Wall clock time and date at job start Sun Mar 29 2020 23:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 117.00058 * 2 1 4 4 O 1.20827 * 119.99681 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00150 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.90678 * 300.70315 * 5 3 2 7 7 C 1.53994 * 109.91780 * 61.80734 * 5 3 2 8 8 C 1.54590 * 105.14312 * 120.77648 * 7 5 3 9 9 H 1.09007 * 110.72508 * 263.42405 * 8 7 5 10 10 O 1.42900 * 110.72518 * 140.31471 * 8 7 5 11 11 C 1.54940 * 102.92203 * 21.95574 * 8 7 5 12 12 N 1.47900 * 110.08124 * 179.49410 * 5 3 2 13 13 C 1.46898 * 111.00131 * 94.71022 * 12 5 3 14 14 C 1.53007 * 109.47221 * 169.99927 * 13 12 5 15 15 H 1.08998 * 109.46816 * 60.00089 * 14 13 12 16 16 O 1.42900 * 109.46982 * 300.00196 * 14 13 12 17 17 C 1.50701 * 109.46740 * 179.97438 * 14 13 12 18 18 H 1.07994 * 120.00101 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99310 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99638 * 179.97438 * 19 17 14 21 21 Si 1.86795 * 120.00352 * 0.02562 * 19 17 14 22 22 H 1.48495 * 109.47543 * 89.99673 * 21 19 17 23 23 H 1.48503 * 109.46963 * 209.99918 * 21 19 17 24 24 H 1.48506 * 109.46873 * 329.99659 * 21 19 17 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46736 * 299.99585 * 1 2 3 27 27 H 1.09001 * 109.46933 * 59.99686 * 1 2 3 28 28 H 1.09005 * 110.30831 * 239.69098 * 7 5 3 29 29 H 1.09001 * 110.30744 * 1.75679 * 7 5 3 30 30 H 0.96705 * 113.99405 * 180.02562 * 10 8 7 31 31 H 1.08998 * 110.66967 * 81.01745 * 11 8 7 32 32 H 1.09004 * 110.66758 * 204.15345 * 11 8 7 33 33 H 1.08992 * 109.47233 * 289.99929 * 13 12 5 34 34 H 1.08998 * 109.47153 * 50.00222 * 13 12 5 35 35 H 0.96704 * 113.99742 * 299.99461 * 16 14 13 36 36 H 0.96997 * 120.00163 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9647 0.7716 0.8804 7 6 4.1256 0.6196 -1.2770 8 6 4.9234 1.7365 -1.9882 9 1 4.3163 2.2145 -2.7571 10 8 6.1302 1.2168 -2.5498 11 6 5.2357 2.7257 -0.8373 12 7 4.0008 2.6886 -0.0127 13 6 4.2629 3.1705 1.3500 14 6 4.9422 4.5400 1.2848 15 1 4.2900 5.2449 0.7693 16 8 6.1767 4.4260 0.5740 17 6 5.2106 5.0346 2.6828 18 1 4.9256 4.4323 3.5326 19 6 5.8210 6.2556 2.8766 20 7 6.0547 6.6876 4.0967 21 14 6.3145 7.2971 1.4066 22 1 5.1919 8.1963 1.0376 23 1 7.5069 8.1110 1.7546 24 1 6.6374 6.4117 0.2588 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.7839 -0.2100 -1.0191 29 1 3.3106 0.2717 -1.9118 30 1 6.6677 1.8779 -3.0072 31 1 6.0945 2.3846 -0.2592 32 1 5.4074 3.7287 -1.2281 33 1 3.3214 3.2575 1.8920 34 1 4.9152 2.4656 1.8654 35 1 6.8074 3.8136 0.9769 36 1 6.4845 7.5464 4.2331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332978759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:56 Heat of formation + Delta-G solvation = -161.708787 kcal Electronic energy + Delta-G solvation = -20526.125399 eV Core-core repulsion = 17204.346495 eV Total energy + Delta-G solvation = -3321.778905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61204 -38.96982 -36.66203 -36.28792 -35.16593 -32.30987 -31.37461 -29.39786 -28.09545 -27.31192 -24.69296 -22.72177 -21.30796 -20.39633 -20.15730 -17.76989 -17.48856 -17.20294 -16.65907 -16.21431 -15.24527 -14.86697 -14.76069 -14.45801 -14.06896 -13.72576 -13.42281 -13.17012 -12.86495 -12.73851 -12.40467 -12.36279 -11.97959 -11.85525 -11.50970 -11.07921 -10.91864 -10.75002 -10.58509 -10.37053 -10.24304 -9.96611 -9.84301 -9.07942 -8.64375 -8.24994 -8.14967 -6.15296 -4.27111 2.35292 2.63178 3.39024 3.47752 3.71381 3.91425 4.48258 4.51308 4.61393 4.65403 4.93679 5.04830 5.10876 5.13007 5.17107 5.25181 5.43713 5.51990 5.71715 5.77798 5.78140 5.93820 5.99717 6.16920 6.39219 6.41154 6.64306 7.06320 7.06959 7.40556 7.60062 7.63402 7.94019 8.23695 8.77190 8.93132 9.48490 10.95282 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.006455 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.534163 B = 4336.400498 C = 5229.845585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.464 3.536 4 O -0.477 6.477 5 C 0.074 3.926 6 H 0.091 0.909 7 C -0.109 4.109 8 C 0.087 3.913 9 H 0.070 0.930 10 O -0.565 6.565 11 C 0.028 3.972 12 N -0.496 5.496 13 C 0.034 3.966 14 C 0.198 3.802 15 H 0.065 0.935 16 O -0.579 6.579 17 C -0.564 4.564 18 H 0.071 0.929 19 C 0.084 3.916 20 N -0.892 5.892 21 Si 0.875 3.125 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.217 1.217 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.382 0.618 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.353 0.647 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -13.592 -11.609 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.304 3.696 4 O -0.361 6.361 5 C -0.036 4.036 6 H 0.109 0.891 7 C -0.147 4.147 8 C 0.028 3.972 9 H 0.088 0.912 10 O -0.370 6.370 11 C -0.100 4.100 12 N -0.222 5.222 13 C -0.094 4.094 14 C 0.141 3.859 15 H 0.083 0.917 16 O -0.386 6.386 17 C -0.602 4.602 18 H 0.090 0.910 19 C -0.120 4.120 20 N -0.529 5.529 21 Si 0.701 3.299 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.140 1.140 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.229 0.771 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.200 0.800 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.609 -12.940 -11.845 18.418 hybrid contribution 0.880 0.373 0.281 0.996 sum -4.729 -12.567 -11.565 17.721 Atomic orbital electron populations 1.23210 0.76699 1.03297 1.02543 1.86492 1.23119 1.33938 1.84784 1.23652 0.91678 0.81262 0.73032 1.90679 1.66415 1.36140 1.42879 1.21952 0.88072 0.93182 1.00398 0.89130 1.22247 0.99678 0.98314 0.94466 1.22915 0.85717 0.93566 0.95034 0.91223 1.86438 1.35141 1.39914 1.75521 1.24070 0.91270 1.01048 0.93583 1.64349 1.29467 1.13718 1.14640 1.23047 1.00930 0.99112 0.86280 1.19764 0.82446 0.90858 0.92832 0.91686 1.86761 1.28695 1.67787 1.55326 1.21426 1.42177 1.05060 0.91542 0.91049 1.24994 0.93715 0.97217 0.96116 1.69956 1.41400 1.20413 1.21137 0.86971 0.77665 0.79746 0.85493 1.21379 1.22380 1.13972 0.88352 0.91960 0.92057 0.89039 0.90192 0.77074 0.92131 0.87400 0.90327 0.94730 0.80003 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.76 10.52 -39.26 -0.41 -5.18 16 3 C 0.46 7.22 7.08 36.00 0.25 7.48 16 4 O -0.48 -9.03 16.22 -18.75 -0.30 -9.33 16 5 C 0.07 1.09 2.98 -67.80 -0.20 0.89 16 6 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 7 C -0.11 -1.35 6.30 -25.38 -0.16 -1.51 16 8 C 0.09 1.12 4.44 -24.87 -0.11 1.01 16 9 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 10 O -0.56 -6.66 13.40 -35.23 -0.47 -7.13 16 11 C 0.03 0.42 4.37 -1.89 -0.01 0.41 16 12 N -0.50 -8.57 4.55 -223.94 -1.02 -9.59 16 13 C 0.03 0.67 4.82 -3.82 -0.02 0.65 16 14 C 0.20 4.53 2.40 -27.88 -0.07 4.46 16 15 H 0.07 1.60 7.57 -51.93 -0.39 1.21 16 16 O -0.58 -11.98 6.41 -35.23 -0.23 -12.21 16 17 C -0.56 -15.48 9.34 -34.44 -0.32 -15.80 16 18 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 19 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 20 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 21 Si 0.87 21.60 26.99 -169.99 -4.59 17.01 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.22 -5.11 5.30 56.52 0.30 -4.81 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 28 H 0.09 1.05 8.07 -51.93 -0.42 0.64 16 29 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.38 3.06 9.12 45.56 0.42 3.47 16 31 H 0.06 0.92 6.81 -51.93 -0.35 0.57 16 32 H 0.11 1.80 6.84 -51.93 -0.35 1.44 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 34 H 0.03 0.65 7.81 -51.93 -0.41 0.25 16 35 H 0.35 6.55 8.33 45.56 0.38 6.93 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -33.33 296.09 -5.14 -38.47 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.69 Total: 8.52 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 0.34 Total: 1.31 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.25 Total: -35.93 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.41 Total: -33.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.33 -5.14 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332978759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.240 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds