Wall clock time and date at job start Sun Mar 29 2020 23:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99918 * 2 1 4 4 C 1.50697 * 110.27978 * 300.89422 * 3 2 1 5 5 O 1.20823 * 120.00763 * 146.73680 * 4 3 2 6 6 O 1.34233 * 119.99712 * 326.73826 * 4 3 2 7 7 C 1.54602 * 110.30943 * 178.69813 * 3 2 1 8 8 C 1.54938 * 102.92050 * 263.04444 * 7 3 2 9 9 N 1.48535 * 103.22664 * 322.58359 * 8 7 3 10 10 C 1.46903 * 110.99931 * 159.72099 * 9 8 7 11 11 C 1.53004 * 109.47087 * 52.60537 * 10 9 8 12 12 H 1.09008 * 109.46715 * 59.99687 * 11 10 9 13 13 O 1.42901 * 109.46896 * 300.00007 * 11 10 9 14 14 C 1.50696 * 109.47353 * 179.97438 * 11 10 9 15 15 H 1.08000 * 119.99976 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00309 * 179.72798 * 14 11 10 17 17 N 1.31506 * 120.00268 * 180.27845 * 16 14 11 18 18 Si 1.86798 * 119.99733 * 0.26879 * 16 14 11 19 19 H 1.48506 * 109.47063 * 90.00692 * 18 16 14 20 20 H 1.48499 * 109.47174 * 210.00157 * 18 16 14 21 21 H 1.48498 * 109.47695 * 330.00586 * 18 16 14 22 22 C 1.47898 * 105.82070 * 39.20996 * 9 8 7 23 23 H 1.09003 * 109.46914 * 65.25080 * 1 2 3 24 24 H 1.08997 * 109.47234 * 185.25101 * 1 2 3 25 25 H 1.08998 * 109.47321 * 305.25245 * 1 2 3 26 26 H 0.96691 * 117.00263 * 179.97438 * 6 4 3 27 27 H 1.08996 * 110.72230 * 21.39956 * 7 3 2 28 28 H 1.08997 * 110.72542 * 144.50995 * 7 3 2 29 29 H 1.09001 * 110.66528 * 204.15272 * 8 7 3 30 30 H 1.08997 * 110.67164 * 81.02138 * 8 7 3 31 31 H 1.08993 * 109.47147 * 292.60776 * 10 9 8 32 32 H 1.09001 * 109.47110 * 172.59947 * 10 9 8 33 33 H 0.96699 * 113.99887 * 299.99833 * 13 11 10 34 34 H 0.96996 * 120.00473 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.91855 * 94.02139 * 22 9 8 36 36 H 1.09005 * 109.91894 * 215.12059 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5596 2.0778 -1.2130 5 8 1.4050 3.2742 -1.1445 6 8 1.3299 1.4366 -2.3697 7 6 3.5527 1.2061 0.0329 8 6 3.8790 1.3802 1.5375 9 7 2.8889 2.3930 1.9851 10 6 2.7111 2.3472 3.4426 11 6 4.0761 2.4480 4.1263 12 1 4.5534 3.3877 3.8477 13 8 4.8982 1.3550 3.7121 14 6 3.8937 2.4017 5.6215 15 1 2.9032 2.3099 6.0421 16 6 4.9917 2.4713 6.4525 17 7 4.8330 2.4254 7.7571 18 14 6.7049 2.6307 5.7250 19 1 7.0440 4.0679 5.5674 20 1 7.6893 1.9864 6.6312 21 1 6.7434 1.9646 4.3984 22 6 1.6283 2.0605 1.2867 23 1 -0.3633 0.4302 -0.9333 24 1 -0.3633 -1.0233 0.0940 25 1 -0.3634 0.5931 0.8392 26 1 1.0420 1.9743 -3.1200 27 1 3.8840 0.2307 -0.3232 28 1 4.0033 2.0041 -0.5571 29 1 4.8954 1.7510 1.6703 30 1 3.7378 0.4414 2.0730 31 1 2.2339 1.4077 3.7210 32 1 2.0841 3.1809 3.7585 33 1 4.5345 0.4855 3.9280 34 1 5.6054 2.4740 8.3417 35 1 1.0092 1.4253 1.9201 36 1 1.0893 2.9748 1.0380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606704141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:21 Heat of formation + Delta-G solvation = -189.130163 kcal Electronic energy + Delta-G solvation = -20652.577756 eV Core-core repulsion = 17329.609771 eV Total energy + Delta-G solvation = -3322.967985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12737 -40.11206 -38.65424 -37.40974 -36.68993 -34.42288 -33.02511 -30.17122 -29.86135 -27.75140 -26.58383 -24.59751 -23.03600 -21.89483 -21.15622 -19.61870 -19.36751 -18.51569 -17.50403 -16.89028 -16.65793 -16.49517 -16.21740 -16.11797 -15.63602 -15.29852 -15.09189 -14.73292 -14.46854 -14.00942 -13.60695 -13.33145 -13.07591 -12.98502 -12.82520 -12.66348 -12.55920 -12.36474 -12.15757 -12.10349 -11.78539 -11.69330 -11.06972 -10.85563 -10.78820 -9.97254 -9.37547 -8.33780 -6.48937 0.91829 1.44229 1.49127 1.78118 1.79297 2.41976 2.46255 3.04505 3.06880 3.25980 3.49279 3.98834 4.02854 4.17830 4.24264 4.31559 4.36135 4.42635 4.43511 4.56065 4.65989 4.77499 4.83211 4.95656 5.03724 5.24355 5.39643 5.41108 5.54330 5.79330 5.95392 6.03696 6.11717 6.63640 6.85426 7.17307 7.33925 8.80376 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.040073 B = 0.005203 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.555741 B = 5379.835131 C = 5535.203776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.363 6.363 3 C 0.121 3.879 4 C 0.474 3.526 5 O -0.528 6.528 6 O -0.497 6.497 7 C -0.106 4.106 8 C 0.054 3.946 9 N -0.522 5.522 10 C 0.045 3.955 11 C 0.209 3.791 12 H 0.054 0.946 13 O -0.572 6.572 14 C -0.565 4.565 15 H 0.035 0.965 16 C 0.029 3.971 17 N -0.941 5.941 18 Si 0.940 3.060 19 H -0.290 1.290 20 H -0.300 1.300 21 H -0.196 1.196 22 C 0.021 3.979 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.047 0.953 26 H 0.427 0.573 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.366 0.634 34 H 0.267 0.733 35 H 0.067 0.933 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.702 -5.833 -20.779 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.281 6.281 3 C 0.079 3.921 4 C 0.316 3.684 5 O -0.418 6.418 6 O -0.311 6.311 7 C -0.143 4.143 8 C -0.073 4.073 9 N -0.247 5.247 10 C -0.083 4.083 11 C 0.151 3.849 12 H 0.072 0.928 13 O -0.379 6.379 14 C -0.603 4.603 15 H 0.054 0.946 16 C -0.170 4.170 17 N -0.580 5.580 18 Si 0.764 3.236 19 H -0.217 1.217 20 H -0.227 1.227 21 H -0.117 1.117 22 C -0.107 4.107 23 H 0.072 0.928 24 H 0.133 0.867 25 H 0.066 0.934 26 H 0.289 0.711 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.214 0.786 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.918 -4.915 -20.638 22.025 hybrid contribution -0.664 -0.169 0.594 0.907 sum -6.582 -5.084 -20.044 21.701 Atomic orbital electron populations 1.23163 0.79352 1.05087 1.00879 1.88063 1.21643 1.24022 1.94389 1.22232 0.97444 0.83429 0.89021 1.23978 0.72709 0.86412 0.85342 1.90748 1.48478 1.17374 1.85177 1.84599 1.79088 1.45952 1.21447 1.22740 0.88114 1.04867 0.98615 1.23382 0.97762 0.94197 0.91956 1.64872 1.06348 1.47439 1.05995 1.22677 0.99075 1.00139 0.86421 1.19445 0.87593 0.87521 0.90354 0.92809 1.86691 1.51337 1.17207 1.82708 1.21777 0.93917 1.52584 0.92050 0.94633 1.25858 1.04244 0.92348 0.94592 1.70079 1.32455 1.50796 1.04707 0.85981 0.77614 0.78029 0.81935 1.21692 1.22726 1.11741 1.23452 0.93992 0.99934 0.93314 0.92812 0.86663 0.93413 0.71078 0.86920 0.89111 0.88518 0.92519 0.94741 0.91462 0.78563 0.92475 0.91500 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.30 113.37 1.17 1.36 16 2 O -0.36 -8.36 10.15 -136.14 -1.38 -9.74 16 3 C 0.12 2.99 1.01 -10.66 -0.01 2.98 16 4 C 0.47 11.15 6.07 71.24 0.43 11.58 16 5 O -0.53 -15.59 16.36 21.97 0.36 -15.23 16 6 O -0.50 -8.15 12.35 -46.61 -0.58 -8.72 16 7 C -0.11 -2.54 6.35 31.80 0.20 -2.34 16 8 C 0.05 1.59 4.65 86.65 0.40 2.00 16 9 N -0.52 -17.49 5.40 -883.00 -4.76 -22.25 16 10 C 0.05 1.73 4.82 86.30 0.42 2.15 16 11 C 0.21 9.30 2.40 29.85 0.07 9.37 16 12 H 0.05 2.54 7.58 -2.38 -0.02 2.52 16 13 O -0.57 -22.75 6.39 -148.98 -0.95 -23.70 16 14 C -0.57 -31.14 9.34 25.60 0.24 -30.90 16 15 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 16 C 0.03 1.67 5.47 84.66 0.46 2.13 16 17 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 18 Si 0.94 44.44 26.99 68.60 1.85 46.29 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 21 H -0.20 -8.55 5.30 99.48 0.53 -8.02 16 22 C 0.02 0.62 5.37 86.45 0.46 1.08 16 23 H 0.05 0.85 6.77 -2.39 -0.02 0.83 16 24 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 0.84 6.49 -2.39 -0.02 0.82 16 26 H 0.43 2.97 9.10 -74.06 -0.67 2.30 16 27 H 0.11 2.29 8.08 -2.39 -0.02 2.27 16 28 H 0.09 2.13 7.86 -2.39 -0.02 2.11 16 29 H 0.10 3.11 6.84 -2.39 -0.02 3.09 16 30 H 0.06 1.65 6.81 -2.39 -0.02 1.63 16 31 H 0.03 1.30 7.81 -2.39 -0.02 1.28 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.37 12.99 8.33 -74.06 -0.62 12.37 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.07 1.85 6.13 -2.39 -0.01 1.83 16 36 H 0.09 2.65 6.76 -2.38 -0.02 2.64 16 Total: -1.00 -70.08 288.02 -1.67 -71.75 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.35 Total: 20.09 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 3.85 Total: -0.60 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -4.47 Total: -80.13 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -2.55 Total: -57.41 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.85 Total: 46.29 kcal Total: -70.08 -1.67 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606704141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.385 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds