Wall clock time and date at job start Sun Mar 29 2020 23:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37093 * 119.99780 * 2 1 4 4 H 1.07999 * 120.00009 * 203.52594 * 3 2 1 5 5 C 1.38956 * 120.00276 * 23.52270 * 3 2 1 6 6 N 1.31407 * 119.99640 * 10.67620 * 5 3 2 7 7 Si 1.86795 * 120.00051 * 190.67784 * 5 3 2 8 8 H 1.48499 * 109.47453 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47338 * 120.00060 * 7 5 3 10 10 H 1.48504 * 109.47042 * 240.00179 * 7 5 3 11 11 C 1.34776 * 119.99979 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99439 * 180.02562 * 11 2 1 13 13 C 1.50694 * 120.00260 * 359.97438 * 11 2 1 14 14 H 1.09006 * 109.61676 * 60.36495 * 13 11 2 15 15 C 1.53306 * 109.62112 * 300.00411 * 13 11 2 16 16 C 1.52868 * 108.59181 * 165.64771 * 15 13 11 17 17 C 1.52071 * 110.51689 * 54.88429 * 16 15 13 18 18 H 1.09004 * 114.26392 * 193.76460 * 17 16 15 19 19 C 1.52067 * 120.02050 * 338.30471 * 17 16 15 20 20 H 1.08997 * 117.24944 * 216.66246 * 19 17 16 21 21 C 1.50931 * 110.04616 * 180.84862 * 13 11 2 22 22 C 1.52302 * 119.83531 * 49.55687 * 17 16 15 23 23 F 1.39898 * 117.53860 * 142.80257 * 22 17 16 24 24 F 1.39905 * 117.54053 * 357.55039 * 22 17 16 25 25 H 1.08998 * 109.47463 * 273.65041 * 1 2 3 26 26 H 1.08997 * 109.47342 * 33.65127 * 1 2 3 27 27 H 1.09004 * 109.47090 * 153.65370 * 1 2 3 28 28 H 0.97003 * 119.99970 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.61352 * 45.91377 * 15 13 11 30 30 H 1.09000 * 109.61336 * 285.37553 * 15 13 11 31 31 H 1.09007 * 109.26473 * 294.61687 * 16 15 13 32 32 H 1.09000 * 109.23884 * 175.14181 * 16 15 13 33 33 H 1.08998 * 108.51834 * 54.00496 * 21 13 11 34 34 H 1.08993 * 109.12820 * 295.05627 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1631 1.2262 -0.3733 5 6 1.5422 2.3407 0.4803 6 7 0.3993 2.2615 1.1239 7 14 2.3494 4.0036 0.2110 8 1 3.6204 3.8220 -0.5351 9 1 1.4365 4.8762 -0.5703 10 1 2.6332 4.6347 1.5250 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 1 0.7624 -2.5352 -0.8928 15 6 0.5032 -2.5574 1.2503 16 6 -0.5038 -3.6917 1.0602 17 6 0.2137 -4.9923 0.7344 18 1 -0.4376 -5.7808 0.3570 19 6 1.6217 -4.9614 0.1610 20 1 1.8731 -5.7145 -0.5858 21 6 2.3546 -3.6291 0.0198 22 6 1.3818 -5.4502 1.5978 23 9 1.5058 -6.8218 1.8436 24 9 1.7826 -4.6100 2.6422 25 1 -0.3634 0.0654 1.0255 26 1 -0.3634 0.8554 -0.5694 27 1 -0.3633 -0.9210 -0.4561 28 1 -0.0255 3.0667 1.4588 29 1 -0.0281 -1.6156 1.3881 30 1 1.1239 -2.7615 2.1227 31 1 -1.1798 -3.4393 0.2432 32 1 -1.0795 -3.8183 1.9771 33 1 3.0321 -3.4984 0.8636 34 1 2.9298 -3.6295 -0.9059 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328183741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:12 Heat of formation + Delta-G solvation = -118.921398 kcal Electronic energy + Delta-G solvation = -20308.713946 eV Core-core repulsion = 16877.702927 eV Total energy + Delta-G solvation = -3431.011020 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.65274 -48.33514 -41.17464 -39.12145 -36.71153 -34.35895 -33.15878 -31.91691 -28.32625 -26.89842 -25.37325 -24.18499 -22.43792 -20.98236 -19.79519 -18.93473 -18.76721 -17.99778 -17.20402 -16.95921 -16.63531 -16.13138 -15.79227 -15.51246 -15.07747 -14.83252 -14.56815 -14.42300 -14.31965 -13.91492 -13.55354 -13.49488 -13.24909 -13.04548 -12.94108 -12.63677 -12.35207 -12.19050 -12.12542 -11.82068 -11.54200 -11.03403 -10.95206 -10.50296 -10.21848 -9.65543 -8.31903 -5.98387 1.35403 1.40344 1.53890 2.03534 2.09430 2.16413 2.28575 3.01552 3.10792 3.30350 3.40228 3.66964 3.85523 4.00394 4.01926 4.22583 4.35995 4.44206 4.50805 4.67919 4.78182 4.84197 4.92435 5.05273 5.10434 5.13559 5.18054 5.28203 5.41967 5.45415 5.52053 6.11658 6.50553 7.18529 7.50038 8.05959 8.69451 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.042928 B = 0.005439 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.102442 B = 5146.714756 C = 5361.390298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.462 5.462 3 C -0.345 4.345 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.896 5.896 7 Si 0.988 3.012 8 H -0.276 1.276 9 H -0.263 1.263 10 H -0.277 1.277 11 C 0.439 3.561 12 O -0.639 6.639 13 C -0.082 4.082 14 H 0.114 0.886 15 C -0.139 4.139 16 C -0.084 4.084 17 C -0.108 4.108 18 H 0.164 0.836 19 C -0.126 4.126 20 H 0.160 0.840 21 C -0.071 4.071 22 C 0.155 3.845 23 F -0.170 7.170 24 F -0.175 7.175 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.273 0.727 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 -13.266 -2.432 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.180 5.180 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.811 3.189 8 H -0.201 1.201 9 H -0.188 1.188 10 H -0.203 1.203 11 C 0.229 3.771 12 O -0.528 6.528 13 C -0.103 4.103 14 H 0.132 0.868 15 C -0.176 4.176 16 C -0.121 4.121 17 C -0.127 4.127 18 H 0.182 0.818 19 C -0.145 4.145 20 H 0.177 0.823 21 C -0.109 4.109 22 C 0.118 3.882 23 F -0.151 7.151 24 F -0.156 7.156 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.999 -13.122 -2.294 15.048 hybrid contribution 0.957 1.045 0.531 1.513 sum -6.042 -12.077 -1.763 13.619 Atomic orbital electron populations 1.21587 0.79233 0.99926 1.01221 1.43813 1.06870 1.04502 1.62794 1.19624 0.99721 0.86266 1.41694 0.91500 1.26050 0.97036 1.02732 0.94512 1.70049 1.17977 1.30424 1.35045 0.84963 0.78297 0.77447 0.78146 1.20068 1.18812 1.20257 1.21121 0.87796 0.86494 0.81688 1.90465 1.16535 1.88176 1.57582 1.20711 0.97533 0.90712 1.01339 0.86783 1.22058 0.98147 1.01124 0.96300 1.20965 0.96935 0.89662 1.04569 1.23426 0.91471 1.01846 0.95914 0.81804 1.23727 0.98599 0.99337 0.92843 0.82258 1.20345 0.96927 0.90720 1.02921 1.20671 1.09660 0.72783 0.85062 1.92979 1.96898 1.29756 1.95429 1.92930 1.92109 1.69776 1.60741 0.92876 0.93547 0.90752 0.91730 0.90259 0.92815 0.86872 0.89120 0.93476 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.23 7.04 127.77 0.90 6.13 16 2 N -0.46 -23.87 3.02 -658.90 -1.99 -25.85 16 3 C -0.34 -19.93 9.27 84.04 0.78 -19.15 16 4 H 0.07 4.17 7.42 -2.91 -0.02 4.15 16 5 C 0.00 -0.09 5.14 84.93 0.44 0.35 16 6 N -0.90 -47.38 10.62 21.66 0.23 -47.15 16 7 Si 0.99 42.99 29.57 68.60 2.03 45.01 16 8 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 C 0.44 21.66 7.03 87.66 0.62 22.28 16 12 O -0.64 -37.24 15.63 -3.08 -0.05 -37.29 16 13 C -0.08 -2.82 1.64 -12.11 -0.02 -2.84 16 14 H 0.11 3.25 7.34 -2.38 -0.02 3.23 16 15 C -0.14 -4.30 4.51 30.65 0.14 -4.17 16 16 C -0.08 -1.68 5.83 30.24 0.18 -1.50 16 17 C -0.11 -1.99 5.99 -11.64 -0.07 -2.06 16 18 H 0.16 1.79 8.14 -2.39 -0.02 1.77 16 19 C -0.13 -2.81 6.23 -10.98 -0.07 -2.88 16 20 H 0.16 2.54 8.14 -2.39 -0.02 2.52 16 21 C -0.07 -2.27 4.19 29.82 0.13 -2.14 16 22 C 0.15 3.94 5.10 30.58 0.16 4.10 16 23 F -0.17 -4.33 17.60 44.97 0.79 -3.54 16 24 F -0.17 -5.73 14.03 44.97 0.63 -5.10 16 25 H 0.05 2.36 6.28 -2.39 -0.02 2.35 16 26 H 0.05 2.10 7.22 -2.39 -0.02 2.08 16 27 H 0.07 2.43 5.88 -2.38 -0.01 2.41 16 28 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 29 H 0.08 2.69 4.59 -2.39 -0.01 2.68 16 30 H 0.05 1.94 5.71 -2.39 -0.01 1.92 16 31 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.83 7.29 -2.39 -0.02 1.81 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -71.00 274.52 5.94 -65.06 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.13 Total: 10.72 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 3.17 Total: -1.87 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.76 Total: -73.00 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.05 Total: -37.29 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 1.42 Total: -8.64 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -71.00 5.94 -65.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328183741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.859 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds