Wall clock time and date at job start Sun Mar 29 2020 23:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 117.00058 * 2 1 4 4 O 1.20827 * 119.99681 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00150 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.90678 * 300.70315 * 5 3 2 7 7 C 1.53994 * 109.91780 * 61.80734 * 5 3 2 8 8 C 1.54590 * 105.14312 * 120.77648 * 7 5 3 9 9 H 1.09007 * 110.72508 * 263.42405 * 8 7 5 10 10 O 1.42900 * 110.72518 * 140.31471 * 8 7 5 11 11 C 1.54940 * 102.92203 * 21.95574 * 8 7 5 12 12 N 1.47900 * 110.08124 * 179.49410 * 5 3 2 13 13 C 1.46898 * 111.00131 * 94.71022 * 12 5 3 14 14 C 1.53007 * 109.47221 * 169.99927 * 13 12 5 15 15 H 1.08998 * 109.46816 * 60.00089 * 14 13 12 16 16 O 1.42900 * 109.46982 * 300.00196 * 14 13 12 17 17 C 1.50701 * 109.46740 * 179.97438 * 14 13 12 18 18 H 1.07994 * 120.00101 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99310 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99638 * 179.97438 * 19 17 14 21 21 Si 1.86795 * 120.00352 * 0.02562 * 19 17 14 22 22 H 1.48495 * 109.47543 * 89.99673 * 21 19 17 23 23 H 1.48503 * 109.46963 * 209.99918 * 21 19 17 24 24 H 1.48506 * 109.46873 * 329.99659 * 21 19 17 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46736 * 299.99585 * 1 2 3 27 27 H 1.09001 * 109.46933 * 59.99686 * 1 2 3 28 28 H 1.09005 * 110.30831 * 239.69098 * 7 5 3 29 29 H 1.09001 * 110.30744 * 1.75679 * 7 5 3 30 30 H 0.96705 * 113.99405 * 180.02562 * 10 8 7 31 31 H 1.08998 * 110.66967 * 81.01745 * 11 8 7 32 32 H 1.09004 * 110.66758 * 204.15345 * 11 8 7 33 33 H 1.08992 * 109.47233 * 289.99929 * 13 12 5 34 34 H 1.08998 * 109.47153 * 50.00222 * 13 12 5 35 35 H 0.96704 * 113.99742 * 299.99461 * 16 14 13 36 36 H 0.96997 * 120.00163 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9647 0.7716 0.8804 7 6 4.1256 0.6196 -1.2770 8 6 4.9234 1.7365 -1.9882 9 1 4.3163 2.2145 -2.7571 10 8 6.1302 1.2168 -2.5498 11 6 5.2357 2.7257 -0.8373 12 7 4.0008 2.6886 -0.0127 13 6 4.2629 3.1705 1.3500 14 6 4.9422 4.5400 1.2848 15 1 4.2900 5.2449 0.7693 16 8 6.1767 4.4260 0.5740 17 6 5.2106 5.0346 2.6828 18 1 4.9256 4.4323 3.5326 19 6 5.8210 6.2556 2.8766 20 7 6.0547 6.6876 4.0967 21 14 6.3145 7.2971 1.4066 22 1 5.1919 8.1963 1.0376 23 1 7.5069 8.1110 1.7546 24 1 6.6374 6.4117 0.2588 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.7839 -0.2100 -1.0191 29 1 3.3106 0.2717 -1.9118 30 1 6.6677 1.8779 -3.0072 31 1 6.0945 2.3846 -0.2592 32 1 5.4074 3.7287 -1.2281 33 1 3.3214 3.2575 1.8920 34 1 4.9152 2.4656 1.8654 35 1 6.8074 3.8136 0.9769 36 1 6.4845 7.5464 4.2331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332978759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:56 Heat of formation + Delta-G solvation = -190.542703 kcal Electronic energy + Delta-G solvation = -20527.375732 eV Core-core repulsion = 17204.346495 eV Total energy + Delta-G solvation = -3323.029237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79273 -40.19004 -38.08078 -37.48016 -36.42169 -34.46131 -32.72934 -30.61770 -29.70020 -28.23867 -26.40619 -24.00631 -22.64317 -21.89661 -21.33324 -19.42697 -18.82561 -18.29588 -17.84611 -17.34717 -16.89466 -16.53043 -16.16127 -16.13940 -15.37590 -14.86598 -14.72054 -14.47543 -14.34303 -14.12145 -13.77766 -13.60188 -13.33989 -12.98746 -12.88265 -12.79401 -12.56609 -12.24235 -11.86745 -11.78642 -11.62718 -11.42429 -11.12332 -10.94007 -10.79712 -9.97236 -9.49255 -8.36531 -6.52077 1.16241 1.42047 1.46291 1.58033 1.74693 2.43474 2.80623 3.01319 3.33709 3.54989 3.61457 3.85944 3.99362 4.07820 4.22662 4.28812 4.32708 4.32924 4.34453 4.52569 4.70002 4.78729 4.85485 4.90040 5.04098 5.21554 5.31691 5.34150 5.50274 5.78986 5.92296 6.07336 6.60144 6.78471 6.88786 7.13654 7.30369 8.77673 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.006455 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.534163 B = 4336.400498 C = 5229.845585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.519 6.519 5 C 0.072 3.928 6 H 0.102 0.898 7 C -0.102 4.102 8 C 0.099 3.901 9 H 0.075 0.925 10 O -0.569 6.569 11 C 0.029 3.971 12 N -0.511 5.511 13 C 0.049 3.951 14 C 0.212 3.788 15 H 0.050 0.950 16 O -0.570 6.570 17 C -0.567 4.567 18 H 0.035 0.965 19 C 0.029 3.971 20 N -0.940 5.940 21 Si 0.942 3.058 22 H -0.292 1.292 23 H -0.298 1.298 24 H -0.195 1.195 25 H 0.137 0.863 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.399 0.601 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.367 0.633 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 -15.164 -13.915 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.406 6.406 5 C -0.038 4.038 6 H 0.120 0.880 7 C -0.139 4.139 8 C 0.039 3.961 9 H 0.093 0.907 10 O -0.376 6.376 11 C -0.098 4.098 12 N -0.238 5.238 13 C -0.079 4.079 14 C 0.154 3.846 15 H 0.068 0.932 16 O -0.378 6.378 17 C -0.605 4.605 18 H 0.053 0.947 19 C -0.171 4.171 20 N -0.579 5.579 21 Si 0.766 3.234 22 H -0.219 1.219 23 H -0.225 1.225 24 H -0.117 1.117 25 H 0.155 0.845 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.249 0.751 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.215 0.785 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.184 -14.556 -14.173 20.967 hybrid contribution 0.697 0.754 1.036 1.458 sum -4.487 -13.802 -13.137 19.576 Atomic orbital electron populations 1.23544 0.74847 1.05757 1.02302 1.86482 1.24884 1.32356 1.84038 1.23857 0.92060 0.81327 0.71854 1.90666 1.67332 1.37579 1.45068 1.22050 0.87742 0.91763 1.02287 0.88019 1.22246 1.00150 0.98291 0.93254 1.22718 0.86246 0.92890 0.94225 0.90719 1.86413 1.34936 1.40719 1.75556 1.24023 0.90432 1.01198 0.94189 1.64201 1.30704 1.15943 1.12905 1.22654 0.99483 0.97752 0.88032 1.19361 0.83217 0.92184 0.89805 0.93250 1.86690 1.28176 1.68443 1.54466 1.21755 1.41161 1.04626 0.92955 0.94714 1.25876 0.93911 0.98627 0.98646 1.70084 1.43194 1.21200 1.23431 0.85960 0.76831 0.78017 0.82623 1.21910 1.22462 1.11651 0.84523 0.92652 0.91959 0.87602 0.89034 0.75107 0.91965 0.88790 0.92567 0.94000 0.78473 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -8.67 10.52 -51.43 -0.54 -9.21 16 3 C 0.47 13.98 7.08 71.24 0.50 14.48 16 4 O -0.52 -19.56 16.22 21.96 0.36 -19.20 16 5 C 0.07 1.96 2.98 44.31 0.13 2.10 16 6 H 0.10 2.58 7.57 -2.39 -0.02 2.56 16 7 C -0.10 -2.20 6.30 31.47 0.20 -2.00 16 8 C 0.10 2.23 4.44 31.80 0.14 2.37 16 9 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 10 O -0.57 -11.36 13.40 -148.98 -2.00 -13.36 16 11 C 0.03 0.81 4.37 86.65 0.38 1.19 16 12 N -0.51 -17.07 4.55 -862.42 -3.92 -20.99 16 13 C 0.05 1.92 4.82 86.31 0.42 2.34 16 14 C 0.21 9.63 2.40 29.85 0.07 9.70 16 15 H 0.05 2.42 7.57 -2.39 -0.02 2.41 16 16 O -0.57 -22.48 6.41 -148.98 -0.95 -23.43 16 17 C -0.57 -31.68 9.34 25.60 0.24 -31.44 16 18 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 19 C 0.03 1.68 5.47 84.66 0.46 2.14 16 20 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 21 Si 0.94 44.71 26.99 68.60 1.85 46.56 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.20 -8.48 5.30 99.48 0.53 -7.96 16 25 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.11 2.03 8.07 -2.38 -0.02 2.01 16 29 H 0.09 1.80 7.67 -2.39 -0.02 1.78 16 30 H 0.40 4.98 9.12 -74.05 -0.68 4.31 16 31 H 0.06 1.73 6.81 -2.39 -0.02 1.71 16 32 H 0.09 2.92 6.84 -2.38 -0.02 2.91 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16 35 H 0.37 12.76 8.33 -74.05 -0.62 12.14 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -72.49 296.09 -1.53 -74.03 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.37 Total: 21.18 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 3.74 Total: 2.58 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -3.62 Total: -79.15 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -3.14 Total: -65.20 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.85 Total: 46.56 kcal Total: -72.49 -1.53 -74.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332978759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.514 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds