Wall clock time and date at job start Sun Mar 29 2020 23:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99582 * 2 1 4 4 O 1.20823 * 120.00648 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99770 * 180.02562 * 3 2 1 6 6 N 1.46900 * 110.43819 * 38.82203 * 5 3 2 7 7 C 1.46897 * 110.99720 * 55.33344 * 6 5 3 8 8 C 1.53002 * 109.46908 * 174.70058 * 7 6 5 9 9 H 1.09000 * 109.47769 * 59.99906 * 8 7 6 10 10 O 1.42906 * 109.47133 * 300.00084 * 8 7 6 11 11 C 1.50702 * 109.47005 * 180.02562 * 8 7 6 12 12 H 1.07992 * 119.99956 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99786 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00232 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99774 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47081 * 89.99972 * 15 13 11 17 17 H 1.48496 * 109.47110 * 209.99965 * 15 13 11 18 18 H 1.48492 * 109.47300 * 329.99858 * 15 13 11 19 19 C 1.54982 * 110.57627 * 161.38636 * 5 3 2 20 20 C 1.54988 * 102.01732 * 139.41773 * 19 5 3 21 21 O 1.44377 * 103.63208 * 323.17760 * 20 19 5 22 22 C 1.43746 * 106.97474 * 39.97650 * 21 20 19 23 23 H 1.09004 * 109.47328 * 300.00284 * 1 2 3 24 24 H 1.09005 * 109.47100 * 60.00175 * 1 2 3 25 25 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.00904 * 110.99882 * 291.37827 * 6 5 3 27 27 H 1.09001 * 109.47518 * 294.69657 * 7 6 5 28 28 H 1.08996 * 109.47134 * 54.70411 * 7 6 5 29 29 H 0.96709 * 113.99835 * 300.00391 * 10 8 7 30 30 H 0.96997 * 120.00262 * 180.02562 * 14 13 11 31 31 H 1.09006 * 110.84066 * 21.28872 * 19 5 3 32 32 H 1.09001 * 111.04629 * 257.64045 * 19 5 3 33 33 H 1.09001 * 110.62332 * 204.59409 * 20 19 5 34 34 H 1.09000 * 110.61668 * 81.75510 * 20 19 5 35 35 H 1.09006 * 109.87787 * 92.91476 * 22 21 20 36 36 H 1.08999 * 109.87722 * 213.91130 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1344 0.2310 -0.8640 7 6 3.5816 0.3131 -2.2225 8 6 4.2906 -0.6999 -3.1236 9 1 4.1392 -1.7050 -2.7299 10 8 5.6891 -0.4083 -3.1599 11 6 3.7240 -0.6153 -4.5175 12 1 2.9373 0.0907 -4.7386 13 6 4.2108 -1.4385 -5.5107 14 7 5.1699 -2.2972 -5.2418 15 14 3.5090 -1.3331 -7.2386 16 1 4.2816 -0.3397 -8.0269 17 1 3.6010 -2.6633 -7.8923 18 1 2.0865 -0.9125 -7.1703 19 6 4.0380 2.6768 -0.4636 20 6 5.2166 2.9563 0.5033 21 8 4.7762 2.3807 1.7520 22 6 4.1137 1.1453 1.4341 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.9868 -0.6854 -0.4682 27 1 2.5149 0.0907 -2.1949 28 1 3.7332 1.3181 -2.6163 29 1 5.8986 0.4723 -3.5004 30 1 5.5127 -2.8761 -5.9405 31 1 3.2460 3.4146 -0.3350 32 1 4.3808 2.6525 -1.4980 33 1 5.3788 4.0288 0.6110 34 1 6.1247 2.4653 0.1535 35 1 4.8236 0.3198 1.4867 36 1 3.2941 0.9741 2.1319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351165038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:46 Heat of formation + Delta-G solvation = -172.235056 kcal Electronic energy + Delta-G solvation = -20621.913477 eV Core-core repulsion = 17299.678119 eV Total energy + Delta-G solvation = -3322.235358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02235 -38.99128 -36.49892 -36.41849 -34.48312 -32.12391 -30.62150 -29.65949 -27.75205 -27.20238 -24.18062 -23.64248 -22.51295 -20.64720 -19.73438 -17.83868 -17.11857 -16.87901 -16.68134 -16.08233 -15.58379 -15.08843 -14.63427 -14.46727 -14.08480 -13.78336 -13.45698 -13.34012 -12.93064 -12.72821 -12.22006 -12.11552 -11.66677 -11.51122 -11.33283 -10.99180 -10.96036 -10.91951 -10.82103 -10.78650 -10.51038 -10.10382 -9.69166 -9.09209 -8.62525 -8.31081 -8.02793 -6.04848 -4.23687 2.14340 2.63872 3.24669 3.31993 3.34238 3.86165 4.15892 4.32499 4.41488 4.75612 4.88011 5.06907 5.14898 5.15888 5.23043 5.33502 5.45170 5.50591 5.61640 5.72833 5.88372 5.96279 6.03658 6.11061 6.34976 6.39465 6.70140 6.74210 7.17307 7.51992 7.70342 7.72935 7.80602 8.13432 8.79568 9.40563 9.56542 10.99222 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.006130 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.776466 B = 4566.379024 C = 5238.640477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.443 3.557 4 O -0.508 6.508 5 C 0.092 3.908 6 N -0.645 5.645 7 C 0.026 3.974 8 C 0.240 3.760 9 H 0.055 0.945 10 O -0.553 6.553 11 C -0.575 4.575 12 H 0.054 0.946 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.889 3.111 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.138 4.138 20 C 0.055 3.945 21 O -0.375 6.375 22 C 0.069 3.931 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.351 0.649 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.343 0.657 30 H 0.261 0.739 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 6.110 11.144 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.283 3.717 4 O -0.394 6.394 5 C -0.003 4.003 6 N -0.277 5.277 7 C -0.103 4.103 8 C 0.182 3.818 9 H 0.073 0.927 10 O -0.355 6.355 11 C -0.614 4.614 12 H 0.072 0.928 13 C -0.125 4.125 14 N -0.492 5.492 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.176 4.176 20 C -0.021 4.021 21 O -0.293 6.293 22 C -0.009 4.009 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.171 0.829 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.882 6.074 11.389 13.478 hybrid contribution -1.861 0.128 -1.429 2.350 sum -5.744 6.201 9.959 13.063 Atomic orbital electron populations 1.23263 0.76496 1.03801 1.02302 1.86558 1.23454 1.33357 1.83689 1.25118 0.93269 0.81517 0.71812 1.90608 1.67191 1.36453 1.45119 1.22599 0.83734 0.97231 0.96714 1.60792 1.58183 1.06111 1.02647 1.23134 0.97078 1.02608 0.87432 1.19250 0.78987 0.92214 0.91369 0.92723 1.86574 1.25840 1.36063 1.87011 1.21595 1.22105 1.22414 0.95276 0.92804 1.25008 0.94258 0.94476 0.98799 1.70073 1.25175 1.20916 1.33042 0.86673 0.79517 0.77509 0.84676 1.20464 1.21055 1.19933 1.23303 0.99209 0.93061 1.02016 1.23547 0.96688 0.99149 0.82714 1.88850 1.75600 1.35822 1.29048 1.23106 0.97075 0.88943 0.91768 0.92151 0.91854 0.87955 0.82943 0.95213 0.91652 0.81397 0.92919 0.88853 0.88148 0.88775 0.90739 0.89496 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.35 -5.31 9.54 -39.26 -0.37 -5.68 16 3 C 0.44 7.10 5.40 36.01 0.19 7.30 16 4 O -0.51 -9.04 15.28 -18.75 -0.29 -9.33 16 5 C 0.09 1.37 0.84 -131.13 -0.11 1.25 16 6 N -0.64 -10.71 5.76 -99.49 -0.57 -11.28 16 7 C 0.03 0.51 4.62 -3.82 -0.02 0.49 16 8 C 0.24 5.83 3.08 -27.88 -0.09 5.75 16 9 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 10 O -0.55 -13.75 12.59 -35.23 -0.44 -14.19 16 11 C -0.58 -15.43 8.76 -34.44 -0.30 -15.73 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 14 N -0.86 -24.85 12.84 55.43 0.71 -24.14 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.14 -1.94 6.08 -24.63 -0.15 -2.09 16 20 C 0.06 0.69 7.71 38.21 0.29 0.98 16 21 O -0.37 -5.29 11.52 -35.23 -0.41 -5.69 16 22 C 0.07 0.91 7.10 37.73 0.27 1.18 16 23 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.35 5.69 8.66 -39.29 -0.34 5.35 16 27 H 0.03 0.61 6.69 -51.93 -0.35 0.26 16 28 H 0.07 1.27 6.34 -51.93 -0.33 0.95 16 29 H 0.34 7.65 9.04 45.56 0.41 8.06 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.09 1.36 6.81 -51.93 -0.35 1.01 16 32 H 0.10 1.45 6.37 -51.93 -0.33 1.12 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.08 7.91 -51.93 -0.41 0.67 16 36 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -31.48 302.31 -4.95 -36.43 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.18 Total: 10.76 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 1.06 Total: 2.74 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.14 Total: -35.42 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.51 Total: -34.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.48 -4.95 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351165038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.801 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds