Wall clock time and date at job start Sun Mar 29 2020 23:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00003 * 2 1 4 4 C 1.52996 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46659 * 304.99875 * 4 3 2 6 6 O 1.42902 * 109.47477 * 64.99574 * 4 3 2 7 7 C 1.42904 * 114.00011 * 270.00495 * 6 4 3 8 8 C 1.50700 * 109.47419 * 185.00104 * 4 3 2 9 9 O 1.21278 * 119.99680 * 245.00050 * 8 4 3 10 10 N 1.34770 * 120.00318 * 64.99312 * 8 4 3 11 11 C 1.47583 * 134.49494 * 180.02562 * 10 8 4 12 12 C 1.53945 * 86.11541 * 204.65773 * 11 10 8 13 13 O 1.42903 * 113.74155 * 90.74233 * 12 11 10 14 14 C 1.50704 * 113.74101 * 221.93630 * 12 11 10 15 15 H 1.07996 * 119.99852 * 358.07848 * 14 12 11 16 16 C 1.37883 * 119.99641 * 178.07674 * 14 12 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99749 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47315 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47279 * 120.00125 * 18 16 14 21 21 H 1.48497 * 109.47468 * 240.00254 * 18 16 14 22 22 C 1.47935 * 134.50020 * 0.03528 * 10 8 4 23 23 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47236 * 299.99714 * 1 2 3 25 25 H 1.09000 * 109.47285 * 60.00279 * 1 2 3 26 26 H 1.08997 * 109.47255 * 59.99336 * 3 2 1 27 27 H 1.09008 * 109.46701 * 299.99736 * 3 2 1 28 28 H 1.09003 * 109.46834 * 299.99614 * 7 6 4 29 29 H 1.08998 * 109.47000 * 59.99496 * 7 6 4 30 30 H 1.08995 * 109.46525 * 179.97438 * 7 6 4 31 31 H 1.08996 * 113.76772 * 90.36065 * 11 10 8 32 32 H 1.08991 * 113.86922 * 318.97468 * 11 10 8 33 33 H 0.96700 * 114.00311 * 181.92380 * 13 12 11 34 34 H 0.96996 * 120.00241 * 179.97438 * 17 16 14 35 35 H 1.08997 * 113.86757 * 41.07474 * 22 10 8 36 36 H 1.09004 * 113.76551 * 269.58365 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 8 3.9649 0.5796 -1.2219 7 6 4.0463 -0.8461 -1.1671 8 6 4.1480 2.5559 0.1232 9 8 4.8062 3.0105 -0.7884 10 7 3.9644 3.2771 1.2468 11 6 4.4000 4.6116 1.7021 12 6 4.2267 4.0654 3.1309 13 8 5.4106 3.4715 3.6674 14 6 3.5775 5.0408 4.0787 15 1 3.3110 6.0300 3.7368 16 6 3.3238 4.6703 5.3824 17 7 3.6487 3.4659 5.7988 18 14 2.5184 5.8790 6.5570 19 1 2.2534 7.1566 5.8479 20 1 1.2374 5.3119 7.0495 21 1 3.4236 6.1293 7.7072 22 6 3.2453 3.0490 2.5194 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 4.7575 -1.1399 -0.3951 29 1 3.0646 -1.2573 -0.9322 30 1 4.3786 -1.2283 -2.1322 31 1 3.7033 5.4109 1.4498 32 1 5.4320 4.8501 1.4451 33 1 5.2980 3.1010 4.5535 34 1 3.4706 3.2054 6.7160 35 1 3.3562 2.0390 2.9137 36 1 2.2103 3.3907 2.5064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347753232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:10 Heat of formation + Delta-G solvation = -133.738111 kcal Electronic energy + Delta-G solvation = -20393.508752 eV Core-core repulsion = 17072.942747 eV Total energy + Delta-G solvation = -3320.566005 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86726 -38.44186 -37.34665 -36.51624 -33.99959 -32.27062 -31.06464 -28.38481 -26.99789 -26.01078 -25.35015 -25.14585 -23.09784 -20.10411 -18.54667 -17.48841 -17.08908 -16.71038 -16.26577 -15.68791 -15.41958 -15.22798 -14.95273 -14.41356 -14.15043 -14.01242 -13.47266 -13.10203 -12.73916 -12.42899 -12.31200 -12.07821 -11.72025 -11.62355 -11.42458 -11.15467 -11.09426 -11.07098 -10.54732 -10.33999 -9.81706 -9.69824 -9.53510 -9.12678 -8.81139 -8.47386 -7.91549 -6.44029 -4.54440 2.92617 3.10341 3.14075 3.21018 3.24907 3.75997 4.12815 4.18240 4.79263 4.90683 5.01461 5.07736 5.26308 5.29771 5.42895 5.48168 5.54778 5.57335 5.65400 5.70543 5.88428 5.89523 6.10846 6.31917 6.40104 6.52326 6.60179 7.00619 7.03530 7.21409 7.58417 7.76848 8.36340 8.49549 8.67944 9.17028 9.37671 10.62782 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.005817 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.033364 B = 4812.190841 C = 5404.221369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.084 3.916 5 H 0.092 0.908 6 O -0.358 6.358 7 C 0.029 3.971 8 C 0.534 3.466 9 O -0.539 6.539 10 N -0.632 5.632 11 C 0.115 3.885 12 C 0.239 3.761 13 O -0.572 6.572 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.075 3.925 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.392 0.608 34 H 0.273 0.727 35 H 0.070 0.930 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -6.395 -5.680 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.031 4.031 4 C 0.022 3.978 5 H 0.109 0.891 6 O -0.276 6.276 7 C -0.067 4.067 8 C 0.321 3.679 9 O -0.416 6.416 10 N -0.368 5.368 11 C -0.006 4.006 12 C 0.197 3.803 13 O -0.383 6.383 14 C -0.575 4.575 15 H 0.091 0.909 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.048 4.048 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.350 -6.272 -6.920 10.763 hybrid contribution -1.094 0.249 1.467 1.847 sum -6.444 -6.023 -5.453 10.370 Atomic orbital electron populations 1.22752 0.80864 1.02643 1.00245 1.87825 1.19951 1.27454 1.95511 1.23037 0.92698 0.85429 1.01892 1.21810 0.92237 0.94152 0.89600 0.89072 1.87977 1.87921 1.19872 1.31793 1.22914 1.01057 0.80744 1.02007 1.19569 0.81540 0.85718 0.81103 1.90663 1.41053 1.71382 1.38521 1.50266 1.52220 1.19140 1.15161 1.23470 1.00000 0.84297 0.92860 1.19846 0.82711 0.88871 0.88839 1.86071 1.34834 1.78765 1.38671 1.21535 1.40029 1.00352 0.95584 0.90928 1.25072 0.94402 0.95400 0.98169 1.69402 1.47646 1.18453 1.18263 0.86286 0.78896 0.80976 0.80415 1.19422 1.20713 1.20611 1.24444 0.98350 1.02316 0.79644 0.89633 0.93737 0.94065 0.91285 0.92021 0.94235 0.92424 0.89837 0.89440 0.90931 0.75329 0.91703 0.91159 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.43 8.83 -40.08 -0.35 -5.78 16 3 C 0.05 0.71 5.54 37.16 0.21 0.92 16 4 C 0.08 1.48 2.69 -27.89 -0.08 1.40 16 5 H 0.09 1.54 7.79 -51.93 -0.40 1.14 16 6 O -0.36 -6.43 9.88 -59.70 -0.59 -7.02 16 7 C 0.03 0.39 10.71 101.05 1.08 1.48 16 8 C 0.53 11.26 7.41 -10.99 -0.08 11.18 16 9 O -0.54 -13.15 17.24 -14.30 -0.25 -13.40 16 10 N -0.63 -13.18 3.59 -178.01 -0.64 -13.82 16 11 C 0.12 2.46 8.23 -2.97 -0.02 2.44 16 12 C 0.24 5.55 1.40 -90.84 -0.13 5.42 16 13 O -0.57 -14.33 13.49 -35.23 -0.48 -14.81 16 14 C -0.54 -13.01 8.61 -34.44 -0.30 -13.30 16 15 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 17 N -0.90 -22.03 11.20 55.43 0.62 -21.41 16 18 Si 0.91 18.92 29.54 -169.99 -5.02 13.90 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.07 1.54 6.64 -2.76 -0.02 1.52 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 27 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.06 0.74 6.40 -51.93 -0.33 0.41 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.39 9.88 6.60 45.56 0.30 10.18 16 34 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.60 7.97 -51.93 -0.41 1.19 16 LS Contribution 307.29 15.07 4.63 4.63 Total: -1.00 -29.01 307.29 -4.93 -33.93 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.53 Total: 9.64 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 1.68 Total: 14.13 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.02 Total: -35.23 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.67 Total: -41.00 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.01 -4.93 -33.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347753232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.807 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds