Wall clock time and date at job start Sun Mar 29 2020 23:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 119.99910 * 2 1 4 4 H 1.08001 * 120.00015 * 202.34556 * 3 2 1 5 5 C 1.38818 * 119.99945 * 22.35596 * 3 2 1 6 6 N 1.31616 * 119.99555 * 11.34311 * 5 3 2 7 7 Si 1.86800 * 119.99949 * 191.34094 * 5 3 2 8 8 H 1.48497 * 109.47106 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.46608 * 119.99993 * 7 5 3 10 10 H 1.48496 * 109.47123 * 239.99754 * 7 5 3 11 11 C 1.46503 * 120.00154 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.46796 * 269.99773 * 11 2 1 13 13 C 1.34615 * 125.89031 * 94.99689 * 12 11 2 14 14 N 1.37173 * 106.82879 * 180.02562 * 13 12 11 15 15 C 1.39834 * 126.49110 * 179.97438 * 14 13 12 16 16 C 1.39119 * 120.07899 * 180.02562 * 15 14 13 17 17 N 1.31982 * 119.91675 * 180.02562 * 16 15 14 18 18 C 1.32225 * 120.06523 * 0.02562 * 17 16 15 19 19 C 1.38258 * 120.14640 * 0.24686 * 18 17 16 20 20 N 1.32179 * 120.08331 * 359.48540 * 19 18 17 21 21 C 1.35928 * 107.02595 * 0.24572 * 14 13 12 22 22 N 1.30482 * 108.55132 * 359.59540 * 21 14 13 23 23 H 1.08993 * 109.47303 * 274.20356 * 1 2 3 24 24 H 1.08998 * 109.47436 * 34.20710 * 1 2 3 25 25 H 1.09004 * 109.47288 * 154.20324 * 1 2 3 26 26 H 0.97002 * 119.99431 * 179.97438 * 6 5 3 27 27 H 1.08994 * 109.47305 * 150.00169 * 11 2 1 28 28 H 1.09001 * 109.47340 * 29.99186 * 11 2 1 29 29 H 1.07998 * 126.58978 * 359.97438 * 13 12 11 30 30 H 1.08005 * 120.03713 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.92893 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.95633 * 179.74554 * 19 18 17 33 33 H 1.08001 * 125.71977 * 179.72363 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5338 2.3429 0.4573 6 7 0.3842 2.2689 1.0939 7 14 2.3366 4.0048 0.1691 8 1 3.6143 3.8168 -0.5640 9 1 1.4267 4.8616 -0.6328 10 1 2.6073 4.6569 1.4754 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 1.6842 -2.5532 2.1321 14 7 2.2681 -2.6725 3.3677 15 6 1.8100 -3.4554 4.4318 16 6 2.5104 -3.4770 5.6337 17 7 2.0754 -4.2176 6.6358 18 6 0.9757 -4.9386 6.4981 19 6 0.2806 -4.9235 5.3030 20 7 0.7081 -4.1799 4.2973 21 6 3.3729 -1.8807 3.3639 22 7 3.4724 -1.3125 2.1935 23 1 -0.3633 0.0753 1.0248 24 1 -0.3634 0.8499 -0.5777 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0459 3.0773 1.4138 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5146 29 1 0.7836 -3.0452 1.7957 30 1 3.4089 -2.8884 5.7464 31 1 0.6219 -5.5442 7.3194 32 1 -0.6150 -5.5169 5.1924 33 1 4.0552 -1.7463 4.1902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238817248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:43 Heat of formation + Delta-G solvation = 155.038593 kcal Electronic energy + Delta-G solvation = -18483.294089 eV Core-core repulsion = 15547.144803 eV Total energy + Delta-G solvation = -2936.149286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17014 -40.83246 -35.68810 -34.86180 -33.73594 -31.39744 -30.30186 -29.26572 -26.37775 -25.65594 -24.84661 -24.23142 -21.42011 -21.19803 -19.66336 -18.32341 -17.42891 -16.98294 -16.59924 -15.83797 -15.27345 -14.73392 -14.25757 -14.08514 -13.66844 -13.37483 -13.33096 -12.97403 -12.79360 -11.92511 -11.68123 -11.48867 -11.12545 -10.84220 -10.62068 -10.51760 -10.24805 -9.89245 -9.83750 -9.52287 -9.49569 -8.79717 -8.47089 -7.93213 -6.71456 -5.63745 -3.07413 0.29650 0.73545 2.42074 2.52202 3.44047 3.50321 3.51770 3.54620 3.67074 3.90218 3.91827 4.02708 4.61381 4.72358 4.75759 4.90245 5.09077 5.26484 5.54683 5.76952 5.85299 5.90842 6.04532 6.37813 6.47330 6.72432 6.82076 6.90987 7.19768 7.37187 7.44281 7.55142 7.80004 7.93082 8.45981 8.52938 9.32777 9.94075 10.42236 11.41819 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.030801 B = 0.004824 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.835518 B = 5803.308190 C = 5924.887192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.589 5.589 3 C -0.238 4.238 4 H 0.073 0.927 5 C -0.001 4.001 6 N -0.911 5.911 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.219 3.781 12 C 0.023 3.977 13 C -0.045 4.045 14 N -0.417 5.417 15 C 0.322 3.678 16 C 0.039 3.961 17 N -0.411 5.411 18 C 0.017 3.983 19 C 0.091 3.909 20 N -0.459 5.459 21 C 0.178 3.822 22 N -0.443 5.443 23 H 0.025 0.975 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.249 0.751 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -15.574 8.833 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.309 5.309 3 C -0.368 4.368 4 H 0.090 0.910 5 C -0.199 4.199 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.090 3.910 12 C -0.105 4.105 13 C -0.173 4.173 14 N -0.103 5.103 15 C 0.090 3.910 16 C -0.125 4.125 17 N -0.124 5.124 18 C -0.143 4.143 19 C -0.070 4.070 20 N -0.178 5.178 21 C -0.103 4.103 22 N -0.160 5.160 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.191 0.809 30 H 0.192 0.808 31 H 0.192 0.808 32 H 0.195 0.805 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.222 -14.858 8.565 17.194 hybrid contribution -0.497 0.484 0.613 0.926 sum 0.724 -14.374 9.178 17.070 Atomic orbital electron populations 1.20812 0.82346 0.95662 0.99223 1.44172 1.01928 1.00494 1.84343 1.19316 0.98008 0.84795 1.34688 0.90967 1.25047 0.97746 0.98603 0.98466 1.70093 1.18012 1.26753 1.40844 0.86151 0.78707 0.84246 0.77323 1.20177 1.21781 1.21909 1.19405 0.96638 0.88341 0.86653 1.22607 0.91745 0.95246 1.00933 1.22572 1.02864 1.07271 0.84544 1.43138 1.22542 1.34553 1.10062 1.19385 0.91794 0.91717 0.88143 1.23287 1.01487 0.99706 0.88053 1.68436 1.11864 1.03276 1.28847 1.23717 0.92727 0.98976 0.98860 1.23696 0.99793 0.94788 0.88769 1.67892 1.11318 1.06235 1.32315 1.25337 0.90596 0.94966 0.99407 1.70287 1.23914 1.20685 1.01094 0.95637 0.93393 0.98384 0.94028 0.92064 0.92649 0.80943 0.80771 0.80772 0.80512 0.77753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 9.01 59.85 0.54 4.71 16 2 N -0.59 -15.37 2.91 -182.50 -0.53 -15.90 16 3 C -0.24 -6.81 9.67 -15.06 -0.15 -6.96 16 4 H 0.07 2.05 7.84 -52.49 -0.41 1.64 16 5 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 6 N -0.91 -27.62 10.59 55.49 0.59 -27.04 16 7 Si 0.91 22.80 29.57 -169.99 -5.03 17.77 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 11 C 0.22 4.76 6.24 -5.19 -0.03 4.73 16 12 C 0.02 0.48 6.66 -82.86 -0.55 -0.07 16 13 C -0.05 -0.86 11.09 -16.44 -0.18 -1.04 16 14 N -0.42 -6.98 2.98 -63.71 -0.19 -7.17 16 15 C 0.32 4.59 7.51 -154.07 -1.16 3.43 16 16 C 0.04 0.46 10.65 -17.16 -0.18 0.27 16 17 N -0.41 -4.55 10.49 -12.91 -0.14 -4.68 16 18 C 0.02 0.15 11.21 -17.37 -0.19 -0.05 16 19 C 0.09 0.85 11.22 -17.39 -0.20 0.65 16 20 N -0.46 -6.23 10.06 -12.10 -0.12 -6.35 16 21 C 0.18 2.99 11.91 -89.58 -1.07 1.92 16 22 N -0.44 -9.41 11.24 -10.67 -0.12 -9.53 16 23 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 24 H 0.05 1.30 7.19 -51.93 -0.37 0.92 16 25 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 26 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 28 H 0.06 1.04 7.86 -51.93 -0.41 0.63 16 29 H 0.17 3.02 8.06 -52.49 -0.42 2.60 16 30 H 0.18 1.59 6.77 -52.48 -0.36 1.24 16 31 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 32 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.21 2.40 7.06 -52.49 -0.37 2.03 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -35.64 291.98 -7.93 -43.57 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.53 Total: -2.53 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -3.26 Total: 7.48 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -0.51 Total: -70.69 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.64 -7.93 -43.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238817248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.611 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds