Wall clock time and date at job start Sun Mar 29 2020 23:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31516 * 120.00297 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99907 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47496 * 89.99791 * 8 6 4 10 10 H 1.48503 * 109.47098 * 209.99926 * 8 6 4 11 11 H 1.48504 * 109.46915 * 329.99781 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09004 * 110.67615 * 31.76166 * 15 14 12 17 17 C 1.54892 * 110.75520 * 154.99410 * 15 14 12 18 18 C 1.54269 * 104.19753 * 156.25358 * 17 15 14 19 19 H 1.09001 * 117.41192 * 116.37268 * 18 17 15 20 20 C 1.53878 * 106.59875 * 336.39645 * 18 17 15 21 21 H 1.08996 * 121.33183 * 138.62369 * 20 18 17 22 22 C 1.54274 * 106.59768 * 359.97438 * 20 18 17 23 23 C 1.52995 * 59.81015 * 246.60406 * 20 18 17 24 24 F 1.39904 * 117.46298 * 252.40351 * 23 20 18 25 25 F 1.39902 * 117.46312 * 107.59764 * 23 20 18 26 26 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 28 28 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 29 29 H 0.97001 * 119.99846 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 31 31 H 1.08993 * 110.48924 * 274.93636 * 17 15 14 32 32 H 1.09004 * 110.48424 * 37.44808 * 17 15 14 33 33 H 1.09000 * 110.48851 * 264.93323 * 22 20 18 34 34 H 1.08999 * 110.48144 * 142.28845 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8593 3.5567 8 14 0.6258 1.2800 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9770 1.9956 3.9069 11 1 0.8491 2.1774 1.4921 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 2.3032 -2.0039 -3.4666 17 6 1.2738 -0.6683 -4.8596 18 6 2.1773 -0.8938 -6.0895 19 1 1.9167 -1.7125 -6.7603 20 6 3.6255 -0.6768 -5.6169 21 1 4.4332 -1.3301 -5.9466 22 6 3.5515 -0.3264 -4.1163 23 6 2.9895 0.2907 -6.6170 24 9 3.4312 0.2306 -7.9431 25 9 2.6470 1.5654 -6.1530 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.9031 -0.5276 4.4376 30 1 1.1537 0.5418 -2.5435 31 1 0.4422 -1.3729 -4.8628 32 1 0.9040 0.3568 -4.8382 33 1 3.5515 0.7546 -3.9765 34 1 4.3820 -0.7818 -3.5769 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329367464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:48 Heat of formation + Delta-G solvation = -104.295893 kcal Electronic energy + Delta-G solvation = -19492.817108 eV Core-core repulsion = 16062.440298 eV Total energy + Delta-G solvation = -3430.376810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.88779 -47.55811 -39.83239 -38.28657 -34.00303 -33.84256 -31.35123 -29.42740 -28.70465 -25.14909 -23.61309 -22.01837 -20.75823 -20.55300 -19.46962 -18.04445 -17.01867 -16.72805 -16.28744 -16.09588 -15.46072 -15.06842 -14.45818 -14.26204 -14.12835 -13.77406 -13.31591 -13.21455 -13.01583 -12.75478 -12.61792 -12.30808 -11.80425 -11.73251 -11.52724 -11.39460 -10.98493 -10.65250 -10.43806 -10.30506 -10.07366 -9.64902 -9.11416 -8.77179 -8.65730 -8.56762 -6.06036 -4.06458 2.69560 2.75621 3.22552 3.30188 3.36014 3.51071 3.57712 3.88001 4.13037 4.36590 4.37062 4.70965 4.78435 4.99787 5.11383 5.21799 5.23582 5.35086 5.56258 5.65514 5.70453 5.76527 5.99648 6.09504 6.13707 6.31452 6.42700 6.70852 6.90627 7.14348 7.53010 8.06948 8.53662 9.03845 9.13978 9.52907 11.06920 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.043848 B = 0.004482 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.423160 B = 6246.117234 C = 6473.309429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 H 0.053 0.947 4 C -0.506 4.506 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.530 3.470 13 O -0.529 6.529 14 N -0.740 5.740 15 C 0.147 3.853 16 H 0.102 0.898 17 C -0.106 4.106 18 C -0.158 4.158 19 H 0.138 0.862 20 C -0.153 4.153 21 H 0.137 0.863 22 C -0.112 4.112 23 C 0.213 3.787 24 F -0.161 7.161 25 F -0.159 7.159 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.264 0.736 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 3.064 -20.130 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.319 3.681 13 O -0.403 6.403 14 N -0.394 5.394 15 C 0.041 3.959 16 H 0.120 0.880 17 C -0.144 4.144 18 C -0.177 4.177 19 H 0.156 0.844 20 C -0.173 4.173 21 H 0.155 0.845 22 C -0.151 4.151 23 C 0.177 3.823 24 F -0.141 7.141 25 F -0.140 7.140 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.231 0.769 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.530 2.349 -19.816 20.013 hybrid contribution -0.823 1.421 -0.148 1.649 sum -2.352 3.770 -19.965 20.453 Atomic orbital electron populations 1.22114 0.97310 1.01507 0.99262 1.19323 0.93235 0.97582 0.92564 0.92977 1.20936 1.32133 1.14120 0.87227 0.88881 1.24983 0.95826 0.96558 0.95768 1.69882 1.45468 1.40169 0.97877 0.86913 0.80689 0.83826 0.77095 1.20528 1.22319 1.19263 1.21316 0.78716 0.84166 0.83916 1.90583 1.37014 1.26269 1.86418 1.46217 1.55351 1.32556 1.05239 1.21903 0.91058 0.98620 0.84334 0.87985 1.22253 0.97658 1.03629 0.90833 1.24506 0.95153 0.97839 1.00221 0.84429 1.24584 0.97931 0.99606 0.95159 0.84508 1.22474 0.99904 1.02532 0.90216 1.20199 1.04525 0.78998 0.78605 1.93019 1.89904 1.96329 1.34837 1.93005 1.92470 1.40828 1.87665 0.92358 0.93289 0.94822 0.92556 0.76920 0.89268 0.89812 0.89926 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.57 37.16 0.32 -2.55 16 2 C -0.01 -0.12 2.23 -92.92 -0.21 -0.33 16 3 H 0.05 1.15 7.20 -51.92 -0.37 0.78 16 4 C -0.51 -14.42 8.96 -34.44 -0.31 -14.73 16 5 H 0.09 3.03 7.00 -52.49 -0.37 2.66 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 8 Si 0.88 21.10 24.37 -169.99 -4.14 16.96 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -5.92 6.53 56.52 0.37 -5.55 16 12 C 0.53 11.03 7.15 -10.98 -0.08 10.95 16 13 O -0.53 -13.06 15.10 5.55 0.08 -12.97 16 14 N -0.74 -11.15 5.08 -51.87 -0.26 -11.41 16 15 C 0.15 1.86 3.27 -65.93 -0.22 1.64 16 16 H 0.10 1.45 7.55 -51.93 -0.39 1.06 16 17 C -0.11 -0.99 6.14 -25.07 -0.15 -1.15 16 18 C -0.16 -1.37 6.92 -89.50 -0.62 -1.99 16 19 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 20 C -0.15 -1.47 6.92 -89.50 -0.62 -2.09 16 21 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.11 -1.33 6.20 -25.06 -0.16 -1.49 16 23 C 0.21 2.23 5.13 -26.73 -0.14 2.09 16 24 F -0.16 -1.78 17.60 2.25 0.04 -1.74 16 25 F -0.16 -1.90 16.20 2.25 0.04 -1.87 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 28 H 0.03 0.52 7.57 -51.93 -0.39 0.13 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.40 4.99 7.99 -40.82 -0.33 4.66 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16 33 H 0.08 1.01 7.65 -51.93 -0.40 0.61 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -32.65 284.52 -5.56 -38.21 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.11 Total: 3.01 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.27 Total: -7.73 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.51 Total: -38.15 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.96 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.65 -5.56 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.086 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds