Wall clock time and date at job start Sun Mar 29 2020 23:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37093 * 119.99780 * 2 1 4 4 H 1.07999 * 120.00009 * 203.52594 * 3 2 1 5 5 C 1.38956 * 120.00276 * 23.52270 * 3 2 1 6 6 N 1.31407 * 119.99640 * 10.67620 * 5 3 2 7 7 Si 1.86795 * 120.00051 * 190.67784 * 5 3 2 8 8 H 1.48499 * 109.47453 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47338 * 120.00060 * 7 5 3 10 10 H 1.48504 * 109.47042 * 240.00179 * 7 5 3 11 11 C 1.34776 * 119.99979 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99439 * 180.02562 * 11 2 1 13 13 C 1.50694 * 120.00260 * 359.97438 * 11 2 1 14 14 H 1.09006 * 109.61676 * 60.36495 * 13 11 2 15 15 C 1.53306 * 109.62112 * 300.00411 * 13 11 2 16 16 C 1.52868 * 108.59181 * 165.64771 * 15 13 11 17 17 C 1.52071 * 110.51689 * 54.88429 * 16 15 13 18 18 H 1.09004 * 114.26392 * 193.76460 * 17 16 15 19 19 C 1.52067 * 120.02050 * 338.30471 * 17 16 15 20 20 H 1.08997 * 117.24944 * 216.66246 * 19 17 16 21 21 C 1.50931 * 110.04616 * 180.84862 * 13 11 2 22 22 C 1.52302 * 119.83531 * 49.55687 * 17 16 15 23 23 F 1.39898 * 117.53860 * 142.80257 * 22 17 16 24 24 F 1.39905 * 117.54053 * 357.55039 * 22 17 16 25 25 H 1.08998 * 109.47463 * 273.65041 * 1 2 3 26 26 H 1.08997 * 109.47342 * 33.65127 * 1 2 3 27 27 H 1.09004 * 109.47090 * 153.65370 * 1 2 3 28 28 H 0.97003 * 119.99970 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.61352 * 45.91377 * 15 13 11 30 30 H 1.09000 * 109.61336 * 285.37553 * 15 13 11 31 31 H 1.09007 * 109.26473 * 294.61687 * 16 15 13 32 32 H 1.09000 * 109.23884 * 175.14181 * 16 15 13 33 33 H 1.08998 * 108.51834 * 54.00496 * 21 13 11 34 34 H 1.08993 * 109.12820 * 295.05627 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1631 1.2262 -0.3733 5 6 1.5422 2.3407 0.4803 6 7 0.3993 2.2615 1.1239 7 14 2.3494 4.0036 0.2110 8 1 3.6204 3.8220 -0.5351 9 1 1.4365 4.8762 -0.5703 10 1 2.6332 4.6347 1.5250 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 1 0.7624 -2.5352 -0.8928 15 6 0.5032 -2.5574 1.2503 16 6 -0.5038 -3.6917 1.0602 17 6 0.2137 -4.9923 0.7344 18 1 -0.4376 -5.7808 0.3570 19 6 1.6217 -4.9614 0.1610 20 1 1.8731 -5.7145 -0.5858 21 6 2.3546 -3.6291 0.0198 22 6 1.3818 -5.4502 1.5978 23 9 1.5058 -6.8218 1.8436 24 9 1.7826 -4.6100 2.6422 25 1 -0.3634 0.0654 1.0255 26 1 -0.3634 0.8554 -0.5694 27 1 -0.3633 -0.9210 -0.4561 28 1 -0.0255 3.0667 1.4588 29 1 -0.0281 -1.6156 1.3881 30 1 1.1239 -2.7615 2.1227 31 1 -1.1798 -3.4393 0.2432 32 1 -1.0795 -3.8183 1.9771 33 1 3.0321 -3.4984 0.8636 34 1 2.9298 -3.6295 -0.9059 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328183741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:13 Heat of formation + Delta-G solvation = -100.350934 kcal Electronic energy + Delta-G solvation = -20307.908671 eV Core-core repulsion = 16877.702927 eV Total energy + Delta-G solvation = -3430.205744 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.57739 -47.24508 -39.65840 -37.63173 -34.73073 -32.87531 -31.30900 -30.74461 -26.46860 -25.18233 -23.96734 -22.80589 -21.36769 -19.50439 -18.38310 -17.73284 -16.89799 -16.51819 -15.91107 -15.69198 -14.97366 -14.47034 -14.21667 -13.99076 -13.81131 -13.58159 -13.35536 -13.16311 -12.90132 -12.55673 -12.26816 -11.91864 -11.57636 -11.37874 -11.23064 -10.98311 -10.90842 -10.57154 -10.35977 -10.24139 -10.18174 -9.82707 -9.46181 -9.00451 -8.30694 -7.65271 -6.29608 -3.87174 3.10255 3.13527 3.15823 3.26228 3.33121 3.89165 4.13604 4.26914 4.33380 4.69906 4.79043 5.02490 5.09599 5.27450 5.35770 5.42454 5.55757 5.60096 5.78052 5.86046 5.92904 6.03102 6.19606 6.34135 6.37006 6.41612 6.61821 6.71689 6.88252 7.24216 7.58123 8.15875 8.50566 9.20953 9.44809 10.00861 10.74053 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.042928 B = 0.005439 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.102442 B = 5146.714756 C = 5361.390298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.304 4.304 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.453 3.547 12 O -0.590 6.590 13 C -0.093 4.093 14 H 0.083 0.917 15 C -0.141 4.141 16 C -0.088 4.088 17 C -0.136 4.136 18 H 0.122 0.878 19 C -0.132 4.132 20 H 0.127 0.873 21 C -0.075 4.075 22 C 0.182 3.818 23 F -0.169 7.169 24 F -0.151 7.151 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.266 0.734 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 -12.122 -1.522 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.165 5.165 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.241 3.759 12 O -0.475 6.475 13 C -0.114 4.114 14 H 0.101 0.899 15 C -0.179 4.179 16 C -0.125 4.125 17 C -0.155 4.155 18 H 0.140 0.860 19 C -0.151 4.151 20 H 0.145 0.855 21 C -0.112 4.112 22 C 0.146 3.854 23 F -0.149 7.149 24 F -0.132 7.132 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.659 -11.970 -1.391 12.920 hybrid contribution 0.189 0.673 0.201 0.727 sum -4.469 -11.297 -1.190 12.207 Atomic orbital electron populations 1.21619 0.81395 0.98430 1.01729 1.43536 1.05418 1.04725 1.62791 1.19696 1.00010 0.84102 1.39448 0.88454 1.25335 0.96519 1.00052 0.95380 1.69983 1.17610 1.29262 1.35635 0.85868 0.79261 0.81496 0.78119 1.19275 1.20723 1.20765 1.19929 0.87860 0.84669 0.83452 1.90510 1.14052 1.87136 1.55815 1.20734 0.97354 0.94087 0.99251 0.89879 1.22126 0.97868 0.99683 0.98188 1.20909 0.97846 0.91372 1.02401 1.23250 0.92095 1.01353 0.98810 0.86050 1.23733 0.97630 1.01065 0.92715 0.85527 1.20464 0.97280 0.88977 1.04504 1.20250 1.06935 0.73007 0.85228 1.92988 1.96704 1.29799 1.95418 1.92975 1.91630 1.69003 1.59574 0.91821 0.91837 0.95237 0.92369 0.88874 0.90346 0.90062 0.90668 0.89874 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 7.04 59.85 0.42 2.84 16 2 N -0.45 -11.28 3.02 -122.20 -0.37 -11.65 16 3 C -0.30 -8.48 9.27 -14.93 -0.14 -8.62 16 4 H 0.10 2.86 7.42 -52.49 -0.39 2.47 16 5 C 0.03 0.79 5.14 -17.47 -0.09 0.70 16 6 N -0.89 -23.40 10.62 55.50 0.59 -22.81 16 7 Si 0.93 20.80 29.57 -169.99 -5.03 15.77 16 8 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 C 0.45 10.88 7.03 -10.99 -0.08 10.81 16 12 O -0.59 -16.32 15.63 5.54 0.09 -16.23 16 13 C -0.09 -1.65 1.64 -92.66 -0.15 -1.80 16 14 H 0.08 1.33 7.34 -51.93 -0.38 0.95 16 15 C -0.14 -2.29 4.51 -26.64 -0.12 -2.41 16 16 C -0.09 -1.07 5.83 -27.27 -0.16 -1.22 16 17 C -0.14 -1.57 5.99 -91.92 -0.55 -2.12 16 18 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 19 C -0.13 -1.67 6.23 -90.91 -0.57 -2.24 16 20 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 21 C -0.07 -1.21 4.19 -27.92 -0.12 -1.33 16 22 C 0.18 2.52 5.10 -26.75 -0.14 2.38 16 23 F -0.17 -2.33 17.60 2.25 0.04 -2.29 16 24 F -0.15 -2.47 14.03 2.25 0.03 -2.44 16 25 H 0.06 1.43 6.28 -51.93 -0.33 1.10 16 26 H 0.06 1.45 7.22 -51.93 -0.37 1.08 16 27 H 0.03 0.52 5.88 -51.93 -0.31 0.21 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.09 1.63 4.59 -51.93 -0.24 1.39 16 30 H 0.08 1.40 5.71 -51.93 -0.30 1.10 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.55 7.29 -51.93 -0.38 1.17 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 274.52 15.07 4.14 4.14 Total: -1.00 -30.70 274.52 -6.13 -36.83 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.94 Total: 1.70 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.68 Total: -3.02 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.22 Total: -34.46 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.70 -6.13 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328183741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.517 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds