Wall clock time and date at job start Sun Mar 29 2020 23:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.38234 * 119.99770 * 269.72517 * 13 12 10 15 15 C 1.38235 * 119.99933 * 179.78838 * 14 13 12 16 16 C 1.38240 * 119.99615 * 0.44078 * 15 14 13 17 17 C 1.50703 * 119.99825 * 179.83444 * 16 15 14 18 18 C 1.53788 * 113.61632 * 37.47390 * 17 16 15 19 19 C 1.53782 * 87.08227 * 220.02124 * 18 17 16 20 20 C 1.53784 * 87.08097 * 25.43308 * 19 18 17 21 21 C 1.38227 * 120.00231 * 359.81118 * 16 15 14 22 22 C 1.38232 * 119.99860 * 89.99959 * 13 12 10 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 1.08001 * 120.00330 * 359.97438 * 14 13 12 28 28 H 1.08002 * 120.00360 * 180.27290 * 15 14 13 29 29 H 1.08998 * 112.85411 * 168.78148 * 17 16 15 30 30 H 1.09004 * 113.60873 * 334.57072 * 18 17 16 31 31 H 1.08996 * 113.61206 * 105.46727 * 18 17 16 32 32 H 1.08999 * 113.60770 * 270.88540 * 19 18 17 33 33 H 1.08996 * 113.61053 * 139.97903 * 19 18 17 34 34 H 1.08999 * 113.61170 * 220.02316 * 20 19 18 35 35 H 1.08999 * 113.69138 * 89.12933 * 20 19 18 36 36 H 1.08002 * 120.00166 * 179.97438 * 21 16 15 37 37 H 1.07996 * 120.00605 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 6 2.2233 -6.0083 -0.0016 14 6 2.6681 -6.5368 -1.1990 15 6 3.5698 -7.5846 -1.1996 16 6 4.0197 -8.1098 -0.0026 17 6 4.9998 -9.2546 -0.0031 18 6 6.0514 -9.1647 -1.1217 19 6 5.8855 -10.6841 -1.2920 20 6 4.4731 -10.5162 -0.7073 21 6 3.5709 -7.5848 1.1947 22 6 2.6725 -6.5341 1.1953 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 2.3134 -6.1292 -2.1342 28 1 3.9207 -7.9946 -2.1351 29 1 5.4239 -9.4492 0.9819 30 1 5.7206 -8.5897 -1.9867 31 1 7.0398 -8.8701 -0.7691 32 1 6.5530 -11.2696 -0.6598 33 1 5.8916 -11.0100 -2.3320 34 1 4.1875 -11.3126 -0.0202 35 1 3.7099 -10.3108 -1.4580 36 1 3.9221 -7.9954 2.1299 37 1 2.3219 -6.1239 2.1308 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351114035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:18 Heat of formation + Delta-G solvation = -8.280108 kcal Electronic energy + Delta-G solvation = -18246.883849 eV Core-core repulsion = 15374.900125 eV Total energy + Delta-G solvation = -2871.983724 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.94709 -38.46754 -37.29737 -33.95434 -32.28467 -31.16132 -30.59474 -28.10934 -25.70235 -25.19125 -23.88507 -22.53971 -21.01168 -19.27636 -19.01994 -17.86241 -16.55793 -15.83845 -15.64447 -14.88086 -14.81614 -14.48195 -14.05328 -13.67258 -13.47687 -13.09871 -13.06356 -12.53277 -12.50963 -12.34094 -11.67677 -11.50044 -11.44558 -11.19224 -11.02090 -10.82019 -10.50429 -10.44738 -10.42846 -10.21319 -10.14552 -9.48797 -8.54774 -8.48985 -8.03303 -7.95294 -6.40263 -3.81190 1.67215 1.77625 3.20986 3.26395 3.31169 3.93474 3.99022 4.21983 4.53187 4.60246 4.63086 4.93023 5.10187 5.13077 5.20615 5.28329 5.30712 5.34611 5.53073 5.57277 5.66280 5.74510 5.79891 5.82134 5.86905 6.02528 6.03819 6.10327 6.25843 6.33305 6.43767 6.49223 6.76588 6.90928 7.04691 7.36140 7.56335 8.07121 8.62709 9.19098 9.56044 10.07963 10.77390 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.045598 B = 0.003587 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.920583 B = 7804.372764 C = 8043.719051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.587 6.587 12 C -0.099 4.099 13 C -0.043 4.043 14 C -0.105 4.105 15 C -0.117 4.117 16 C -0.085 4.085 17 C -0.069 4.069 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.105 4.105 23 H 0.272 0.728 24 H 0.393 0.607 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -18.159 -0.938 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.230 3.770 11 O -0.472 6.472 12 C -0.140 4.140 13 C -0.044 4.044 14 C -0.123 4.123 15 C -0.134 4.134 16 C -0.085 4.085 17 C -0.088 4.088 18 C -0.173 4.173 19 C -0.182 4.182 20 C -0.169 4.169 21 C -0.135 4.135 22 C -0.123 4.123 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.909 -17.980 -0.938 18.662 hybrid contribution -0.231 1.035 0.054 1.062 sum 4.678 -16.945 -0.884 17.601 Atomic orbital electron populations 1.69607 1.05920 1.28245 1.50605 1.25254 0.95630 0.99688 0.97333 0.85927 0.78775 0.80493 0.79084 1.19904 1.20956 1.19900 1.19669 0.93350 0.82324 1.47659 0.88029 1.41888 1.09199 1.04570 1.64341 1.19782 0.88278 0.84574 0.84409 1.90543 1.13847 1.87244 1.55558 1.20615 0.97274 0.92464 1.03636 1.19395 0.97051 0.94704 0.93214 1.20941 0.97617 0.96206 0.97571 1.20818 0.98110 0.97295 0.97224 1.19566 0.98319 0.97362 0.93286 1.21465 0.95171 0.93258 0.98865 1.23048 0.99062 0.96231 0.98950 1.22842 0.97381 0.96838 1.01089 1.22984 0.96851 0.97149 0.99867 1.20891 0.98232 0.97224 0.97146 1.20949 0.97626 0.96156 0.97594 0.91824 0.77390 0.89518 0.89525 0.86445 0.86618 0.88912 0.89617 0.91471 0.90356 0.91557 0.91620 0.89891 0.86698 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.51 9.68 -14.94 -0.14 -8.66 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.53 5.29 -10.96 -0.06 -14.58 16 10 C 0.44 10.71 7.78 -10.98 -0.09 10.62 16 11 O -0.59 -16.41 15.61 5.55 0.09 -16.32 16 12 C -0.10 -1.80 5.83 -29.03 -0.17 -1.97 16 13 C -0.04 -0.76 4.37 -104.62 -0.46 -1.22 16 14 C -0.11 -1.73 9.70 -39.58 -0.38 -2.11 16 15 C -0.12 -1.68 8.61 -39.58 -0.34 -2.02 16 16 C -0.09 -1.18 5.29 -104.62 -0.55 -1.73 16 17 C -0.07 -0.75 3.98 -90.95 -0.36 -1.12 16 18 C -0.14 -1.36 7.46 -25.91 -0.19 -1.56 16 19 C -0.14 -1.20 8.08 -25.92 -0.21 -1.41 16 20 C -0.13 -1.21 7.55 -25.91 -0.20 -1.41 16 21 C -0.12 -1.71 9.71 -39.58 -0.38 -2.09 16 22 C -0.11 -1.73 9.70 -39.58 -0.38 -2.12 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 25 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 26 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 27 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.12 1.41 6.66 -52.49 -0.35 1.06 16 29 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.09 0.90 6.31 -51.93 -0.33 0.57 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 36 H 0.11 1.40 8.05 -52.49 -0.42 0.98 16 37 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -31.69 313.11 -8.64 -40.34 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.13 Total: 9.92 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.96 Total: -16.28 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.67 Total: -38.63 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.69 -8.64 -40.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351114035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.056 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds