Wall clock time and date at job start Sun Mar 29 2020 23:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31516 * 120.00297 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99907 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47496 * 89.99791 * 8 6 4 10 10 H 1.48503 * 109.47098 * 209.99926 * 8 6 4 11 11 H 1.48504 * 109.46915 * 329.99781 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09004 * 110.67615 * 31.76166 * 15 14 12 17 17 C 1.54892 * 110.75520 * 154.99410 * 15 14 12 18 18 C 1.54269 * 104.19753 * 156.25358 * 17 15 14 19 19 H 1.09001 * 117.41192 * 116.37268 * 18 17 15 20 20 C 1.53878 * 106.59875 * 336.39645 * 18 17 15 21 21 H 1.08996 * 121.33183 * 138.62369 * 20 18 17 22 22 C 1.54274 * 106.59768 * 359.97438 * 20 18 17 23 23 C 1.52995 * 59.81015 * 246.60406 * 20 18 17 24 24 F 1.39904 * 117.46298 * 252.40351 * 23 20 18 25 25 F 1.39902 * 117.46312 * 107.59764 * 23 20 18 26 26 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 28 28 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 29 29 H 0.97001 * 119.99846 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 31 31 H 1.08993 * 110.48924 * 274.93636 * 17 15 14 32 32 H 1.09004 * 110.48424 * 37.44808 * 17 15 14 33 33 H 1.09000 * 110.48851 * 264.93323 * 22 20 18 34 34 H 1.08999 * 110.48144 * 142.28845 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8593 3.5567 8 14 0.6258 1.2800 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9770 1.9956 3.9069 11 1 0.8491 2.1774 1.4921 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 2.3032 -2.0039 -3.4666 17 6 1.2738 -0.6683 -4.8596 18 6 2.1773 -0.8938 -6.0895 19 1 1.9167 -1.7125 -6.7603 20 6 3.6255 -0.6768 -5.6169 21 1 4.4332 -1.3301 -5.9466 22 6 3.5515 -0.3264 -4.1163 23 6 2.9895 0.2907 -6.6170 24 9 3.4312 0.2306 -7.9431 25 9 2.6470 1.5654 -6.1530 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.9031 -0.5276 4.4376 30 1 1.1537 0.5418 -2.5435 31 1 0.4422 -1.3729 -4.8628 32 1 0.9040 0.3568 -4.8382 33 1 3.5515 0.7546 -3.9765 34 1 4.3820 -0.7818 -3.5769 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329367464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:48 Heat of formation + Delta-G solvation = -127.549589 kcal Electronic energy + Delta-G solvation = -19493.825464 eV Core-core repulsion = 16062.440298 eV Total energy + Delta-G solvation = -3431.385166 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.70968 -48.39131 -41.05963 -39.56992 -35.77723 -35.33062 -33.31107 -30.57549 -29.54379 -27.08586 -25.14486 -23.13155 -21.73028 -21.51751 -20.89904 -18.86281 -18.77073 -17.92159 -17.77658 -16.95225 -16.90405 -16.42113 -16.02299 -15.56364 -15.09281 -14.92803 -14.66092 -14.60878 -14.10174 -13.96691 -13.95275 -13.67950 -13.38057 -12.80695 -12.62362 -12.54121 -12.51228 -12.32878 -12.09499 -11.46143 -11.31870 -11.19207 -10.84255 -10.75996 -10.44933 -9.99320 -8.25439 -6.33089 1.34917 1.41541 1.52562 1.81913 1.89318 2.04279 2.35371 2.37930 3.08247 3.10448 3.24340 3.56678 3.89756 3.98248 4.10515 4.17648 4.24049 4.36902 4.45781 4.53188 4.63851 4.75334 4.82320 4.88605 4.96784 5.02591 5.07555 5.17323 5.48030 5.55406 5.63146 6.28154 6.69923 6.87336 7.28555 7.52292 8.92290 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.043848 B = 0.004482 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.423160 B = 6246.117234 C = 6473.309429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 H 0.068 0.932 4 C -0.520 4.520 5 H 0.030 0.970 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.960 3.040 9 H -0.260 1.260 10 H -0.302 1.302 11 H -0.231 1.231 12 C 0.531 3.469 13 O -0.581 6.581 14 N -0.715 5.715 15 C 0.139 3.861 16 H 0.084 0.916 17 C -0.097 4.097 18 C -0.137 4.137 19 H 0.166 0.834 20 C -0.154 4.154 21 H 0.153 0.847 22 C -0.112 4.112 23 C 0.202 3.798 24 F -0.165 7.165 25 F -0.170 7.170 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.266 0.734 30 H 0.414 0.586 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 5.054 -22.652 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.086 0.914 4 C -0.558 4.558 5 H 0.048 0.952 6 C -0.191 4.191 7 N -0.594 5.594 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.230 1.230 11 H -0.154 1.154 12 C 0.319 3.681 13 O -0.460 6.460 14 N -0.368 5.368 15 C 0.034 3.966 16 H 0.102 0.898 17 C -0.134 4.134 18 C -0.156 4.156 19 H 0.183 0.817 20 C -0.174 4.174 21 H 0.171 0.829 22 C -0.151 4.151 23 C 0.165 3.835 24 F -0.145 7.145 25 F -0.151 7.151 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.251 0.749 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.822 4.372 -22.418 23.158 hybrid contribution -0.007 0.725 0.598 0.940 sum -3.829 5.098 -21.820 22.732 Atomic orbital electron populations 1.22013 0.94335 1.01717 1.01587 1.19285 0.95551 0.97447 0.90995 0.91411 1.21118 1.31522 1.12802 0.90396 0.95193 1.26036 0.97497 1.00697 0.94860 1.70082 1.47772 1.42843 0.98725 0.85702 0.78807 0.79052 0.77942 1.18602 1.23004 1.15370 1.21009 0.78312 0.83471 0.85282 1.90574 1.39490 1.28600 1.87293 1.45872 1.54214 1.32527 1.04206 1.22077 0.92658 0.97463 0.84382 0.89763 1.22214 0.97401 1.04833 0.88977 1.24627 0.93926 0.97255 0.99757 0.81652 1.24538 0.99587 0.99864 0.93388 0.82904 1.22359 0.98784 1.02021 0.91905 1.20393 1.05696 0.78913 0.78448 1.93010 1.90081 1.96316 1.35120 1.92980 1.92596 1.41704 1.87788 0.93413 0.93806 0.89398 0.92467 0.74877 0.87254 0.88837 0.90237 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.57 71.98 0.62 -4.45 16 2 C -0.01 -0.49 2.23 -12.29 -0.03 -0.52 16 3 H 0.07 2.81 7.20 -2.38 -0.02 2.79 16 4 C -0.52 -30.73 8.96 25.60 0.23 -30.50 16 5 H 0.03 2.09 7.00 -2.91 -0.02 2.07 16 6 C 0.01 0.31 5.45 84.65 0.46 0.77 16 7 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 8 Si 0.96 42.70 24.37 68.60 1.67 44.37 16 9 H -0.26 -10.79 6.87 99.48 0.68 -10.11 16 10 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.23 -8.83 6.53 99.48 0.65 -8.18 16 12 C 0.53 21.97 7.15 87.66 0.63 22.60 16 13 O -0.58 -29.96 15.10 -3.04 -0.05 -30.00 16 14 N -0.72 -20.00 5.08 -436.40 -2.21 -22.21 16 15 C 0.14 3.27 3.27 46.29 0.15 3.42 16 16 H 0.08 2.35 7.55 -2.39 -0.02 2.33 16 17 C -0.10 -1.45 6.14 31.67 0.19 -1.25 16 18 C -0.14 -1.88 6.92 -10.07 -0.07 -1.95 16 19 H 0.17 1.45 8.14 -2.39 -0.02 1.43 16 20 C -0.15 -2.63 6.92 -10.07 -0.07 -2.69 16 21 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 22 C -0.11 -2.53 6.20 31.68 0.20 -2.33 16 23 C 0.20 3.68 5.13 30.59 0.16 3.84 16 24 F -0.16 -3.26 17.60 44.97 0.79 -2.47 16 25 F -0.17 -3.66 16.20 44.97 0.73 -2.93 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.65 3.27 -2.39 -0.01 1.64 16 28 H 0.09 2.24 7.57 -2.38 -0.02 2.22 16 29 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.41 8.74 7.99 -92.71 -0.74 8.00 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.29 7.53 -2.38 -0.02 1.28 16 33 H 0.08 1.84 7.65 -2.39 -0.02 1.82 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -76.77 284.52 4.01 -72.76 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.31 Total: 14.38 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 2.47 Total: -13.08 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.92 Total: -83.03 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.52 Total: -5.40 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.67 Total: 44.37 kcal Total: -76.77 4.01 -72.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.789 kcal (2) G-P(sol) polarization free energy of solvation -76.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds