Wall clock time and date at job start Sun Mar 29 2020 23:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47343 * 240.00176 * 3 2 1 5 5 H 1.48504 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47165 * 120.00262 * 3 2 1 7 7 C 1.39941 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00122 * 195.41091 * 7 2 1 9 9 C 1.41400 * 120.00182 * 15.40869 * 7 2 1 10 10 C 1.40740 * 120.23997 * 25.41807 * 9 7 2 11 11 C 1.37592 * 119.74195 * 179.97438 * 10 9 7 12 12 C 1.38664 * 120.24880 * 359.74626 * 11 10 9 13 13 C 1.38610 * 120.49903 * 0.51175 * 12 11 10 14 14 C 1.37634 * 120.25132 * 359.49139 * 13 12 11 15 15 C 1.50702 * 120.13102 * 180.27350 * 14 13 12 16 16 N 1.46900 * 109.46998 * 107.07483 * 15 14 13 17 17 C 1.46898 * 111.00543 * 289.04399 * 16 15 14 18 18 C 1.53306 * 108.64366 * 181.91143 * 17 16 15 19 19 O 1.42926 * 108.58109 * 71.38304 * 18 17 16 20 20 C 1.42856 * 114.24269 * 307.42696 * 19 18 17 21 21 H 1.09003 * 115.36682 * 232.26506 * 20 19 18 22 22 C 1.53496 * 116.13685 * 89.11114 * 20 19 18 23 23 C 1.46341 * 110.99624 * 164.32590 * 16 15 14 24 24 H 1.08996 * 115.04280 * 290.14883 * 23 16 15 25 25 H 0.97002 * 119.99737 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.12627 * 359.96361 * 10 9 7 27 27 H 1.08002 * 119.87529 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.74834 * 180.25805 * 12 11 10 29 29 H 1.08008 * 119.87014 * 179.76265 * 13 12 11 30 30 H 1.08996 * 109.47143 * 227.07956 * 15 14 13 31 31 H 1.08997 * 109.46740 * 347.07882 * 15 14 13 32 32 H 1.09007 * 109.60405 * 301.65663 * 17 16 15 33 33 H 1.08997 * 109.60846 * 62.16419 * 17 16 15 34 34 H 1.08996 * 109.61619 * 311.65424 * 18 17 16 35 35 H 1.08998 * 109.76394 * 191.19465 * 18 17 16 36 36 H 1.08999 * 117.51979 * 142.31311 * 22 20 19 37 37 H 1.09004 * 117.52109 * 357.16637 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0588 -1.2289 0.2480 9 6 1.3391 -2.4144 -0.3264 10 6 0.1899 -2.3886 -1.1386 11 6 -0.4525 -3.5648 -1.4497 12 6 0.0312 -4.7728 -0.9707 13 6 1.1590 -4.8096 -0.1658 14 6 1.8178 -3.6454 0.1583 15 6 3.0473 -3.6891 1.0286 16 7 4.2375 -3.4277 0.2082 17 6 4.5240 -4.5619 -0.6802 18 6 5.7988 -4.2530 -1.4738 19 8 6.9165 -4.3239 -0.5858 20 6 6.7803 -3.5290 0.5933 21 1 7.6089 -2.8510 0.7978 22 6 6.1122 -4.2112 1.7952 23 6 5.3900 -3.0960 1.0468 24 1 5.3340 -2.1289 1.5463 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1862 -1.4492 -1.5158 27 1 -1.3343 -3.5475 -2.0731 28 1 -0.4771 -5.6917 -1.2234 29 1 1.5248 -5.7558 0.2048 30 1 2.9687 -2.9301 1.8070 31 1 3.1321 -4.6737 1.4884 32 1 4.6726 -5.4636 -0.0859 33 1 3.6912 -4.7073 -1.3681 34 1 5.7318 -3.2514 -1.8985 35 1 5.9206 -4.9826 -2.2743 36 1 6.5033 -3.9814 2.7863 37 1 5.7466 -5.2288 1.6577 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235525542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:35 Heat of formation + Delta-G solvation = -0.052163 kcal Electronic energy + Delta-G solvation = -19627.786674 eV Core-core repulsion = 16756.159741 eV Total energy + Delta-G solvation = -2871.626933 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30553 -39.41677 -36.63107 -35.44988 -34.88971 -32.22743 -31.24060 -29.48702 -27.23402 -25.51571 -24.88850 -23.05575 -22.72391 -21.25676 -20.12050 -18.96245 -18.09641 -17.58177 -17.02312 -16.39202 -16.10150 -15.75245 -15.51661 -15.23898 -14.93300 -14.71454 -14.32815 -13.65473 -13.51979 -13.33710 -12.87164 -12.85757 -12.72224 -12.52139 -12.38753 -12.22293 -12.05022 -11.98421 -11.36472 -11.24934 -10.98187 -10.83527 -10.42194 -9.23793 -9.18174 -9.00357 -8.53065 -6.19795 1.02455 1.14952 1.41220 1.50827 1.59080 2.25377 2.41290 2.82480 2.99592 3.07083 3.53714 3.85309 3.89198 3.97292 4.02937 4.23223 4.36433 4.42797 4.51021 4.57629 4.71888 4.74905 4.80108 4.80879 4.93298 5.03454 5.10760 5.14361 5.28450 5.44047 5.57716 5.82141 6.00985 6.09112 6.14550 6.25233 6.30034 6.32375 6.51062 6.83555 7.10391 7.17673 8.42637 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.008489 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.335913 B = 3297.524758 C = 4483.886051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.104 3.896 10 C -0.196 4.196 11 C -0.114 4.114 12 C -0.247 4.247 13 C -0.091 4.091 14 C -0.200 4.200 15 C 0.144 3.856 16 N -0.503 5.503 17 C 0.025 3.975 18 C 0.065 3.935 19 O -0.370 6.370 20 C 0.025 3.975 21 H 0.156 0.844 22 C -0.221 4.221 23 C -0.003 4.003 24 H 0.129 0.871 25 H 0.283 0.717 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -4.176 1.346 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.183 4.183 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.495 4.495 8 H 0.110 0.890 9 C 0.101 3.899 10 C -0.216 4.216 11 C -0.132 4.132 12 C -0.266 4.266 13 C -0.110 4.110 14 C -0.202 4.202 15 C 0.018 3.982 16 N -0.226 5.226 17 C -0.103 4.103 18 C -0.011 4.011 19 O -0.288 6.288 20 C -0.034 4.034 21 H 0.173 0.827 22 C -0.260 4.260 23 C -0.112 4.112 24 H 0.147 0.853 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.644 -3.725 1.023 10.388 hybrid contribution -0.422 0.217 0.437 0.645 sum 9.222 -3.507 1.459 9.973 Atomic orbital electron populations 1.69902 1.08956 1.30025 1.36979 1.26754 0.95326 1.04396 0.91777 0.85387 0.78780 0.76369 0.79976 1.18934 1.20019 1.18195 1.19913 0.97968 0.91043 1.40618 0.89006 1.17695 0.90919 0.92841 0.88460 1.21393 1.00358 0.96755 1.03072 1.20929 0.98914 0.93381 1.00018 1.20651 1.01323 0.96664 1.07966 1.20693 0.95893 0.96407 0.97988 1.19793 1.00451 0.93274 1.06672 1.20362 0.86765 0.97924 0.93192 1.61732 1.02164 1.38619 1.20069 1.22752 0.99051 0.91766 0.96733 1.22833 0.83791 1.02613 0.91891 1.87806 1.41539 1.67600 1.31867 1.23519 0.96236 0.97695 0.85915 0.82659 1.24056 1.05339 0.98428 0.98206 1.23113 0.88941 0.99674 0.99518 0.85342 0.90675 0.88415 0.88005 0.87078 0.87380 0.91942 0.95193 0.94301 0.90392 0.92517 0.86206 0.85678 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.73 10.88 21.83 0.24 -43.49 16 2 C 0.03 1.56 5.19 85.26 0.44 2.00 16 3 Si 0.97 38.51 29.59 68.60 2.03 40.54 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.47 -24.16 8.24 23.46 0.19 -23.97 16 8 H 0.09 4.61 6.54 -2.91 -0.02 4.59 16 9 C 0.10 5.43 5.57 -21.29 -0.12 5.31 16 10 C -0.20 -10.42 8.69 22.73 0.20 -10.22 16 11 C -0.11 -5.38 10.02 22.22 0.22 -5.16 16 12 C -0.25 -10.72 10.05 22.46 0.23 -10.49 16 13 C -0.09 -3.90 9.38 22.22 0.21 -3.70 16 14 C -0.20 -9.20 4.65 -19.41 -0.09 -9.29 16 15 C 0.14 5.67 4.27 85.56 0.37 6.03 16 16 N -0.50 -18.11 3.91 -878.26 -3.43 -21.55 16 17 C 0.02 0.81 5.14 86.41 0.44 1.26 16 18 C 0.06 1.86 7.00 72.08 0.50 2.36 16 19 O -0.37 -10.79 10.82 -148.98 -1.61 -12.40 16 20 C 0.02 0.64 7.09 30.60 0.22 0.85 16 21 H 0.16 3.18 8.14 -2.39 -0.02 3.16 16 22 C -0.22 -5.48 9.92 30.59 0.30 -5.17 16 23 C 0.00 -0.08 5.69 44.69 0.25 0.18 16 24 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 25 H 0.28 13.66 8.30 -92.71 -0.77 12.89 16 26 H 0.10 5.49 6.14 -2.91 -0.02 5.47 16 27 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 29 H 0.11 4.01 7.98 -2.91 -0.02 3.98 16 30 H 0.06 2.61 7.59 -2.39 -0.02 2.59 16 31 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16 32 H 0.04 1.23 6.97 -2.38 -0.02 1.21 16 33 H 0.08 2.80 7.30 -2.39 -0.02 2.78 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.12 2.79 8.14 -2.39 -0.02 2.78 16 36 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.08 2.30 7.09 -2.38 -0.02 2.29 16 Total: -1.00 -58.02 299.96 1.65 -56.36 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 1.06 Total: 30.56 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 3.37 Total: -50.02 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -3.19 Total: -65.04 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.61 Total: -12.40 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -58.02 1.65 -56.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.310 kcal (2) G-P(sol) polarization free energy of solvation -58.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds