Wall clock time and date at job start Sun Mar 29 2020 23:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99918 * 2 1 4 4 C 1.50697 * 110.27978 * 300.89422 * 3 2 1 5 5 O 1.20823 * 120.00763 * 146.73680 * 4 3 2 6 6 O 1.34233 * 119.99712 * 326.73826 * 4 3 2 7 7 C 1.54602 * 110.30943 * 178.69813 * 3 2 1 8 8 C 1.54938 * 102.92050 * 263.04444 * 7 3 2 9 9 N 1.48535 * 103.22664 * 322.58359 * 8 7 3 10 10 C 1.46903 * 110.99931 * 159.72099 * 9 8 7 11 11 C 1.53004 * 109.47087 * 52.60537 * 10 9 8 12 12 H 1.09008 * 109.46715 * 59.99687 * 11 10 9 13 13 O 1.42901 * 109.46896 * 300.00007 * 11 10 9 14 14 C 1.50696 * 109.47353 * 179.97438 * 11 10 9 15 15 H 1.08000 * 119.99976 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00309 * 179.72798 * 14 11 10 17 17 N 1.31506 * 120.00268 * 180.27845 * 16 14 11 18 18 Si 1.86798 * 119.99733 * 0.26879 * 16 14 11 19 19 H 1.48506 * 109.47063 * 90.00692 * 18 16 14 20 20 H 1.48499 * 109.47174 * 210.00157 * 18 16 14 21 21 H 1.48498 * 109.47695 * 330.00586 * 18 16 14 22 22 C 1.47898 * 105.82070 * 39.20996 * 9 8 7 23 23 H 1.09003 * 109.46914 * 65.25080 * 1 2 3 24 24 H 1.08997 * 109.47234 * 185.25101 * 1 2 3 25 25 H 1.08998 * 109.47321 * 305.25245 * 1 2 3 26 26 H 0.96691 * 117.00263 * 179.97438 * 6 4 3 27 27 H 1.08996 * 110.72230 * 21.39956 * 7 3 2 28 28 H 1.08997 * 110.72542 * 144.50995 * 7 3 2 29 29 H 1.09001 * 110.66528 * 204.15272 * 8 7 3 30 30 H 1.08997 * 110.67164 * 81.02138 * 8 7 3 31 31 H 1.08993 * 109.47147 * 292.60776 * 10 9 8 32 32 H 1.09001 * 109.47110 * 172.59947 * 10 9 8 33 33 H 0.96699 * 113.99887 * 299.99833 * 13 11 10 34 34 H 0.96996 * 120.00473 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.91855 * 94.02139 * 22 9 8 36 36 H 1.09005 * 109.91894 * 215.12059 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5596 2.0778 -1.2130 5 8 1.4050 3.2742 -1.1445 6 8 1.3299 1.4366 -2.3697 7 6 3.5527 1.2061 0.0329 8 6 3.8790 1.3802 1.5375 9 7 2.8889 2.3930 1.9851 10 6 2.7111 2.3472 3.4426 11 6 4.0761 2.4480 4.1263 12 1 4.5534 3.3877 3.8477 13 8 4.8982 1.3550 3.7121 14 6 3.8937 2.4017 5.6215 15 1 2.9032 2.3099 6.0421 16 6 4.9917 2.4713 6.4525 17 7 4.8330 2.4254 7.7571 18 14 6.7049 2.6307 5.7250 19 1 7.0440 4.0679 5.5674 20 1 7.6893 1.9864 6.6312 21 1 6.7434 1.9646 4.3984 22 6 1.6283 2.0605 1.2867 23 1 -0.3633 0.4302 -0.9333 24 1 -0.3633 -1.0233 0.0940 25 1 -0.3634 0.5931 0.8392 26 1 1.0420 1.9743 -3.1200 27 1 3.8840 0.2307 -0.3232 28 1 4.0033 2.0041 -0.5571 29 1 4.8954 1.7510 1.6703 30 1 3.7378 0.4414 2.0730 31 1 2.2339 1.4077 3.7210 32 1 2.0841 3.1809 3.7585 33 1 4.5345 0.4855 3.9280 34 1 5.6054 2.4740 8.3417 35 1 1.0092 1.4253 1.9201 36 1 1.0893 2.9748 1.0380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606704141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:21 Heat of formation + Delta-G solvation = -161.016503 kcal Electronic energy + Delta-G solvation = -20651.358656 eV Core-core repulsion = 17329.609771 eV Total energy + Delta-G solvation = -3321.748885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09748 -38.94970 -37.37238 -36.38834 -35.30018 -32.29071 -31.70346 -28.70935 -28.49414 -26.77721 -25.04019 -23.35086 -21.57351 -20.32401 -20.11139 -18.65773 -17.54944 -17.41325 -16.33805 -15.59540 -15.32733 -14.98169 -14.75667 -14.68050 -14.48475 -13.99073 -13.83272 -13.28263 -12.83005 -12.67046 -12.19361 -12.16481 -11.84635 -11.68720 -11.56800 -11.34890 -11.05520 -10.90167 -10.77996 -10.62465 -10.38557 -9.96505 -9.86140 -9.05195 -8.62974 -8.21385 -8.01122 -6.13967 -4.25728 1.90939 2.69014 3.37369 3.40409 3.49475 3.74119 4.34814 4.36771 4.53024 4.59402 4.91532 5.09325 5.13915 5.18837 5.35588 5.39095 5.49782 5.52654 5.71927 5.79343 5.86053 6.00684 6.06384 6.23057 6.26220 6.46595 6.68693 6.75496 7.16694 7.23735 7.43775 7.65077 7.67720 8.25647 8.79513 8.96067 9.50198 10.96610 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.040073 B = 0.005203 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.555741 B = 5379.835131 C = 5535.203776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.355 6.355 3 C 0.119 3.881 4 C 0.464 3.536 5 O -0.497 6.497 6 O -0.508 6.508 7 C -0.113 4.113 8 C 0.054 3.946 9 N -0.510 5.510 10 C 0.031 3.969 11 C 0.197 3.803 12 H 0.064 0.936 13 O -0.579 6.579 14 C -0.565 4.565 15 H 0.071 0.929 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.874 3.126 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.216 1.216 22 C 0.020 3.980 23 H 0.045 0.955 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.405 0.595 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.353 0.647 34 H 0.265 0.735 35 H 0.062 0.938 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -4.853 -18.264 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.273 6.273 3 C 0.078 3.922 4 C 0.304 3.696 5 O -0.384 6.384 6 O -0.319 6.319 7 C -0.151 4.151 8 C -0.073 4.073 9 N -0.234 5.234 10 C -0.096 4.096 11 C 0.139 3.861 12 H 0.082 0.918 13 O -0.385 6.385 14 C -0.602 4.602 15 H 0.089 0.911 16 C -0.120 4.120 17 N -0.530 5.530 18 Si 0.700 3.300 19 H -0.214 1.214 20 H -0.224 1.224 21 H -0.138 1.138 22 C -0.109 4.109 23 H 0.064 0.936 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.263 0.737 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.200 0.800 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.183 -3.912 -18.075 19.499 hybrid contribution -0.444 -0.425 -0.141 0.630 sum -6.627 -4.336 -18.216 19.863 Atomic orbital electron populations 1.22941 0.80765 1.03590 1.00466 1.88071 1.20105 1.24745 1.94367 1.22417 0.97275 0.83152 0.89395 1.24240 0.73404 0.87152 0.84777 1.90747 1.46927 1.16136 1.84586 1.84665 1.79749 1.45953 1.21521 1.22792 0.88143 1.03620 1.00507 1.23442 0.98886 0.94830 0.90116 1.64967 1.04707 1.46188 1.07581 1.23009 1.01337 1.00429 0.84845 1.19781 0.85821 0.87355 0.93110 0.91793 1.86758 1.51664 1.16903 1.83184 1.21446 0.95581 1.53859 0.89339 0.91080 1.24992 1.00157 0.92474 0.94426 1.69951 1.31316 1.48586 1.03150 0.86988 0.82602 0.78309 0.82082 1.21407 1.22417 1.13843 1.23512 0.95121 0.99830 0.92411 0.93626 0.88738 0.93304 0.73704 0.88846 0.89471 0.87287 0.92651 0.94886 0.90476 0.79965 0.92555 0.92002 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.30 101.05 1.04 1.23 16 2 O -0.35 -4.59 10.15 -48.66 -0.49 -5.08 16 3 C 0.12 1.62 1.01 -90.41 -0.09 1.53 16 4 C 0.46 6.01 6.07 36.00 0.22 6.23 16 5 O -0.50 -7.75 16.36 -18.75 -0.31 -8.05 16 6 O -0.51 -4.98 12.35 -44.33 -0.55 -5.53 16 7 C -0.11 -1.51 6.35 -24.87 -0.16 -1.66 16 8 C 0.05 0.86 4.65 -1.90 -0.01 0.85 16 9 N -0.51 -8.85 5.40 -230.45 -1.24 -10.10 16 10 C 0.03 0.61 4.82 -3.82 -0.02 0.59 16 11 C 0.20 4.44 2.40 -27.88 -0.07 4.38 16 12 H 0.06 1.54 7.58 -51.92 -0.39 1.14 16 13 O -0.58 -12.07 6.39 -35.23 -0.23 -12.30 16 14 C -0.56 -15.35 9.34 -34.44 -0.32 -15.67 16 15 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 16 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 17 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 18 Si 0.87 21.52 26.99 -169.99 -4.59 16.94 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.22 -5.10 5.30 56.52 0.30 -4.80 16 22 C 0.02 0.30 5.37 -2.75 -0.01 0.28 16 23 H 0.05 0.42 6.77 -51.93 -0.35 0.07 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.48 6.49 -51.93 -0.34 0.14 16 26 H 0.40 2.09 9.10 45.56 0.41 2.50 16 27 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16 29 H 0.11 1.87 6.84 -51.93 -0.35 1.51 16 30 H 0.06 0.87 6.81 -51.93 -0.35 0.52 16 31 H 0.03 0.63 7.81 -51.93 -0.41 0.23 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.35 6.64 8.33 45.56 0.38 7.02 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.06 0.90 6.13 -51.93 -0.32 0.58 16 36 H 0.09 1.49 6.76 -51.93 -0.35 1.13 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -32.76 288.02 -5.21 -37.97 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.40 Total: 8.04 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.48 Total: 0.04 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.47 Total: -36.36 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.57 Total: -30.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.59 Total: 16.94 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.76 -5.21 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606704141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.049 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds