Wall clock time and date at job start Mon Mar 30 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47097 * 339.28133 * 3 2 1 5 5 C 1.36942 * 119.99543 * 263.98344 * 4 3 2 6 6 H 1.07999 * 119.99726 * 197.45470 * 5 4 3 7 7 C 1.38815 * 120.00294 * 17.46412 * 5 4 3 8 8 N 1.31624 * 119.99801 * 23.77094 * 7 5 4 9 9 Si 1.86800 * 120.00099 * 203.77166 * 7 5 4 10 10 H 1.48499 * 109.46960 * 59.99717 * 9 7 5 11 11 H 1.48496 * 109.46878 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46933 * 299.99768 * 9 7 5 13 13 C 1.46495 * 120.00532 * 83.98503 * 4 3 2 14 14 C 1.50696 * 109.47394 * 89.99862 * 13 4 3 15 15 C 1.38162 * 120.02656 * 90.00083 * 14 13 4 16 16 C 1.50700 * 119.97394 * 359.97438 * 15 14 13 17 17 C 1.38247 * 120.05452 * 179.97438 * 15 14 13 18 18 C 1.38290 * 120.11310 * 0.04541 * 17 15 14 19 19 C 1.38119 * 120.05424 * 0.23426 * 18 17 15 20 20 C 1.38709 * 120.02646 * 269.98160 * 14 13 4 21 21 O 1.35898 * 120.05919 * 359.97438 * 20 14 13 22 22 C 1.42904 * 117.00045 * 179.97438 * 21 20 14 23 23 H 4.40644 * 5.51393 * 180.02562 * 4 1 2 24 24 H 1.08992 * 109.47403 * 219.27861 * 3 2 1 25 25 H 1.09006 * 109.47050 * 99.27339 * 3 2 1 26 26 H 0.96995 * 120.00019 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46964 * 329.99503 * 13 4 3 28 28 H 1.08997 * 109.47364 * 210.00578 * 13 4 3 29 29 H 1.09008 * 109.46738 * 269.97706 * 16 15 14 30 30 H 1.09001 * 109.47397 * 29.97384 * 16 15 14 31 31 H 1.08996 * 109.47589 * 149.97965 * 16 15 14 32 32 H 1.08001 * 119.94184 * 180.02562 * 17 15 14 33 33 H 1.07994 * 119.97218 * 179.97438 * 18 17 15 34 34 H 1.07997 * 120.03074 * 179.72693 * 19 18 17 35 35 H 1.09001 * 109.47075 * 59.99905 * 22 21 20 36 36 H 1.08999 * 109.46575 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.47301 * 299.99927 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2910 0.4887 5 6 3.4803 -1.4386 1.8055 6 1 4.0934 -2.2729 2.1127 7 6 3.0423 -0.5159 2.7456 8 7 1.9629 0.2001 2.5118 9 14 3.9849 -0.2903 4.3426 10 1 5.3747 0.1370 4.0409 11 1 3.3170 0.7468 5.1692 12 1 4.0125 -1.5751 5.0867 13 6 3.2542 -2.4248 -0.4314 14 6 4.6271 -2.4252 -1.0528 15 6 5.6617 -3.1086 -0.4433 16 6 5.4169 -3.8535 0.8437 17 6 6.9212 -3.1098 -1.0131 18 6 7.1493 -2.4264 -2.1936 19 6 6.1198 -1.7369 -2.8037 20 6 4.8530 -1.7396 -2.2373 21 8 3.8369 -1.0674 -2.8391 22 6 4.1425 -0.3834 -4.0561 23 1 -1.0499 -0.0004 -0.0001 24 1 3.0090 0.7962 0.6505 25 1 3.0092 0.1664 -1.0143 26 1 1.6570 0.8450 3.1685 27 1 2.5009 -2.3381 -1.2144 28 1 3.1031 -3.3548 0.1166 29 1 5.6009 -3.1894 1.6884 30 1 4.3838 -4.2000 0.8722 31 1 6.0890 -4.7096 0.9015 32 1 7.7285 -3.6450 -0.5354 33 1 8.1342 -2.4285 -2.6365 34 1 6.2994 -1.1997 -3.7233 35 1 4.4984 -1.1002 -4.7962 36 1 3.2456 0.1100 -4.4306 37 1 4.9164 0.3611 -3.8700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262376282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:44 Heat of formation + Delta-G solvation = 55.813877 kcal Electronic energy + Delta-G solvation = -19671.785252 eV Core-core repulsion = 16802.580852 eV Total energy + Delta-G solvation = -2869.204400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14032 -38.62160 -37.60436 -34.10379 -33.45568 -32.62400 -31.30053 -28.42320 -28.03530 -27.81405 -26.65357 -23.85294 -22.38854 -21.32893 -19.29858 -18.47418 -18.08913 -17.18857 -17.07640 -16.54090 -16.36945 -15.55454 -15.27116 -14.97042 -14.80333 -14.53380 -14.29174 -13.77947 -13.38176 -13.15676 -13.05791 -12.96594 -12.71972 -12.63813 -12.45937 -12.18468 -11.89920 -11.84345 -11.69500 -11.53617 -10.77652 -10.62160 -10.28523 -9.44396 -8.97465 -8.79427 -7.76197 -5.15544 0.54227 0.66728 1.47590 1.51475 1.56521 2.35576 2.51498 2.59200 2.62941 2.96623 3.34600 3.97228 4.02553 4.04250 4.15618 4.26493 4.36626 4.40794 4.45736 4.53375 4.65290 4.76451 4.80932 4.88239 4.96823 5.02560 5.12856 5.16819 5.32467 5.40350 5.57429 5.64470 5.67637 5.79662 5.89055 6.09145 6.34698 6.66798 7.16181 7.37427 7.89545 8.36256 9.25783 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.008812 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.775173 B = 3176.793649 C = 4282.487533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.130 4.130 3 C 0.277 3.723 4 N -0.587 5.587 5 C -0.262 4.262 6 H 0.091 0.909 7 C -0.052 4.052 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.283 1.283 11 H -0.302 1.302 12 H -0.276 1.276 13 C 0.194 3.806 14 C -0.142 4.142 15 C -0.048 4.048 16 C -0.112 4.112 17 C -0.167 4.167 18 C -0.086 4.086 19 C -0.221 4.221 20 C 0.120 3.880 21 O -0.336 6.336 22 C 0.021 3.979 23 H 0.222 0.778 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.243 0.757 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.935 -4.496 -11.882 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.132 4.132 3 C 0.151 3.849 4 N -0.306 5.306 5 C -0.391 4.391 6 H 0.108 0.892 7 C -0.247 4.247 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.209 1.209 11 H -0.228 1.228 12 H -0.201 1.201 13 C 0.069 3.931 14 C -0.145 4.145 15 C -0.048 4.048 16 C -0.168 4.168 17 C -0.185 4.185 18 C -0.104 4.104 19 C -0.240 4.240 20 C 0.074 3.926 21 O -0.249 6.249 22 C -0.073 4.073 23 H 0.239 0.761 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.671 -4.377 -11.706 15.211 hybrid contribution -0.133 0.590 1.002 1.170 sum 8.538 -3.787 -10.704 14.206 Atomic orbital electron populations 1.24978 0.96325 1.03199 1.07167 1.24743 0.96192 0.97671 0.94642 1.17583 0.82778 0.88700 0.95828 1.44139 1.74509 1.06327 1.05628 1.19762 1.24659 1.10889 0.83804 0.89163 1.25537 0.97254 1.01502 1.00422 1.70328 1.21492 1.28158 1.36148 0.85578 0.78618 0.77300 0.80482 1.20923 1.22844 1.20133 1.19556 0.91261 0.90581 0.91714 1.20050 0.99006 1.00989 0.94489 1.19784 0.92860 0.96193 0.95993 1.20910 1.02455 0.99477 0.93971 1.21172 0.96237 1.03486 0.97592 1.21179 0.99199 0.95183 0.94823 1.21404 0.92224 1.06712 1.03646 1.19026 0.87788 0.93066 0.92674 1.86116 1.35289 1.64077 1.39467 1.23253 1.03757 0.96418 0.83892 0.76083 0.92409 0.92402 0.94741 0.94374 0.92638 0.91672 0.92109 0.89609 0.84117 0.83074 0.83603 0.91273 0.87339 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.15 19.25 74.32 1.43 -12.72 16 2 C -0.13 -6.72 11.58 31.12 0.36 -6.36 16 3 C 0.28 14.19 5.41 84.57 0.46 14.65 16 4 N -0.59 -29.81 2.47 -716.92 -1.77 -31.58 16 5 C -0.26 -14.10 9.52 84.03 0.80 -13.30 16 6 H 0.09 4.59 4.99 -2.91 -0.01 4.58 16 7 C -0.05 -2.88 4.80 84.86 0.41 -2.47 16 8 N -0.92 -54.27 9.64 21.65 0.21 -54.06 16 9 Si 0.95 45.26 29.62 68.60 2.03 47.29 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.19 8.55 5.18 85.63 0.44 8.99 16 14 C -0.14 -5.46 5.48 -19.77 -0.11 -5.57 16 15 C -0.05 -1.62 5.88 -19.88 -0.12 -1.74 16 16 C -0.11 -3.58 8.42 71.24 0.60 -2.98 16 17 C -0.17 -4.65 9.70 22.28 0.22 -4.43 16 18 C -0.09 -2.15 10.04 22.25 0.22 -1.93 16 19 C -0.22 -6.09 9.04 22.37 0.20 -5.89 16 20 C 0.12 4.15 6.66 22.51 0.15 4.30 16 21 O -0.34 -11.36 8.03 -92.40 -0.74 -12.10 16 22 C 0.02 0.47 9.81 113.37 1.11 1.58 16 23 H 0.22 8.52 7.80 -4.42 -0.03 8.49 16 24 H 0.06 3.28 6.50 -2.39 -0.02 3.26 16 25 H 0.06 2.75 6.55 -2.38 -0.02 2.73 16 26 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.04 1.72 7.46 -2.38 -0.02 1.70 16 28 H 0.06 2.41 5.84 -2.39 -0.01 2.40 16 29 H 0.06 2.31 6.58 -2.38 -0.02 2.30 16 30 H 0.06 2.07 5.93 -2.39 -0.01 2.06 16 31 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 32 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.15 3.09 6.30 -2.91 -0.02 3.08 16 35 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 36 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.21 7.65 -2.39 -0.02 1.19 16 Total: -1.00 -67.26 305.77 6.97 -60.29 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.07 Total: 18.04 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 6.18 Total: -27.87 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -1.57 Total: -85.64 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.74 Total: -12.10 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.26 6.97 -60.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262376282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.103 kcal (2) G-P(sol) polarization free energy of solvation -67.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds