Wall clock time and date at job start Sun Mar 29 2020 23:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00003 * 2 1 4 4 C 1.52996 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46659 * 304.99875 * 4 3 2 6 6 O 1.42902 * 109.47477 * 64.99574 * 4 3 2 7 7 C 1.42904 * 114.00011 * 270.00495 * 6 4 3 8 8 C 1.50700 * 109.47419 * 185.00104 * 4 3 2 9 9 O 1.21278 * 119.99680 * 245.00050 * 8 4 3 10 10 N 1.34770 * 120.00318 * 64.99312 * 8 4 3 11 11 C 1.47583 * 134.49494 * 180.02562 * 10 8 4 12 12 C 1.53945 * 86.11541 * 204.65773 * 11 10 8 13 13 O 1.42903 * 113.74155 * 90.74233 * 12 11 10 14 14 C 1.50704 * 113.74101 * 221.93630 * 12 11 10 15 15 H 1.07996 * 119.99852 * 358.07848 * 14 12 11 16 16 C 1.37883 * 119.99641 * 178.07674 * 14 12 11 17 17 N 1.31510 * 120.00287 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99749 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47315 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47279 * 120.00125 * 18 16 14 21 21 H 1.48497 * 109.47468 * 240.00254 * 18 16 14 22 22 C 1.47935 * 134.50020 * 0.03528 * 10 8 4 23 23 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47236 * 299.99714 * 1 2 3 25 25 H 1.09000 * 109.47285 * 60.00279 * 1 2 3 26 26 H 1.08997 * 109.47255 * 59.99336 * 3 2 1 27 27 H 1.09008 * 109.46701 * 299.99736 * 3 2 1 28 28 H 1.09003 * 109.46834 * 299.99614 * 7 6 4 29 29 H 1.08998 * 109.47000 * 59.99496 * 7 6 4 30 30 H 1.08995 * 109.46525 * 179.97438 * 7 6 4 31 31 H 1.08996 * 113.76772 * 90.36065 * 11 10 8 32 32 H 1.08991 * 113.86922 * 318.97468 * 11 10 8 33 33 H 0.96700 * 114.00311 * 181.92380 * 13 12 11 34 34 H 0.96996 * 120.00241 * 179.97438 * 17 16 14 35 35 H 1.08997 * 113.86757 * 41.07474 * 22 10 8 36 36 H 1.09004 * 113.76551 * 269.58365 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 8 3.9649 0.5796 -1.2219 7 6 4.0463 -0.8461 -1.1671 8 6 4.1480 2.5559 0.1232 9 8 4.8062 3.0105 -0.7884 10 7 3.9644 3.2771 1.2468 11 6 4.4000 4.6116 1.7021 12 6 4.2267 4.0654 3.1309 13 8 5.4106 3.4715 3.6674 14 6 3.5775 5.0408 4.0787 15 1 3.3110 6.0300 3.7368 16 6 3.3238 4.6703 5.3824 17 7 3.6487 3.4659 5.7988 18 14 2.5184 5.8790 6.5570 19 1 2.2534 7.1566 5.8479 20 1 1.2374 5.3119 7.0495 21 1 3.4236 6.1293 7.7072 22 6 3.2453 3.0490 2.5194 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 4.7575 -1.1399 -0.3951 29 1 3.0646 -1.2573 -0.9322 30 1 4.3786 -1.2283 -2.1322 31 1 3.7033 5.4109 1.4498 32 1 5.4320 4.8501 1.4451 33 1 5.2980 3.1010 4.5535 34 1 3.4706 3.2054 6.7160 35 1 3.3562 2.0390 2.9137 36 1 2.2103 3.3907 2.5064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347753232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:10 Heat of formation + Delta-G solvation = -155.400509 kcal Electronic energy + Delta-G solvation = -20394.448104 eV Core-core repulsion = 17072.942747 eV Total energy + Delta-G solvation = -3321.505357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47691 -39.86987 -38.76901 -37.86391 -35.84187 -34.14421 -32.44834 -30.00493 -28.02300 -27.37233 -27.06584 -26.52276 -24.44666 -21.81220 -20.18553 -19.27182 -18.50195 -18.09663 -17.60647 -17.12657 -16.92085 -16.52653 -16.36420 -16.01910 -15.85081 -15.15719 -14.87512 -14.66199 -14.41283 -13.90789 -13.74699 -13.52188 -13.39696 -12.90242 -12.83087 -12.78040 -12.47874 -12.25194 -12.22134 -12.15776 -11.40112 -11.07935 -10.86727 -10.68329 -10.53541 -10.26175 -9.65184 -8.25928 -6.42509 1.36519 1.46660 1.51553 1.58892 1.63140 2.41642 2.62242 2.77500 2.97896 3.48414 3.68988 3.78482 3.82784 4.13373 4.25708 4.34633 4.43554 4.51160 4.53417 4.55852 4.60324 4.65519 4.73490 4.82163 4.85592 4.89407 4.90047 5.22786 5.73926 5.92987 5.97864 6.01608 6.63781 6.69837 7.01265 7.31003 7.44641 8.80422 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.005817 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.033364 B = 4812.190841 C = 5404.221369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.057 3.943 4 C 0.089 3.911 5 H 0.097 0.903 6 O -0.384 6.384 7 C 0.025 3.975 8 C 0.528 3.472 9 O -0.578 6.578 10 N -0.630 5.630 11 C 0.114 3.886 12 C 0.219 3.781 13 O -0.586 6.586 14 C -0.553 4.553 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.915 5.915 18 Si 0.967 3.033 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.284 1.284 22 C 0.092 3.908 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.388 0.612 34 H 0.276 0.724 35 H 0.070 0.930 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -6.859 -5.500 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.020 4.020 4 C 0.028 3.972 5 H 0.115 0.885 6 O -0.303 6.303 7 C -0.070 4.070 8 C 0.317 3.683 9 O -0.459 6.459 10 N -0.365 5.365 11 C -0.008 4.008 12 C 0.177 3.823 13 O -0.398 6.398 14 C -0.591 4.591 15 H 0.092 0.908 16 C -0.166 4.166 17 N -0.556 5.556 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.210 1.210 22 C -0.030 4.030 23 H 0.125 0.875 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.912 -6.751 -6.738 11.779 hybrid contribution -0.592 0.352 1.400 1.560 sum -7.504 -6.399 -5.338 11.214 Atomic orbital electron populations 1.23006 0.78835 1.04379 1.00969 1.87794 1.22038 1.26410 1.95608 1.22810 0.90986 0.86229 1.01978 1.21709 0.93699 0.91879 0.89936 0.88500 1.87942 1.88209 1.22235 1.31891 1.23125 1.01816 0.78537 1.03539 1.20231 0.80864 0.86836 0.80336 1.90632 1.42855 1.72598 1.39800 1.50278 1.51963 1.18942 1.15304 1.23522 1.00018 0.85284 0.91996 1.20130 0.82834 0.89884 0.89405 1.86060 1.36259 1.78999 1.38497 1.21729 1.40456 1.00665 0.96285 0.90835 1.25710 0.94806 0.96738 0.99341 1.69460 1.47981 1.19477 1.18653 0.85364 0.77954 0.79157 0.78280 1.19188 1.20220 1.21016 1.24288 0.98449 1.01566 0.78743 0.87458 0.93183 0.93169 0.90990 0.92096 0.93651 0.91640 0.87763 0.87378 0.92132 0.75769 0.91465 0.91168 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -10.27 8.83 -144.34 -1.27 -11.54 16 3 C 0.06 1.66 5.54 71.98 0.40 2.06 16 4 C 0.09 3.07 2.69 29.85 0.08 3.15 16 5 H 0.10 3.18 7.79 -2.38 -0.02 3.16 16 6 O -0.38 -13.45 9.88 -125.59 -1.24 -14.69 16 7 C 0.03 0.64 10.71 113.37 1.21 1.85 16 8 C 0.53 22.19 7.41 87.66 0.65 22.84 16 9 O -0.58 -28.51 17.24 15.97 0.28 -28.23 16 10 N -0.63 -25.96 3.59 -839.33 -3.01 -28.97 16 11 C 0.11 4.82 8.23 86.49 0.71 5.53 16 12 C 0.22 10.07 1.40 -10.88 -0.02 10.05 16 13 O -0.59 -29.63 13.49 -148.98 -2.01 -31.64 16 14 C -0.55 -26.36 8.61 25.60 0.22 -26.14 16 15 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 16 C 0.03 1.65 5.39 84.66 0.46 2.10 16 17 N -0.92 -44.28 11.20 21.45 0.24 -44.04 16 18 Si 0.97 37.90 29.54 68.60 2.03 39.92 16 19 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 20 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 22 C 0.09 3.66 6.64 86.42 0.57 4.24 16 23 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 2.01 6.54 -2.39 -0.02 2.00 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.04 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.07 1.54 6.40 -2.39 -0.02 1.53 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 4.09 8.09 -2.39 -0.02 4.07 16 32 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.39 19.76 6.60 -74.06 -0.49 19.27 16 34 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 35 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.10 3.67 7.97 -2.39 -0.02 3.65 16 Total: -1.00 -60.59 307.29 1.14 -59.45 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.60 Total: 32.39 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 5.54 Total: 27.36 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.77 Total: -73.01 kcal Atomic # 8 Polarization: -81.86 SS G_CDS: -4.25 Total: -86.11 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.92 kcal Total: -60.59 1.14 -59.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347753232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.953 kcal (2) G-P(sol) polarization free energy of solvation -60.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds