19 8 6.9165 -4.3239 -0.5858 20 6 6.7803 -3.5290 0.5933 21 1 7.6089 -2.8510 0.7978 22 6 6.1122 -4.2112 1.7952 23 6 5.3900 -3.0960 1.0468 24 1 5.3340 -2.1289 1.5463 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1862 -1.4492 -1.5158 27 1 -1.3343 -3.5475 -2.0731 28 1 -0.4771 -5.6917 -1.2234 29 1 1.5248 -5.7558 0.2048 30 1 2.9687 -2.9301 1.8070 31 1 3.1321 -4.6737 1.4884 32 1 4.6726 -5.4636 -0.0859 33 1 3.6912 -4.7073 -1.3681 34 1 5.7318 -3.2514 -1.8985 35 1 5.9206 -4.9826 -2.2743 36 1 6.5033 -3.9814 2.7863 37 1 5.7466 -5.2288 1.6577 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235525542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:36 Heat of formation + Delta-G solvation = 14.436727 kcal Electronic energy + Delta-G solvation = -19627.158389 eV Core-core repulsion = 16756.159741 eV Total energy + Delta-G solvation = -2870.998648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04642 -37.66914 -35.28095 -33.69641 -33.52748 -30.59650 -29.40175 -28.03206 -25.43237 -23.97852 -23.59506 -21.86535 -20.89337 -19.55150 -18.81804 -17.10809 -16.87151 -16.26697 -15.32056 -14.93997 -14.61367 -14.20422 -14.14719 -13.74955 -13.37088 -13.25252 -12.58505 -12.22478 -11.95842 -11.58856 -11.47590 -11.23348 -11.16769 -11.03360 -10.88578 -10.72251 -10.57727 -10.34340 -9.87359 -9.50915 -9.24454 -9.24101 -9.12227 -7.73680 -7.34479 -7.28737 -6.70120 -4.28880 2.80110 2.95906 3.09001 3.12265 3.28497 3.60802 3.96903 4.13303 4.35174 4.70173 4.72235 4.99147 5.15531 5.25786 5.51776 5.62245 5.74693 5.82983 5.86670 5.98281 6.13462 6.16410 6.23990 6.25842 6.32305 6.50468 6.52426 6.84553 7.13180 7.29012 7.30139 7.38593 7.52883 7.57137 7.69009 7.95642 8.11611 8.17890 8.35682 8.72057 8.98203 9.04870 10.23762 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.008489 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.335913 B = 3297.524758 C = 4483.886051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.132 3.868 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.247 4.247 13 C -0.086 4.086 14 C -0.199 4.199 15 C 0.133 3.867 16 N -0.486 5.486 17 C 0.020 3.980 18 C 0.059 3.941 19 O -0.360 6.360 20 C 0.023 3.977 21 H 0.130 0.870 22 C -0.238 4.238 23 C 0.020 3.980 24 H 0.127 0.873 25 H 0.279 0.721 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.019 0.981 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 -3.475 0.847 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.110 0.890 9 C 0.129 3.871 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.267 4.267 13 C -0.105 4.105 14 C -0.201 4.201 15 C 0.007 3.993 16 N -0.208 5.208 17 C -0.108 4.108 18 C -0.017 4.017 19 O -0.279 6.279 20 C -0.036 4.036 21 H 0.147 0.853 22 C -0.278 4.278 23 C -0.091 4.091 24 H 0.145 0.855 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.974 -3.009 0.521 8.539 hybrid contribution 0.114 0.127 0.591 0.615 sum 8.088 -2.882 1.112 8.658 Atomic orbital electron populations 1.69827 1.07580 1.29070 1.35877 1.25985 0.94669 1.01351 0.92493 0.86408 0.80099 0.80453 0.79951 1.18869 1.20651 1.19127 1.19751 0.97868 0.90247 1.39409 0.89025 1.17359 0.90435 0.91510 0.87803 1.21407 0.98965 0.96659 1.01370 1.20683 0.98436 0.93489 0.99850 1.20285 1.01397 0.96130 1.08855 1.20364 0.96175 0.95579 0.98379 1.19424 0.99606 0.93752 1.07334 1.20563 0.86856 0.97871 0.93961 1.61902 1.01613 1.37869 1.19434 1.22806 0.98837 0.92020 0.97109 1.22832 0.84779 1.02414 0.91710 1.87818 1.41504 1.67198 1.31348 1.23181 0.96545 0.97647 0.86193 0.85313 1.24047 1.06772 0.99811 0.97130 1.23075 0.89049 0.98668 0.98266 0.85535 0.91041 0.86388 0.89747 0.89869 0.90054 0.90583 0.96311 0.94658 0.88613 0.91483 0.88640 0.88219 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.34 10.88 55.55 0.60 -19.73 16 2 C 0.07 1.77 5.19 -17.34 -0.09 1.68 16 3 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.44 -11.22 8.24 -37.74 -0.31 -11.53 16 8 H 0.09 2.25 6.54 -52.49 -0.34 1.91 16 9 C 0.13 3.37 5.57 -106.82 -0.60 2.78 16 10 C -0.16 -4.24 8.69 -38.87 -0.34 -4.58 16 11 C -0.11 -2.50 10.02 -39.66 -0.40 -2.89 16 12 C -0.25 -5.54 10.05 -39.29 -0.39 -5.93 16 13 C -0.09 -1.90 9.38 -39.66 -0.37 -2.27 16 14 C -0.20 -4.58 4.65 -103.91 -0.48 -5.06 16 15 C 0.13 2.65 4.27 -4.97 -0.02 2.63 16 16 N -0.49 -8.92 3.91 -228.95 -0.89 -9.81 16 17 C 0.02 0.34 5.14 -3.67 -0.02 0.32 16 18 C 0.06 0.89 7.00 37.32 0.26 1.15 16 19 O -0.36 -5.69 10.82 -35.23 -0.38 -6.08 16 20 C 0.02 0.33 7.09 -26.72 -0.19 0.14 16 21 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 22 C -0.24 -3.27 9.92 -26.74 -0.27 -3.54 16 23 C 0.02 0.31 5.69 -68.53 -0.39 -0.08 16 24 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 26 H 0.12 3.15 6.14 -52.49 -0.32 2.83 16 27 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.08 1.61 7.98 -52.48 -0.42 1.19 16 30 H 0.08 1.58 7.59 -51.93 -0.39 1.18 16 31 H 0.02 0.35 7.82 -51.93 -0.41 -0.05 16 32 H 0.04 0.59 6.97 -51.92 -0.36 0.23 16 33 H 0.10 1.74 7.30 -51.93 -0.38 1.36 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.40 7.09 -51.93 -0.37 1.03 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -26.86 299.96 -9.87 -36.73 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.09 Total: 8.00 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -3.61 Total: -27.19 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: -0.29 Total: -29.54 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.38 Total: -6.08 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.86 -9.87 -36.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.167 kcal (2) G-P(sol) polarization free energy of solvation -26.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds