Wall clock time and date at job start Sun Mar 29 2020 23:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34430 * 126.82426 * 2 1 4 4 N 1.30828 * 108.07446 * 179.97438 * 3 2 1 5 5 C 1.33243 * 109.83187 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.52630 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46992 * 90.02289 * 6 5 4 8 8 C 1.38829 * 119.99919 * 179.97438 * 7 6 5 9 9 C 1.39794 * 119.58186 * 0.02562 * 8 7 6 10 10 C 1.38599 * 119.48706 * 179.97438 * 9 8 7 11 11 C 1.38390 * 118.68493 * 0.02562 * 10 9 8 12 12 C 1.40559 * 119.14366 * 359.97438 * 11 10 9 13 13 C 1.41312 * 119.78086 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.40031 * 120.00193 * 179.97438 * 13 12 11 16 16 N 1.30743 * 119.99631 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00128 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47211 * 59.99950 * 17 15 13 19 19 H 1.48500 * 109.47069 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47104 * 299.99659 * 17 15 13 21 21 N 1.31957 * 119.58518 * 179.72852 * 8 7 6 22 22 N 1.30709 * 108.94612 * 0.26328 * 5 4 3 23 23 H 1.09002 * 109.47069 * 90.00382 * 1 2 3 24 24 H 1.08997 * 109.47648 * 210.00845 * 1 2 3 25 25 H 1.09006 * 109.46799 * 330.01147 * 1 2 3 26 26 H 1.07997 * 125.96213 * 359.96382 * 3 2 1 27 27 H 1.09002 * 109.47060 * 210.02501 * 6 5 4 28 28 H 1.09001 * 109.47380 * 330.02589 * 6 5 4 29 29 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 30 30 H 1.07993 * 120.25989 * 359.96046 * 9 8 7 31 31 H 1.07997 * 120.65868 * 180.02562 * 10 9 8 32 32 H 1.07995 * 120.42739 * 179.97438 * 11 10 9 33 33 H 0.97003 * 119.99546 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6556 0.0006 5 6 3.5347 -0.6766 0.0015 6 6 4.7775 -1.5290 0.0029 7 7 5.1790 -1.8047 1.3846 8 6 6.3041 -2.5771 1.6395 9 6 7.0478 -3.0868 0.5712 10 6 8.1710 -3.8572 0.8280 11 6 8.5233 -4.0999 2.1441 12 6 7.7349 -3.5594 3.1746 13 6 8.0820 -3.7992 4.5233 14 1 8.9504 -4.3963 4.7595 15 6 7.3001 -3.2625 5.5536 16 7 6.2486 -2.5400 5.2677 17 14 7.7594 -3.5789 7.3364 18 1 9.1184 -3.0416 7.6003 19 1 6.7800 -2.9057 8.2268 20 1 7.7452 -5.0403 7.5994 21 7 6.6614 -2.8158 2.8872 22 7 2.3067 -1.1243 -0.0042 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8902 0.5137 26 1 1.9511 2.1077 -0.0006 27 1 4.5743 -2.4686 -0.5108 28 1 5.5811 -1.0008 -0.5104 29 1 4.6583 -1.4483 2.1213 30 1 6.7494 -2.8822 -0.4463 31 1 8.7595 -4.2602 0.0171 32 1 9.3928 -4.6968 2.3764 33 1 5.7072 -2.1680 5.9814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320363307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:30 Heat of formation + Delta-G solvation = 137.526269 kcal Electronic energy + Delta-G solvation = -18058.908932 eV Core-core repulsion = 15122.000255 eV Total energy + Delta-G solvation = -2936.908677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10926 -38.18482 -35.45126 -33.95822 -33.10025 -31.37420 -30.34666 -29.32202 -27.56626 -25.42971 -25.20750 -22.14481 -21.53241 -20.76376 -20.07177 -17.35025 -17.13679 -16.28137 -15.97589 -15.24662 -14.85021 -14.69295 -14.15905 -13.70945 -13.44276 -13.30986 -13.13592 -12.94729 -12.39748 -11.91897 -11.84735 -11.69729 -11.12132 -10.95284 -10.57742 -10.40666 -10.03015 -9.92138 -9.85363 -9.59787 -9.43679 -8.83755 -7.84533 -7.44083 -6.46409 -6.25861 -4.40948 1.52645 2.21082 2.80260 2.94894 3.14399 3.17243 3.30771 3.36300 4.03516 4.04848 4.30425 4.48535 4.72216 4.82741 4.90533 5.06136 5.13549 5.81757 5.90816 6.15639 6.19019 6.21729 6.36181 6.63455 6.69847 6.91504 6.95353 6.99111 7.31166 7.65276 7.87020 7.97680 8.07279 8.21786 8.40778 8.72249 8.86559 9.17765 10.31279 10.47185 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.004814 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.290400 B = 5815.490549 C = 6801.519566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.388 5.388 3 C 0.249 3.751 4 N -0.530 5.530 5 C 0.221 3.779 6 C 0.238 3.762 7 N -0.731 5.731 8 C 0.415 3.585 9 C -0.367 4.367 10 C -0.031 4.031 11 C -0.316 4.316 12 C 0.294 3.706 13 C -0.436 4.436 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.716 5.716 17 Si 0.905 3.095 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 N -0.530 5.530 22 N -0.301 5.301 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.219 0.781 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.397 0.603 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.426 6.810 -7.729 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.180 5.180 3 C -0.048 4.048 4 N -0.257 5.257 5 C -0.062 4.062 6 C 0.110 3.890 7 N -0.370 5.370 8 C 0.175 3.825 9 C -0.393 4.393 10 C -0.055 4.055 11 C -0.339 4.339 12 C 0.167 3.833 13 C -0.468 4.468 14 H 0.101 0.899 15 C -0.153 4.153 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 N -0.252 5.252 22 N -0.129 5.129 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.235 0.765 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.231 0.769 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.070 6.710 -7.165 15.558 hybrid contribution 0.046 0.022 0.326 0.330 sum -12.023 6.733 -6.839 15.384 Atomic orbital electron populations 1.21929 0.73843 1.04999 1.03673 1.50451 1.08097 1.04551 1.54866 1.26064 0.85862 0.95488 0.97391 1.70454 1.20382 1.11167 1.23667 1.24353 0.93679 0.89760 0.98416 1.19166 0.88104 0.95471 0.86276 1.43916 1.29870 1.58588 1.04592 1.18414 0.85411 0.87797 0.90832 1.20605 1.04752 1.17413 0.96504 1.20585 0.94518 0.94860 0.95541 1.21534 1.05632 1.13520 0.93237 1.18179 0.86053 0.86239 0.92870 1.19545 1.10019 1.27788 0.89419 0.89919 1.26050 0.94314 0.93936 1.01047 1.70154 1.10087 1.20135 1.33418 0.86444 0.79278 0.79535 0.81812 1.19001 1.20430 1.19024 1.68176 1.19427 1.22276 1.15310 1.78118 1.01698 1.07639 1.25491 0.90315 0.88969 0.88947 0.76468 0.90684 0.90142 0.76861 0.89051 0.88852 0.88696 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.53 59.85 0.69 1.28 16 2 N -0.39 -4.51 4.04 -69.44 -0.28 -4.79 16 3 C 0.25 2.79 12.66 -90.66 -1.15 1.65 16 4 N -0.53 -8.34 11.19 -11.98 -0.13 -8.47 16 5 C 0.22 3.74 7.51 -156.85 -1.18 2.56 16 6 C 0.24 4.28 5.51 -5.19 -0.03 4.25 16 7 N -0.73 -16.09 5.71 -61.57 -0.35 -16.44 16 8 C 0.42 10.63 7.65 -155.32 -1.19 9.44 16 9 C -0.37 -8.72 9.34 -38.87 -0.36 -9.08 16 10 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 11 C -0.32 -8.21 9.83 -38.65 -0.38 -8.59 16 12 C 0.29 8.42 6.55 -85.00 -0.56 7.87 16 13 C -0.44 -12.13 9.14 -37.74 -0.34 -12.47 16 14 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 15 C 0.07 1.89 5.50 -17.34 -0.10 1.79 16 16 N -0.72 -19.75 11.46 55.55 0.64 -19.12 16 17 Si 0.90 19.24 29.56 -169.99 -5.02 14.21 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 N -0.53 -15.24 7.89 -10.33 -0.08 -15.32 16 22 N -0.30 -4.83 12.70 32.42 0.41 -4.42 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.22 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.08 1.30 7.92 -51.93 -0.41 0.88 16 28 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 29 H 0.40 9.08 8.58 -40.82 -0.35 8.73 16 30 H 0.09 1.91 6.68 -52.49 -0.35 1.56 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.27 6.78 8.29 -40.82 -0.34 6.44 16 LS Contribution 295.06 15.07 4.45 4.45 Total: -1.00 -34.62 295.06 -8.98 -43.59 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.61 Total: 8.75 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.99 Total: -2.44 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: 0.20 Total: -68.56 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.62 -8.98 -43.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.119 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds