Wall clock time and date at job start Sun Mar 29 2020 23:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99582 * 2 1 4 4 O 1.20823 * 120.00648 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99770 * 180.02562 * 3 2 1 6 6 N 1.46900 * 110.43819 * 38.82203 * 5 3 2 7 7 C 1.46897 * 110.99720 * 55.33344 * 6 5 3 8 8 C 1.53002 * 109.46908 * 174.70058 * 7 6 5 9 9 H 1.09000 * 109.47769 * 59.99906 * 8 7 6 10 10 O 1.42906 * 109.47133 * 300.00084 * 8 7 6 11 11 C 1.50702 * 109.47005 * 180.02562 * 8 7 6 12 12 H 1.07992 * 119.99956 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99786 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00232 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99774 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47081 * 89.99972 * 15 13 11 17 17 H 1.48496 * 109.47110 * 209.99965 * 15 13 11 18 18 H 1.48492 * 109.47300 * 329.99858 * 15 13 11 19 19 C 1.54982 * 110.57627 * 161.38636 * 5 3 2 20 20 C 1.54988 * 102.01732 * 139.41773 * 19 5 3 21 21 O 1.44377 * 103.63208 * 323.17760 * 20 19 5 22 22 C 1.43746 * 106.97474 * 39.97650 * 21 20 19 23 23 H 1.09004 * 109.47328 * 300.00284 * 1 2 3 24 24 H 1.09005 * 109.47100 * 60.00175 * 1 2 3 25 25 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.00904 * 110.99882 * 291.37827 * 6 5 3 27 27 H 1.09001 * 109.47518 * 294.69657 * 7 6 5 28 28 H 1.08996 * 109.47134 * 54.70411 * 7 6 5 29 29 H 0.96709 * 113.99835 * 300.00391 * 10 8 7 30 30 H 0.96997 * 120.00262 * 180.02562 * 14 13 11 31 31 H 1.09006 * 110.84066 * 21.28872 * 19 5 3 32 32 H 1.09001 * 111.04629 * 257.64045 * 19 5 3 33 33 H 1.09001 * 110.62332 * 204.59409 * 20 19 5 34 34 H 1.09000 * 110.61668 * 81.75510 * 20 19 5 35 35 H 1.09006 * 109.87787 * 92.91476 * 22 21 20 36 36 H 1.08999 * 109.87722 * 213.91130 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1344 0.2310 -0.8640 7 6 3.5816 0.3131 -2.2225 8 6 4.2906 -0.6999 -3.1236 9 1 4.1392 -1.7050 -2.7299 10 8 5.6891 -0.4083 -3.1599 11 6 3.7240 -0.6153 -4.5175 12 1 2.9373 0.0907 -4.7386 13 6 4.2108 -1.4385 -5.5107 14 7 5.1699 -2.2972 -5.2418 15 14 3.5090 -1.3331 -7.2386 16 1 4.2816 -0.3397 -8.0269 17 1 3.6010 -2.6633 -7.8923 18 1 2.0865 -0.9125 -7.1703 19 6 4.0380 2.6768 -0.4636 20 6 5.2166 2.9563 0.5033 21 8 4.7762 2.3807 1.7520 22 6 4.1137 1.1453 1.4341 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.9868 -0.6854 -0.4682 27 1 2.5149 0.0907 -2.1949 28 1 3.7332 1.3181 -2.6163 29 1 5.8986 0.4723 -3.5004 30 1 5.5127 -2.8761 -5.9405 31 1 3.2460 3.4146 -0.3350 32 1 4.3808 2.6525 -1.4980 33 1 5.3788 4.0288 0.6110 34 1 6.1247 2.4653 0.1535 35 1 4.8236 0.3198 1.4867 36 1 3.2941 0.9741 2.1319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351165038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:46 Heat of formation + Delta-G solvation = -197.879788 kcal Electronic energy + Delta-G solvation = -20623.025516 eV Core-core repulsion = 17299.678119 eV Total energy + Delta-G solvation = -3323.347397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23312 -40.11828 -38.18822 -37.65428 -36.03255 -34.20957 -31.97232 -30.87673 -29.08305 -28.61052 -25.95978 -24.77792 -23.69526 -22.37098 -20.96841 -19.25318 -18.71900 -18.30979 -17.86916 -17.29741 -16.68676 -16.64340 -16.41228 -15.91065 -15.73341 -15.12577 -14.91237 -14.68907 -14.41023 -13.93032 -13.46701 -13.35017 -13.16615 -12.99356 -12.86320 -12.77704 -12.49341 -12.38810 -12.08237 -12.00359 -11.95450 -11.83469 -11.04144 -10.73406 -10.71290 -10.12980 -9.58654 -8.13624 -6.39295 0.89655 1.40338 1.41279 1.51149 1.52233 2.37523 2.79965 2.93748 3.13007 3.18844 3.63805 3.77788 4.07870 4.17939 4.21704 4.25018 4.28088 4.35475 4.41624 4.54455 4.57773 4.64725 4.77988 4.81444 4.95941 5.03438 5.19474 5.57683 5.60586 5.73616 5.82874 6.07782 6.23632 6.49900 6.72634 7.35147 7.62947 8.90550 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.006130 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.776466 B = 4566.379024 C = 5238.640477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.442 3.558 4 O -0.529 6.529 5 C 0.090 3.910 6 N -0.640 5.640 7 C 0.049 3.951 8 C 0.242 3.758 9 H 0.024 0.976 10 O -0.566 6.566 11 C -0.589 4.589 12 H 0.054 0.946 13 C 0.030 3.970 14 N -0.895 5.895 15 Si 0.956 3.044 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.138 4.138 20 C 0.058 3.942 21 O -0.385 6.385 22 C 0.072 3.928 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.130 0.870 26 H 0.353 0.647 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.354 0.646 30 H 0.262 0.738 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 6.747 11.337 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.283 3.717 4 O -0.417 6.417 5 C -0.004 4.004 6 N -0.273 5.273 7 C -0.080 4.080 8 C 0.184 3.816 9 H 0.042 0.958 10 O -0.369 6.369 11 C -0.628 4.628 12 H 0.072 0.928 13 C -0.173 4.173 14 N -0.532 5.532 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.176 4.176 20 C -0.017 4.017 21 O -0.304 6.304 22 C -0.006 4.006 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.173 0.827 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.198 0.802 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.314 6.716 11.593 14.075 hybrid contribution -1.758 -0.082 -1.441 2.275 sum -6.072 6.634 10.151 13.562 Atomic orbital electron populations 1.23563 0.74746 1.05792 1.02480 1.86546 1.25265 1.32800 1.83265 1.25256 0.93626 0.81514 0.71254 1.90596 1.67700 1.37113 1.46287 1.22700 0.83306 0.96920 0.97481 1.60688 1.58080 1.06879 1.01650 1.22645 0.95861 1.01056 0.88395 1.19058 0.79145 0.92048 0.91363 0.95803 1.86517 1.26139 1.37051 1.87195 1.21978 1.21983 1.22140 0.96653 0.92754 1.25814 0.94523 0.94083 1.02840 1.70196 1.26692 1.21923 1.34341 0.85622 0.78961 0.77566 0.79800 1.19785 1.20787 1.19296 1.23307 0.99741 0.92389 1.02187 1.23650 0.95799 1.00643 0.81644 1.88843 1.75702 1.36077 1.29773 1.23145 0.97629 0.89117 0.90666 0.91005 0.92674 0.85149 0.82658 0.96039 0.91328 0.80210 0.92907 0.89339 0.88673 0.86342 0.90528 0.88538 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -10.48 9.54 -51.44 -0.49 -10.97 16 3 C 0.44 13.76 5.40 71.24 0.38 14.15 16 4 O -0.53 -18.41 15.28 21.97 0.34 -18.08 16 5 C 0.09 2.58 0.84 3.83 0.00 2.58 16 6 N -0.64 -20.79 5.76 -468.68 -2.70 -23.48 16 7 C 0.05 1.92 4.62 86.30 0.40 2.32 16 8 C 0.24 11.85 3.08 29.85 0.09 11.94 16 9 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 10 O -0.57 -28.18 12.59 -148.98 -1.88 -30.06 16 11 C -0.59 -31.57 8.76 25.60 0.22 -31.35 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 13 C 0.03 1.67 5.40 84.66 0.46 2.12 16 14 N -0.89 -52.27 12.84 21.45 0.28 -52.00 16 15 Si 0.96 42.57 29.54 68.60 2.03 44.59 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C -0.14 -3.72 6.08 31.95 0.19 -3.52 16 20 C 0.06 1.34 7.71 72.66 0.56 1.90 16 21 O -0.39 -10.08 11.52 -148.98 -1.72 -11.80 16 22 C 0.07 1.78 7.10 72.35 0.51 2.29 16 23 H 0.07 1.42 8.13 -2.38 -0.02 1.40 16 24 H 0.05 1.31 8.13 -2.38 -0.02 1.29 16 25 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.35 11.24 8.66 -89.69 -0.78 10.46 16 27 H 0.02 0.87 6.69 -2.39 -0.02 0.86 16 28 H 0.07 2.63 6.34 -2.39 -0.02 2.62 16 29 H 0.35 15.68 9.04 -74.05 -0.67 15.01 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 31 H 0.09 2.48 6.81 -2.38 -0.02 2.47 16 32 H 0.09 2.64 6.37 -2.39 -0.02 2.63 16 33 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 2.21 7.91 -2.38 -0.02 2.19 16 36 H 0.09 2.11 7.69 -2.39 -0.02 2.09 16 Total: -1.00 -66.00 302.31 -0.45 -66.45 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.33 Total: 31.11 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.02 Total: 4.23 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -2.42 Total: -75.48 kcal Atomic # 8 Polarization: -67.16 SS G_CDS: -3.75 Total: -70.91 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.00 -0.45 -66.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351165038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.428 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds