Wall clock time and date at job start Mon Mar 30 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34450 * 124.92423 * 2 1 4 4 C 1.34810 * 110.89143 * 180.02562 * 3 2 1 5 5 C 1.38936 * 133.49194 * 180.02562 * 4 3 2 6 6 C 1.37846 * 119.81636 * 179.97438 * 5 4 3 7 7 C 1.38745 * 120.68467 * 0.02562 * 6 5 4 8 8 C 1.36734 * 120.42034 * 0.02562 * 7 6 5 9 9 C 1.39416 * 119.71356 * 359.67360 * 8 7 6 10 10 C 1.33999 * 124.92345 * 180.02562 * 2 1 3 11 11 C 1.50699 * 126.90693 * 359.95850 * 10 2 1 12 12 N 1.46906 * 109.47140 * 90.02565 * 11 10 2 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47465 * 324.99806 * 13 12 11 15 15 C 1.53000 * 109.47140 * 84.99977 * 13 12 11 16 16 C 1.50700 * 109.46579 * 205.00008 * 13 12 11 17 17 H 1.07990 * 120.00516 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99809 * 180.02562 * 16 13 12 19 19 N 1.31506 * 120.00230 * 179.97438 * 18 16 13 20 20 Si 1.86806 * 119.99867 * 359.97438 * 18 16 13 21 21 H 1.48500 * 109.47166 * 89.99781 * 20 18 16 22 22 H 1.48497 * 109.46953 * 210.00092 * 20 18 16 23 23 H 1.48507 * 109.46801 * 329.99835 * 20 18 16 24 24 H 1.08994 * 109.47434 * 269.97555 * 1 2 3 25 25 H 1.08999 * 109.47125 * 29.98202 * 1 2 3 26 26 H 1.08999 * 109.46522 * 149.97423 * 1 2 3 27 27 H 1.08004 * 120.09578 * 359.97339 * 5 4 3 28 28 H 1.08003 * 119.66014 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.79086 * 179.97438 * 7 6 5 30 30 H 1.08000 * 120.14389 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47247 * 330.02586 * 11 10 2 32 32 H 1.09001 * 109.47358 * 210.02012 * 11 10 2 33 33 H 1.00902 * 110.99923 * 303.95945 * 12 11 10 34 34 H 1.08994 * 109.46950 * 300.00235 * 15 13 12 35 35 H 1.09006 * 109.46704 * 59.99717 * 15 13 12 36 36 H 1.08997 * 109.47119 * 179.97438 * 15 13 12 37 37 H 0.97005 * 120.00357 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5846 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0004 6 6 5.9771 0.8805 -0.0006 7 6 6.0491 -0.5050 -0.0015 8 6 4.9075 -1.2577 -0.0028 9 6 3.6641 -0.6271 0.0037 10 6 2.2741 -1.0987 -0.0005 11 6 1.8042 -2.5305 -0.0003 12 7 1.6513 -2.9960 -1.3852 13 6 1.1928 -4.3910 -1.4242 14 1 1.6323 -4.9413 -0.5923 15 6 -0.3326 -4.4298 -1.3120 16 6 1.6172 -5.0230 -2.7247 17 1 2.1716 -4.4460 -3.4500 18 6 1.2967 -6.3377 -2.9892 19 7 1.6665 -6.8892 -4.1243 20 14 0.3370 -7.3357 -1.7351 21 1 -1.1178 -7.1885 -1.9938 22 1 0.7172 -8.7669 -1.8457 23 1 0.6490 -6.8448 -0.3686 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3632 -0.8898 -0.5142 27 1 4.7118 2.6006 0.0000 28 1 6.8866 1.4629 -0.0008 29 1 7.0130 -0.9922 -0.0021 30 1 4.9688 -2.3359 -0.0032 31 1 0.8454 -2.5982 0.5137 32 1 2.5366 -3.1533 0.5134 33 1 1.0259 -2.3955 -1.9015 34 1 -0.6395 -3.9726 -0.3714 35 1 -0.7722 -3.8795 -2.1440 36 1 -0.6729 -5.4649 -1.3414 37 1 1.4408 -7.8140 -4.3106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:14 Heat of formation + Delta-G solvation = 31.067136 kcal Electronic energy + Delta-G solvation = -18863.767869 eV Core-core repulsion = 15993.490370 eV Total energy + Delta-G solvation = -2870.277499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34458 -37.78433 -36.61690 -33.82226 -32.04006 -31.13436 -30.42133 -29.39301 -26.93315 -25.20824 -24.29146 -22.83161 -21.55902 -20.23563 -19.77600 -17.08508 -16.86355 -16.40182 -16.16102 -15.32708 -14.93433 -14.51075 -14.03038 -13.77758 -13.58813 -13.34973 -13.15804 -12.68375 -12.56127 -12.43286 -12.11886 -12.08791 -11.94991 -11.69172 -11.18669 -11.03887 -10.71431 -10.48525 -10.13438 -9.80900 -9.47990 -9.16892 -8.57039 -8.50351 -7.93017 -7.41270 -6.03974 -4.01430 1.02396 1.47252 2.42753 2.79666 3.24674 3.34387 3.37841 3.83852 4.40078 4.51396 4.73000 4.98295 5.03270 5.18787 5.20275 5.25531 5.31752 5.38580 5.40471 5.58010 5.68686 5.77566 5.84958 5.94593 6.14769 6.17314 6.27688 6.35789 6.40245 6.47688 6.57004 6.63158 6.72356 6.78964 7.08947 7.31222 7.69980 7.89921 8.29815 8.69909 9.08212 9.58346 11.09632 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.005196 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.716195 B = 5387.051980 C = 6108.165712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 O -0.196 6.196 4 C 0.047 3.953 5 C -0.113 4.113 6 C -0.099 4.099 7 C -0.141 4.141 8 C -0.058 4.058 9 C -0.108 4.108 10 C -0.153 4.153 11 C 0.126 3.874 12 N -0.665 5.665 13 C 0.182 3.818 14 H 0.034 0.966 15 C -0.183 4.183 16 C -0.497 4.497 17 H 0.081 0.919 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.886 3.114 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.270 1.270 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.331 0.669 34 H 0.026 0.974 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 15.015 11.039 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 O -0.098 6.098 4 C 0.000 4.000 5 C -0.132 4.132 6 C -0.117 4.117 7 C -0.160 4.160 8 C -0.076 4.076 9 C -0.109 4.109 10 C -0.154 4.154 11 C -0.003 4.003 12 N -0.295 5.295 13 C 0.073 3.927 14 H 0.052 0.948 15 C -0.242 4.242 16 C -0.536 4.536 17 H 0.100 0.900 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.224 1.224 23 H -0.195 1.195 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.647 14.932 10.860 18.652 hybrid contribution -1.468 -0.681 0.777 1.795 sum 1.179 14.251 11.637 18.436 Atomic orbital electron populations 1.20401 0.84994 1.04400 1.03560 1.22071 0.93694 0.83353 1.03412 1.83899 1.14985 1.33964 1.76988 1.19588 0.83214 0.93659 1.03574 1.19837 0.88177 0.99346 1.05814 1.20860 0.96265 0.94687 0.99875 1.20762 0.98394 0.93770 1.03028 1.20413 0.90072 1.00591 0.96483 1.19780 0.93958 0.92550 1.04621 1.20945 0.90720 0.95949 1.07832 1.20270 0.98619 0.88810 0.92640 1.60650 1.55120 1.04253 1.09452 1.19672 0.88728 0.85562 0.98697 0.94789 1.22873 1.01703 1.00753 0.98901 1.20975 1.34968 0.96333 1.01300 0.90047 1.24941 0.95863 0.97516 0.95081 1.69882 1.47086 1.13665 1.23344 0.86899 0.79994 0.78910 0.82534 1.20793 1.22429 1.19499 0.89979 0.90280 0.89047 0.85524 0.85163 0.85526 0.85129 0.95112 0.90547 0.85214 0.95490 0.92680 0.93575 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.00 36.01 0.36 -0.47 16 2 C 0.02 0.33 7.23 -35.80 -0.26 0.07 16 3 O -0.20 -3.02 10.58 3.90 0.04 -2.98 16 4 C 0.05 0.72 7.42 -38.48 -0.29 0.43 16 5 C -0.11 -1.42 10.07 -39.47 -0.40 -1.81 16 6 C -0.10 -1.11 10.01 -39.54 -0.40 -1.50 16 7 C -0.14 -1.74 9.98 -39.94 -0.40 -2.14 16 8 C -0.06 -0.86 10.05 -39.69 -0.40 -1.26 16 9 C -0.11 -1.77 6.38 -105.16 -0.67 -2.44 16 10 C -0.15 -2.49 5.86 -102.66 -0.60 -3.09 16 11 C 0.13 2.16 5.57 -4.97 -0.03 2.13 16 12 N -0.66 -13.55 6.22 -109.22 -0.68 -14.23 16 13 C 0.18 4.23 2.16 -68.87 -0.15 4.08 16 14 H 0.03 0.82 6.86 -51.93 -0.36 0.47 16 15 C -0.18 -3.83 8.64 37.16 0.32 -3.51 16 16 C -0.50 -14.01 9.42 -34.44 -0.32 -14.34 16 17 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 19 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 20 Si 0.89 21.77 24.37 -169.99 -4.14 17.63 16 21 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 22 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 27 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.03 0.48 7.01 -51.93 -0.36 0.12 16 32 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 33 H 0.33 6.40 8.46 -39.29 -0.33 6.07 16 34 H 0.03 0.47 7.45 -51.93 -0.39 0.08 16 35 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 36 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -31.83 305.69 -7.72 -39.55 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.99 Total: 4.33 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.33 Total: -22.01 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.09 Total: -41.13 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.83 -7.72 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.617 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds