Wall clock time and date at job start Sun Mar 29 2020 23:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 119.99910 * 2 1 4 4 H 1.08001 * 120.00015 * 202.34556 * 3 2 1 5 5 C 1.38818 * 119.99945 * 22.35596 * 3 2 1 6 6 N 1.31616 * 119.99555 * 11.34311 * 5 3 2 7 7 Si 1.86800 * 119.99949 * 191.34094 * 5 3 2 8 8 H 1.48497 * 109.47106 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.46608 * 119.99993 * 7 5 3 10 10 H 1.48496 * 109.47123 * 239.99754 * 7 5 3 11 11 C 1.46503 * 120.00154 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.46796 * 269.99773 * 11 2 1 13 13 C 1.34615 * 125.89031 * 94.99689 * 12 11 2 14 14 N 1.37173 * 106.82879 * 180.02562 * 13 12 11 15 15 C 1.39834 * 126.49110 * 179.97438 * 14 13 12 16 16 C 1.39119 * 120.07899 * 180.02562 * 15 14 13 17 17 N 1.31982 * 119.91675 * 180.02562 * 16 15 14 18 18 C 1.32225 * 120.06523 * 0.02562 * 17 16 15 19 19 C 1.38258 * 120.14640 * 0.24686 * 18 17 16 20 20 N 1.32179 * 120.08331 * 359.48540 * 19 18 17 21 21 C 1.35928 * 107.02595 * 0.24572 * 14 13 12 22 22 N 1.30482 * 108.55132 * 359.59540 * 21 14 13 23 23 H 1.08993 * 109.47303 * 274.20356 * 1 2 3 24 24 H 1.08998 * 109.47436 * 34.20710 * 1 2 3 25 25 H 1.09004 * 109.47288 * 154.20324 * 1 2 3 26 26 H 0.97002 * 119.99431 * 179.97438 * 6 5 3 27 27 H 1.08994 * 109.47305 * 150.00169 * 11 2 1 28 28 H 1.09001 * 109.47340 * 29.99186 * 11 2 1 29 29 H 1.07998 * 126.58978 * 359.97438 * 13 12 11 30 30 H 1.08005 * 120.03713 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.92893 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.95633 * 179.74554 * 19 18 17 33 33 H 1.08001 * 125.71977 * 179.72363 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5338 2.3429 0.4573 6 7 0.3842 2.2689 1.0939 7 14 2.3366 4.0048 0.1691 8 1 3.6143 3.8168 -0.5640 9 1 1.4267 4.8616 -0.6328 10 1 2.6073 4.6569 1.4754 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 1.6842 -2.5532 2.1321 14 7 2.2681 -2.6725 3.3677 15 6 1.8100 -3.4554 4.4318 16 6 2.5104 -3.4770 5.6337 17 7 2.0754 -4.2176 6.6358 18 6 0.9757 -4.9386 6.4981 19 6 0.2806 -4.9235 5.3030 20 7 0.7081 -4.1799 4.2973 21 6 3.3729 -1.8807 3.3639 22 7 3.4724 -1.3125 2.1935 23 1 -0.3633 0.0753 1.0248 24 1 -0.3634 0.8499 -0.5777 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0459 3.0773 1.4138 27 1 3.1499 -1.1382 -0.5143 28 1 1.6084 -2.0282 -0.5146 29 1 0.7836 -3.0452 1.7957 30 1 3.4089 -2.8884 5.7464 31 1 0.6219 -5.5442 7.3194 32 1 -0.6150 -5.5169 5.1924 33 1 4.0552 -1.7463 4.1902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238817248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:43 Heat of formation + Delta-G solvation = 131.811394 kcal Electronic energy + Delta-G solvation = -18484.301296 eV Core-core repulsion = 15547.144803 eV Total energy + Delta-G solvation = -2937.156492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.38804 -41.82764 -37.52960 -35.95911 -34.85010 -33.35694 -31.37779 -30.84983 -28.10137 -27.54429 -25.78368 -25.40772 -23.29418 -22.43256 -21.08532 -19.50593 -18.72269 -18.32888 -17.81686 -17.02853 -16.73009 -16.16050 -15.62739 -15.44232 -15.10531 -15.00693 -14.80467 -14.68342 -13.97042 -13.39252 -13.03068 -12.85027 -12.80294 -12.64821 -12.52589 -12.22419 -12.00401 -11.86479 -11.56867 -11.00104 -10.63892 -10.36381 -9.91678 -9.34842 -8.79868 -7.80585 -5.27175 -0.59835 -0.10422 1.20243 1.40540 1.45239 1.45964 1.57405 2.14201 2.55860 2.63934 3.02755 3.10143 3.20480 3.34831 3.68924 3.83224 3.89754 3.99848 4.27486 4.40228 4.45180 4.48478 4.85097 4.87411 5.01918 5.07633 5.21596 5.33991 5.63663 5.71267 5.75900 5.95677 6.31963 6.35396 6.59238 7.09656 7.19905 7.88546 8.31085 9.23582 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.030801 B = 0.004824 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.835518 B = 5803.308190 C = 5924.887192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.606 5.606 3 C -0.243 4.243 4 H 0.067 0.933 5 C -0.056 4.056 6 N -0.944 5.944 7 Si 0.967 3.033 8 H -0.266 1.266 9 H -0.288 1.288 10 H -0.296 1.296 11 C 0.219 3.781 12 C -0.009 4.009 13 C -0.040 4.040 14 N -0.416 5.416 15 C 0.282 3.718 16 C 0.043 3.957 17 N -0.428 5.428 18 C 0.041 3.959 19 C 0.090 3.910 20 N -0.488 5.488 21 C 0.191 3.809 22 N -0.498 5.498 23 H -0.007 1.007 24 H 0.021 0.979 25 H 0.036 0.964 26 H 0.244 0.756 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.181 0.819 30 H 0.194 0.806 31 H 0.221 0.779 32 H 0.217 0.783 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -17.477 10.679 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.327 5.327 3 C -0.373 4.373 4 H 0.085 0.915 5 C -0.250 4.250 6 N -0.592 5.592 7 Si 0.796 3.204 8 H -0.190 1.190 9 H -0.215 1.215 10 H -0.224 1.224 11 C 0.092 3.908 12 C -0.137 4.137 13 C -0.170 4.170 14 N -0.100 5.100 15 C 0.053 3.947 16 C -0.118 4.118 17 N -0.142 5.142 18 C -0.119 4.119 19 C -0.071 4.071 20 N -0.206 5.206 21 C -0.091 4.091 22 N -0.215 5.215 23 H 0.011 0.989 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.198 0.802 30 H 0.211 0.789 31 H 0.237 0.763 32 H 0.234 0.766 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.286 -16.810 10.431 19.825 hybrid contribution -0.563 0.766 0.232 0.978 sum 0.723 -16.044 10.663 19.278 Atomic orbital electron populations 1.20518 0.82380 0.96338 0.97078 1.44309 1.02189 1.01359 1.84891 1.19529 0.97789 0.86216 1.33810 0.91495 1.25765 0.98527 1.01817 0.98921 1.70268 1.19433 1.27026 1.42434 0.85183 0.78208 0.80143 0.76868 1.19037 1.21471 1.22367 1.19433 0.96342 0.87285 0.87771 1.22292 0.93274 0.97369 1.00735 1.22579 1.02462 1.06488 0.85428 1.43130 1.22188 1.34609 1.10068 1.19531 0.93480 0.93423 0.88300 1.23553 1.01675 0.99515 0.87101 1.68575 1.13123 1.04000 1.28455 1.24538 0.90875 0.96949 0.99584 1.24443 1.00755 0.93923 0.88006 1.67822 1.11463 1.06883 1.34423 1.26078 0.90634 0.93178 0.99179 1.70187 1.25177 1.23134 1.03042 0.98862 0.96020 0.94575 0.94650 0.92678 0.89892 0.80234 0.78875 0.76304 0.76632 0.73456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.42 9.01 127.77 1.15 10.57 16 2 N -0.61 -32.25 2.91 -731.31 -2.13 -34.37 16 3 C -0.24 -14.21 9.67 84.04 0.81 -13.39 16 4 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 5 C -0.06 -3.35 5.13 84.86 0.44 -2.91 16 6 N -0.94 -58.91 10.59 21.65 0.23 -58.69 16 7 Si 0.97 47.82 29.57 68.60 2.03 49.85 16 8 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 10 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 11 C 0.22 9.66 6.24 85.63 0.53 10.19 16 12 C -0.01 -0.39 6.66 41.37 0.28 -0.11 16 13 C -0.04 -1.53 11.09 83.03 0.92 -0.61 16 14 N -0.42 -13.64 2.98 -355.48 -1.06 -14.70 16 15 C 0.28 7.60 7.51 132.73 1.00 8.60 16 16 C 0.04 0.91 10.65 84.88 0.90 1.82 16 17 N -0.43 -8.03 10.49 -194.75 -2.04 -10.07 16 18 C 0.04 0.53 11.21 84.64 0.95 1.48 16 19 C 0.09 1.36 11.22 84.65 0.95 2.31 16 20 N -0.49 -12.26 10.06 -192.18 -1.93 -14.19 16 21 C 0.19 6.28 11.91 179.98 2.14 8.43 16 22 N -0.50 -21.38 11.24 -187.69 -2.11 -23.49 16 23 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 24 H 0.02 1.19 7.19 -2.39 -0.02 1.17 16 25 H 0.04 1.55 7.84 -2.38 -0.02 1.53 16 26 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.05 2.44 8.03 -2.39 -0.02 2.42 16 28 H 0.08 3.09 7.86 -2.39 -0.02 3.07 16 29 H 0.18 6.28 8.06 -2.91 -0.02 6.26 16 30 H 0.19 3.04 6.77 -2.91 -0.02 3.02 16 31 H 0.22 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.25 5.32 7.06 -2.91 -0.02 5.30 16 Total: -1.00 -80.32 291.98 4.18 -76.14 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.12 Total: 3.18 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 10.07 Total: 26.35 kcal Atomic # 7 Polarization: -146.47 SS G_CDS: -9.04 Total: -155.51 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -80.32 4.18 -76.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238817248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.948 kcal (2) G-P(sol) polarization free energy of solvation -80.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds