Wall clock time and date at job start Sun Mar 29 2020 23:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.38234 * 119.99770 * 269.72517 * 13 12 10 15 15 C 1.38235 * 119.99933 * 179.78838 * 14 13 12 16 16 C 1.38240 * 119.99615 * 0.44078 * 15 14 13 17 17 C 1.50703 * 119.99825 * 179.83444 * 16 15 14 18 18 C 1.53788 * 113.61632 * 37.47390 * 17 16 15 19 19 C 1.53782 * 87.08227 * 220.02124 * 18 17 16 20 20 C 1.53784 * 87.08097 * 25.43308 * 19 18 17 21 21 C 1.38227 * 120.00231 * 359.81118 * 16 15 14 22 22 C 1.38232 * 119.99860 * 89.99959 * 13 12 10 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 1.08001 * 120.00330 * 359.97438 * 14 13 12 28 28 H 1.08002 * 120.00360 * 180.27290 * 15 14 13 29 29 H 1.08998 * 112.85411 * 168.78148 * 17 16 15 30 30 H 1.09004 * 113.60873 * 334.57072 * 18 17 16 31 31 H 1.08996 * 113.61206 * 105.46727 * 18 17 16 32 32 H 1.08999 * 113.60770 * 270.88540 * 19 18 17 33 33 H 1.08996 * 113.61053 * 139.97903 * 19 18 17 34 34 H 1.08999 * 113.61170 * 220.02316 * 20 19 18 35 35 H 1.08999 * 113.69138 * 89.12933 * 20 19 18 36 36 H 1.08002 * 120.00166 * 179.97438 * 21 16 15 37 37 H 1.07996 * 120.00605 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 6 2.2233 -6.0083 -0.0016 14 6 2.6681 -6.5368 -1.1990 15 6 3.5698 -7.5846 -1.1996 16 6 4.0197 -8.1098 -0.0026 17 6 4.9998 -9.2546 -0.0031 18 6 6.0514 -9.1647 -1.1217 19 6 5.8855 -10.6841 -1.2920 20 6 4.4731 -10.5162 -0.7073 21 6 3.5709 -7.5848 1.1947 22 6 2.6725 -6.5341 1.1953 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 2.3134 -6.1292 -2.1342 28 1 3.9207 -7.9946 -2.1351 29 1 5.4239 -9.4492 0.9819 30 1 5.7206 -8.5897 -1.9867 31 1 7.0398 -8.8701 -0.7691 32 1 6.5530 -11.2696 -0.6598 33 1 5.8916 -11.0100 -2.3320 34 1 4.1875 -11.3126 -0.0202 35 1 3.7099 -10.3108 -1.4580 36 1 3.9221 -7.9954 2.1299 37 1 2.3219 -6.1239 2.1308 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351114035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:18 Heat of formation + Delta-G solvation = -26.002101 kcal Electronic energy + Delta-G solvation = -18247.652332 eV Core-core repulsion = 15374.900125 eV Total energy + Delta-G solvation = -2872.752207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03767 -40.06968 -38.54493 -35.99418 -33.68885 -33.14500 -31.77007 -29.45165 -26.90336 -26.43987 -25.18173 -23.68988 -22.23834 -20.96343 -20.00372 -19.87301 -17.73026 -17.59326 -16.69349 -16.51363 -16.13532 -15.92680 -15.61848 -15.18506 -14.82671 -14.48628 -14.22552 -13.91218 -13.56634 -13.31676 -13.29568 -13.04794 -12.74173 -12.62403 -12.46244 -12.32548 -12.10989 -11.89134 -11.52223 -11.38026 -11.24630 -11.02108 -10.41955 -10.03523 -9.73885 -9.29445 -8.47865 -5.97321 0.46913 0.58089 1.38422 1.40177 1.51453 2.03989 2.28997 2.79397 3.18961 3.41432 3.74295 3.75489 3.90326 3.93245 4.02919 4.15139 4.19334 4.29658 4.46526 4.51349 4.62401 4.69926 4.77010 4.84542 4.90845 4.94932 5.12205 5.13346 5.19138 5.22205 5.34051 5.39339 5.53430 5.60330 5.79297 5.82705 5.97689 6.19800 6.57768 7.10391 7.54183 8.10050 8.69187 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.045598 B = 0.003587 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.920583 B = 7804.372764 C = 8043.719051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.442 3.558 11 O -0.629 6.629 12 C -0.086 4.086 13 C -0.073 4.073 14 C -0.122 4.122 15 C -0.120 4.120 16 C -0.082 4.082 17 C -0.076 4.076 18 C -0.142 4.142 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.122 4.122 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -19.342 -0.986 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.230 3.770 11 O -0.516 6.516 12 C -0.126 4.126 13 C -0.073 4.073 14 C -0.140 4.140 15 C -0.138 4.138 16 C -0.082 4.082 17 C -0.094 4.094 18 C -0.179 4.179 19 C -0.170 4.170 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.140 4.140 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.276 -19.177 -0.988 19.914 hybrid contribution -0.322 1.325 0.072 1.365 sum 4.955 -17.853 -0.916 18.550 Atomic orbital electron populations 1.69668 1.06823 1.29430 1.50160 1.26044 0.96558 1.02399 0.96170 0.84999 0.77805 0.76634 0.78968 1.19702 1.19287 1.19700 1.19643 0.92682 0.84141 1.50193 0.90471 1.41961 1.09348 1.04659 1.64960 1.20809 0.88108 0.85957 0.82110 1.90503 1.16037 1.88146 1.56953 1.20540 0.97240 0.89120 1.05725 1.19479 0.98310 0.95322 0.94213 1.21147 0.98360 0.97061 0.97424 1.21088 0.97438 0.96702 0.98565 1.19976 0.97923 0.97594 0.92739 1.21620 0.94953 0.92879 0.99921 1.23083 0.98751 0.97729 0.98329 1.22811 0.96777 0.95477 1.01924 1.22964 0.97361 0.96376 0.99770 1.21219 0.97659 0.96706 0.98625 1.21154 0.98364 0.97012 0.97448 0.91212 0.76863 0.87330 0.87329 0.86127 0.84586 0.87883 0.90334 0.91380 0.89053 0.90658 0.90511 0.90295 0.84396 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.05 21.66 0.28 -49.98 16 2 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 3 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.57 9.68 84.04 0.81 -18.76 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -30.15 5.29 -306.98 -1.62 -31.78 16 10 C 0.44 21.79 7.78 87.66 0.68 22.47 16 11 O -0.63 -36.25 15.61 -3.07 -0.05 -36.30 16 12 C -0.09 -3.12 5.83 29.10 0.17 -2.95 16 13 C -0.07 -2.56 4.37 -19.87 -0.09 -2.65 16 14 C -0.12 -3.97 9.70 22.27 0.22 -3.76 16 15 C -0.12 -3.36 8.61 22.27 0.19 -3.17 16 16 C -0.08 -2.16 5.29 -19.87 -0.11 -2.27 16 17 C -0.08 -1.48 3.98 -11.01 -0.04 -1.52 16 18 C -0.14 -2.56 7.46 31.12 0.23 -2.33 16 19 C -0.13 -1.83 8.08 31.12 0.25 -1.57 16 20 C -0.13 -2.02 7.55 31.12 0.23 -1.78 16 21 C -0.12 -3.50 9.71 22.27 0.22 -3.28 16 22 C -0.12 -3.98 9.70 22.27 0.22 -3.77 16 23 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 24 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 25 H 0.11 3.40 8.09 -2.39 -0.02 3.38 16 26 H 0.11 3.40 8.08 -2.39 -0.02 3.38 16 27 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.14 3.13 6.66 -2.91 -0.02 3.11 16 29 H 0.10 1.81 8.09 -2.39 -0.02 1.79 16 30 H 0.08 1.52 6.31 -2.39 -0.02 1.51 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.32 7.72 -2.39 -0.02 1.31 16 36 H 0.14 3.12 8.05 -2.91 -0.02 3.10 16 37 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -68.57 313.11 4.43 -64.14 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.34 Total: 33.92 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.45 Total: -25.51 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.34 Total: -81.76 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.05 Total: -36.30 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.57 4.43 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351114035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.136 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds