Wall clock time and date at job start Sun Mar 29 2020 23:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34430 * 126.82426 * 2 1 4 4 N 1.30828 * 108.07446 * 179.97438 * 3 2 1 5 5 C 1.33243 * 109.83187 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.52630 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46992 * 90.02289 * 6 5 4 8 8 C 1.38829 * 119.99919 * 179.97438 * 7 6 5 9 9 C 1.39794 * 119.58186 * 0.02562 * 8 7 6 10 10 C 1.38599 * 119.48706 * 179.97438 * 9 8 7 11 11 C 1.38390 * 118.68493 * 0.02562 * 10 9 8 12 12 C 1.40559 * 119.14366 * 359.97438 * 11 10 9 13 13 C 1.41312 * 119.78086 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.40031 * 120.00193 * 179.97438 * 13 12 11 16 16 N 1.30743 * 119.99631 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00128 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47211 * 59.99950 * 17 15 13 19 19 H 1.48500 * 109.47069 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47104 * 299.99659 * 17 15 13 21 21 N 1.31957 * 119.58518 * 179.72852 * 8 7 6 22 22 N 1.30709 * 108.94612 * 0.26328 * 5 4 3 23 23 H 1.09002 * 109.47069 * 90.00382 * 1 2 3 24 24 H 1.08997 * 109.47648 * 210.00845 * 1 2 3 25 25 H 1.09006 * 109.46799 * 330.01147 * 1 2 3 26 26 H 1.07997 * 125.96213 * 359.96382 * 3 2 1 27 27 H 1.09002 * 109.47060 * 210.02501 * 6 5 4 28 28 H 1.09001 * 109.47380 * 330.02589 * 6 5 4 29 29 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 30 30 H 1.07993 * 120.25989 * 359.96046 * 9 8 7 31 31 H 1.07997 * 120.65868 * 180.02562 * 10 9 8 32 32 H 1.07995 * 120.42739 * 179.97438 * 11 10 9 33 33 H 0.97003 * 119.99546 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6556 0.0006 5 6 3.5347 -0.6766 0.0015 6 6 4.7775 -1.5290 0.0029 7 7 5.1790 -1.8047 1.3846 8 6 6.3041 -2.5771 1.6395 9 6 7.0478 -3.0868 0.5712 10 6 8.1710 -3.8572 0.8280 11 6 8.5233 -4.0999 2.1441 12 6 7.7349 -3.5594 3.1746 13 6 8.0820 -3.7992 4.5233 14 1 8.9504 -4.3963 4.7595 15 6 7.3001 -3.2625 5.5536 16 7 6.2486 -2.5400 5.2677 17 14 7.7594 -3.5789 7.3364 18 1 9.1184 -3.0416 7.6003 19 1 6.7800 -2.9057 8.2268 20 1 7.7452 -5.0403 7.5994 21 7 6.6614 -2.8158 2.8872 22 7 2.3067 -1.1243 -0.0042 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8902 0.5137 26 1 1.9511 2.1077 -0.0006 27 1 4.5743 -2.4686 -0.5108 28 1 5.5811 -1.0008 -0.5104 29 1 4.6583 -1.4483 2.1213 30 1 6.7494 -2.8822 -0.4463 31 1 8.7595 -4.2602 0.0171 32 1 9.3928 -4.6968 2.3764 33 1 5.7072 -2.1680 5.9814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320363307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:29 Heat of formation + Delta-G solvation = 114.820230 kcal Electronic energy + Delta-G solvation = -18059.893540 eV Core-core repulsion = 15122.000255 eV Total energy + Delta-G solvation = -2937.893285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.13180 -40.10965 -37.03316 -35.35991 -34.67724 -32.61942 -32.20589 -31.02047 -28.74210 -27.26516 -26.57318 -23.42604 -23.03808 -22.45856 -21.52033 -19.27108 -18.38393 -17.68386 -17.05162 -16.64638 -16.41935 -16.24454 -15.91966 -15.12101 -14.97549 -14.82062 -14.23040 -13.95557 -13.85099 -13.68128 -13.43841 -12.82404 -12.73172 -12.72079 -12.57254 -12.22091 -11.76139 -11.32081 -11.10434 -10.91841 -10.69540 -10.58513 -9.83656 -9.44247 -8.34693 -8.21698 -6.47164 0.51865 1.07730 1.35961 1.41260 1.41424 1.53865 1.60203 1.67521 2.25786 2.77224 2.93547 3.10888 3.47956 3.95442 4.05529 4.28130 4.37061 4.43106 4.45144 4.68731 4.72645 4.79146 4.98598 5.02463 5.08624 5.16800 5.24655 5.35725 5.71746 5.91348 5.97560 6.05691 6.21826 6.50945 6.78395 6.89838 7.03308 7.18432 8.34176 8.52236 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.004814 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.290400 B = 5815.490549 C = 6801.519566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.383 5.383 3 C 0.262 3.738 4 N -0.571 5.571 5 C 0.203 3.797 6 C 0.241 3.759 7 N -0.728 5.728 8 C 0.396 3.604 9 C -0.365 4.365 10 C -0.027 4.027 11 C -0.340 4.340 12 C 0.259 3.741 13 C -0.473 4.473 14 H 0.089 0.911 15 C 0.025 3.975 16 N -0.756 5.756 17 Si 0.988 3.012 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.258 1.258 21 N -0.566 5.566 22 N -0.333 5.333 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.273 0.727 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.388 0.612 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 7.743 -8.144 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.174 5.174 3 C -0.033 4.033 4 N -0.299 5.299 5 C -0.080 4.080 6 C 0.114 3.886 7 N -0.364 5.364 8 C 0.156 3.844 9 C -0.391 4.391 10 C -0.051 4.051 11 C -0.363 4.363 12 C 0.132 3.868 13 C -0.505 4.505 14 H 0.107 0.893 15 C -0.196 4.196 16 N -0.378 5.378 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.182 1.182 21 N -0.289 5.289 22 N -0.164 5.164 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.289 0.711 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.221 0.779 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.199 7.654 -7.632 17.060 hybrid contribution 0.222 -0.185 0.294 0.413 sum -12.977 7.469 -7.338 16.674 Atomic orbital electron populations 1.22412 0.70626 1.06651 1.05566 1.50756 1.09702 1.03467 1.53444 1.27032 0.84474 0.97221 0.94602 1.70377 1.23237 1.10711 1.25567 1.24000 0.93433 0.90358 1.00166 1.19181 0.89260 0.96185 0.83951 1.44047 1.28655 1.57561 1.06094 1.18853 0.86515 0.88276 0.90761 1.20973 1.04244 1.16351 0.97493 1.21023 0.94468 0.93838 0.95809 1.21720 1.06197 1.14482 0.93937 1.18683 0.86869 0.87055 0.94206 1.19944 1.11119 1.29186 0.90236 0.89278 1.27006 0.93761 0.93061 1.05817 1.70275 1.11253 1.21133 1.35179 0.85200 0.79173 0.79638 0.75237 1.18228 1.19472 1.18245 1.68136 1.20219 1.23392 1.17125 1.77980 1.01980 1.10278 1.26131 0.88264 0.89628 0.85017 0.71124 0.90177 0.89733 0.77857 0.86030 0.84850 0.87643 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.53 127.77 1.47 2.27 16 2 N -0.38 -8.07 4.04 -373.61 -1.51 -9.58 16 3 C 0.26 5.20 12.66 180.36 2.28 7.48 16 4 N -0.57 -17.43 11.19 -191.81 -2.15 -19.57 16 5 C 0.20 6.86 7.51 138.63 1.04 7.90 16 6 C 0.24 8.73 5.51 85.63 0.47 9.20 16 7 N -0.73 -32.80 5.71 -348.71 -1.99 -34.79 16 8 C 0.40 20.69 7.65 133.41 1.02 21.71 16 9 C -0.36 -17.14 9.34 22.73 0.21 -16.93 16 10 C -0.03 -1.27 10.15 22.39 0.23 -1.04 16 11 C -0.34 -17.89 9.83 22.87 0.22 -17.66 16 12 C 0.26 15.34 6.55 40.18 0.26 15.60 16 13 C -0.47 -27.14 9.14 23.46 0.21 -26.92 16 14 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 15 C 0.02 1.34 5.50 85.29 0.47 1.80 16 16 N -0.76 -43.00 11.46 21.84 0.25 -42.75 16 17 Si 0.99 39.96 29.56 68.60 2.03 41.99 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 N -0.57 -33.66 7.89 -186.59 -1.47 -35.13 16 22 N -0.33 -10.55 12.70 -51.33 -0.65 -11.20 16 23 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 26 H 0.27 1.83 8.06 -2.91 -0.02 1.80 16 27 H 0.08 2.77 7.92 -2.39 -0.02 2.75 16 28 H 0.08 2.95 7.92 -2.39 -0.02 2.93 16 29 H 0.39 18.51 8.58 -92.71 -0.80 17.72 16 30 H 0.12 4.87 6.68 -2.91 -0.02 4.85 16 31 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 33 H 0.27 14.20 8.29 -92.71 -0.77 13.43 16 Total: -1.00 -78.82 295.06 2.76 -76.06 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.35 Total: 31.57 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 7.90 Total: 3.41 kcal Atomic # 7 Polarization: -145.51 SS G_CDS: -7.52 Total: -153.03 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -78.82 2.76 -76.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.882 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds