Wall clock time and date at job start Mon Mar 30 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47097 * 339.28133 * 3 2 1 5 5 C 1.36942 * 119.99543 * 263.98344 * 4 3 2 6 6 H 1.07999 * 119.99726 * 197.45470 * 5 4 3 7 7 C 1.38815 * 120.00294 * 17.46412 * 5 4 3 8 8 N 1.31624 * 119.99801 * 23.77094 * 7 5 4 9 9 Si 1.86800 * 120.00099 * 203.77166 * 7 5 4 10 10 H 1.48499 * 109.46960 * 59.99717 * 9 7 5 11 11 H 1.48496 * 109.46878 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46933 * 299.99768 * 9 7 5 13 13 C 1.46495 * 120.00532 * 83.98503 * 4 3 2 14 14 C 1.50696 * 109.47394 * 89.99862 * 13 4 3 15 15 C 1.38162 * 120.02656 * 90.00083 * 14 13 4 16 16 C 1.50700 * 119.97394 * 359.97438 * 15 14 13 17 17 C 1.38247 * 120.05452 * 179.97438 * 15 14 13 18 18 C 1.38290 * 120.11310 * 0.04541 * 17 15 14 19 19 C 1.38119 * 120.05424 * 0.23426 * 18 17 15 20 20 C 1.38709 * 120.02646 * 269.98160 * 14 13 4 21 21 O 1.35898 * 120.05919 * 359.97438 * 20 14 13 22 22 C 1.42904 * 117.00045 * 179.97438 * 21 20 14 23 23 H 4.40644 * 5.51393 * 180.02562 * 4 1 2 24 24 H 1.08992 * 109.47403 * 219.27861 * 3 2 1 25 25 H 1.09006 * 109.47050 * 99.27339 * 3 2 1 26 26 H 0.96995 * 120.00019 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46964 * 329.99503 * 13 4 3 28 28 H 1.08997 * 109.47364 * 210.00578 * 13 4 3 29 29 H 1.09008 * 109.46738 * 269.97706 * 16 15 14 30 30 H 1.09001 * 109.47397 * 29.97384 * 16 15 14 31 31 H 1.08996 * 109.47589 * 149.97965 * 16 15 14 32 32 H 1.08001 * 119.94184 * 180.02562 * 17 15 14 33 33 H 1.07994 * 119.97218 * 179.97438 * 18 17 15 34 34 H 1.07997 * 120.03074 * 179.72693 * 19 18 17 35 35 H 1.09001 * 109.47075 * 59.99905 * 22 21 20 36 36 H 1.08999 * 109.46575 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.47301 * 299.99927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2910 0.4887 5 6 3.4803 -1.4386 1.8055 6 1 4.0934 -2.2729 2.1127 7 6 3.0423 -0.5159 2.7456 8 7 1.9629 0.2001 2.5118 9 14 3.9849 -0.2903 4.3426 10 1 5.3747 0.1370 4.0409 11 1 3.3170 0.7468 5.1692 12 1 4.0125 -1.5751 5.0867 13 6 3.2542 -2.4248 -0.4314 14 6 4.6271 -2.4252 -1.0528 15 6 5.6617 -3.1086 -0.4433 16 6 5.4169 -3.8535 0.8437 17 6 6.9212 -3.1098 -1.0131 18 6 7.1493 -2.4264 -2.1936 19 6 6.1198 -1.7369 -2.8037 20 6 4.8530 -1.7396 -2.2373 21 8 3.8369 -1.0674 -2.8391 22 6 4.1425 -0.3834 -4.0561 23 1 -1.0499 -0.0004 -0.0001 24 1 3.0090 0.7962 0.6505 25 1 3.0092 0.1664 -1.0143 26 1 1.6570 0.8450 3.1685 27 1 2.5009 -2.3381 -1.2144 28 1 3.1031 -3.3548 0.1166 29 1 5.6009 -3.1894 1.6884 30 1 4.3838 -4.2000 0.8722 31 1 6.0890 -4.7096 0.9015 32 1 7.7285 -3.6450 -0.5354 33 1 8.1342 -2.4285 -2.6365 34 1 6.2994 -1.1997 -3.7233 35 1 4.4984 -1.1002 -4.7962 36 1 3.2456 0.1100 -4.4306 37 1 4.9164 0.3611 -3.8700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262376282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:44 Heat of formation + Delta-G solvation = 72.251630 kcal Electronic energy + Delta-G solvation = -19671.072457 eV Core-core repulsion = 16802.580852 eV Total energy + Delta-G solvation = -2868.491605 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88953 -37.34519 -35.83009 -32.59853 -31.48812 -31.11873 -29.74687 -27.24297 -26.62735 -26.04690 -25.08231 -22.14668 -21.07043 -19.92387 -17.37755 -17.25277 -16.28314 -15.82308 -15.56843 -15.26330 -14.83629 -13.82986 -13.66724 -13.54968 -13.24673 -13.06747 -12.85628 -12.28442 -11.88721 -11.83708 -11.61102 -11.37092 -11.15435 -11.07936 -10.73254 -10.61337 -10.48957 -10.34814 -10.05062 -9.80820 -8.84661 -8.66221 -8.31426 -8.11580 -7.67880 -6.87598 -5.69984 -3.08716 1.79560 1.90950 3.41419 3.48824 3.49888 3.65959 4.12991 4.37570 4.51388 4.62722 5.11624 5.21341 5.30332 5.34231 5.39532 5.49681 5.64158 5.67363 5.78932 5.88056 5.91308 6.00222 6.11225 6.20133 6.33764 6.51262 6.58131 6.79070 6.84444 6.90568 6.94474 7.16198 7.32902 7.34891 7.53879 7.84942 7.86762 8.37629 9.20176 9.30942 9.87932 10.36282 11.33761 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.008812 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.775173 B = 3176.793649 C = 4282.487533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.089 4.089 3 C 0.267 3.733 4 N -0.575 5.575 5 C -0.265 4.265 6 H 0.082 0.918 7 C 0.002 3.998 8 N -0.886 5.886 9 Si 0.891 3.109 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.186 3.814 14 C -0.110 4.110 15 C -0.032 4.032 16 C -0.117 4.117 17 C -0.163 4.163 18 C -0.094 4.094 19 C -0.221 4.221 20 C 0.134 3.866 21 O -0.307 6.307 22 C 0.030 3.970 23 H 0.189 0.811 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.253 0.747 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 -3.811 -10.712 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.092 4.092 3 C 0.142 3.858 4 N -0.294 5.294 5 C -0.394 4.394 6 H 0.099 0.901 7 C -0.197 4.197 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.060 3.940 14 C -0.113 4.113 15 C -0.033 4.033 16 C -0.173 4.173 17 C -0.181 4.181 18 C -0.112 4.112 19 C -0.240 4.240 20 C 0.088 3.912 21 O -0.220 6.220 22 C -0.066 4.066 23 H 0.206 0.794 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.719 -3.664 -10.509 13.000 hybrid contribution 0.454 0.420 0.784 0.998 sum 7.172 -3.243 -9.725 12.511 Atomic orbital electron populations 1.24137 0.95297 1.04686 1.08654 1.24364 0.95335 0.96226 0.93248 1.17788 0.82656 0.89311 0.96040 1.43956 1.74346 1.05524 1.05560 1.19363 1.25829 1.11182 0.82994 0.90087 1.24869 0.96362 1.00931 0.97492 1.70167 1.19972 1.27267 1.35489 0.86537 0.80064 0.77588 0.83725 1.21168 1.21843 1.21012 1.19639 0.89626 0.92001 0.92755 1.20256 1.00098 0.98188 0.92801 1.19569 0.92105 0.95991 0.95586 1.20979 1.02474 0.98867 0.94957 1.20847 0.96642 1.03442 0.97212 1.20693 0.97841 0.97069 0.95626 1.21059 0.93257 1.06894 1.02814 1.18839 0.86573 0.93045 0.92742 1.86166 1.34510 1.63713 1.37589 1.22960 1.02520 0.95941 0.85167 0.79419 0.89447 0.93661 0.93675 0.93164 0.92196 0.89800 0.90729 0.92738 0.86750 0.86803 0.86418 0.93324 0.88684 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.35 19.25 29.55 0.57 -6.78 16 2 C -0.09 -2.26 11.58 -37.12 -0.43 -2.69 16 3 C 0.27 6.64 5.41 -6.83 -0.04 6.61 16 4 N -0.58 -14.25 2.47 -177.95 -0.44 -14.69 16 5 C -0.27 -7.01 9.52 -15.06 -0.14 -7.16 16 6 H 0.08 2.03 4.99 -52.49 -0.26 1.77 16 7 C 0.00 0.07 4.80 -17.43 -0.08 -0.02 16 8 N -0.89 -25.55 9.64 55.49 0.53 -25.02 16 9 Si 0.89 21.61 29.62 -169.99 -5.03 16.57 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.19 3.99 5.18 -5.20 -0.03 3.97 16 14 C -0.11 -2.12 5.48 -104.48 -0.57 -2.69 16 15 C -0.03 -0.56 5.88 -104.65 -0.62 -1.17 16 16 C -0.12 -1.91 8.42 36.01 0.30 -1.61 16 17 C -0.16 -2.52 9.70 -39.56 -0.38 -2.90 16 18 C -0.09 -1.36 10.04 -39.61 -0.40 -1.76 16 19 C -0.22 -3.37 9.04 -39.43 -0.36 -3.73 16 20 C 0.13 2.37 6.66 -39.21 -0.26 2.11 16 21 O -0.31 -5.27 8.03 -19.42 -0.16 -5.42 16 22 C 0.03 0.36 9.81 101.05 0.99 1.35 16 23 H 0.19 3.76 7.80 -54.10 -0.42 3.34 16 24 H 0.09 2.37 6.50 -51.93 -0.34 2.03 16 25 H 0.05 1.04 6.55 -51.93 -0.34 0.70 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.05 1.09 7.46 -51.93 -0.39 0.70 16 28 H 0.06 1.26 5.84 -51.93 -0.30 0.95 16 29 H 0.08 1.50 6.58 -51.92 -0.34 1.16 16 30 H 0.07 1.26 5.93 -51.93 -0.31 0.95 16 31 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 35 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -30.79 305.77 -6.58 -37.37 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.65 Total: 3.04 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.44 Total: -16.46 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.09 Total: -39.71 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.16 Total: -5.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.79 -6.58 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262376282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.619 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds