Wall clock time and date at job start Mon Mar 30 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34450 * 124.92423 * 2 1 4 4 C 1.34810 * 110.89143 * 180.02562 * 3 2 1 5 5 C 1.38936 * 133.49194 * 180.02562 * 4 3 2 6 6 C 1.37846 * 119.81636 * 179.97438 * 5 4 3 7 7 C 1.38745 * 120.68467 * 0.02562 * 6 5 4 8 8 C 1.36734 * 120.42034 * 0.02562 * 7 6 5 9 9 C 1.39416 * 119.71356 * 359.67360 * 8 7 6 10 10 C 1.33999 * 124.92345 * 180.02562 * 2 1 3 11 11 C 1.50699 * 126.90693 * 359.95850 * 10 2 1 12 12 N 1.46906 * 109.47140 * 90.02565 * 11 10 2 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47465 * 324.99806 * 13 12 11 15 15 C 1.53000 * 109.47140 * 84.99977 * 13 12 11 16 16 C 1.50700 * 109.46579 * 205.00008 * 13 12 11 17 17 H 1.07990 * 120.00516 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99809 * 180.02562 * 16 13 12 19 19 N 1.31506 * 120.00230 * 179.97438 * 18 16 13 20 20 Si 1.86806 * 119.99867 * 359.97438 * 18 16 13 21 21 H 1.48500 * 109.47166 * 89.99781 * 20 18 16 22 22 H 1.48497 * 109.46953 * 210.00092 * 20 18 16 23 23 H 1.48507 * 109.46801 * 329.99835 * 20 18 16 24 24 H 1.08994 * 109.47434 * 269.97555 * 1 2 3 25 25 H 1.08999 * 109.47125 * 29.98202 * 1 2 3 26 26 H 1.08999 * 109.46522 * 149.97423 * 1 2 3 27 27 H 1.08004 * 120.09578 * 359.97339 * 5 4 3 28 28 H 1.08003 * 119.66014 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.79086 * 179.97438 * 7 6 5 30 30 H 1.08000 * 120.14389 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47247 * 330.02586 * 11 10 2 32 32 H 1.09001 * 109.47358 * 210.02012 * 11 10 2 33 33 H 1.00902 * 110.99923 * 303.95945 * 12 11 10 34 34 H 1.08994 * 109.46950 * 300.00235 * 15 13 12 35 35 H 1.09006 * 109.46704 * 59.99717 * 15 13 12 36 36 H 1.08997 * 109.47119 * 179.97438 * 15 13 12 37 37 H 0.97005 * 120.00357 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1024 0.0000 4 6 3.5846 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0004 6 6 5.9771 0.8805 -0.0006 7 6 6.0491 -0.5050 -0.0015 8 6 4.9075 -1.2577 -0.0028 9 6 3.6641 -0.6271 0.0037 10 6 2.2741 -1.0987 -0.0005 11 6 1.8042 -2.5305 -0.0003 12 7 1.6513 -2.9960 -1.3852 13 6 1.1928 -4.3910 -1.4242 14 1 1.6323 -4.9413 -0.5923 15 6 -0.3326 -4.4298 -1.3120 16 6 1.6172 -5.0230 -2.7247 17 1 2.1716 -4.4460 -3.4500 18 6 1.2967 -6.3377 -2.9892 19 7 1.6665 -6.8892 -4.1243 20 14 0.3370 -7.3357 -1.7351 21 1 -1.1178 -7.1885 -1.9938 22 1 0.7172 -8.7669 -1.8457 23 1 0.6490 -6.8448 -0.3686 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3632 -0.8898 -0.5142 27 1 4.7118 2.6006 0.0000 28 1 6.8866 1.4629 -0.0008 29 1 7.0130 -0.9922 -0.0021 30 1 4.9688 -2.3359 -0.0032 31 1 0.8454 -2.5982 0.5137 32 1 2.5366 -3.1533 0.5134 33 1 1.0259 -2.3955 -1.9015 34 1 -0.6395 -3.9726 -0.3714 35 1 -0.7722 -3.8795 -2.1440 36 1 -0.6729 -5.4649 -1.3414 37 1 1.4408 -7.8140 -4.3106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:14 Heat of formation + Delta-G solvation = 9.862696 kcal Electronic energy + Delta-G solvation = -18864.687362 eV Core-core repulsion = 15993.490370 eV Total energy + Delta-G solvation = -2871.196992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.43938 -38.79343 -38.24098 -35.32442 -33.91738 -32.10315 -31.57730 -30.87692 -28.02779 -27.13936 -25.76182 -23.88305 -22.56858 -22.10585 -20.95105 -18.86101 -17.94977 -17.80571 -17.31115 -16.85009 -16.31547 -15.98513 -15.49310 -15.14229 -14.73621 -14.61711 -14.45694 -13.99716 -13.92909 -13.76369 -13.59212 -13.31779 -13.07829 -12.90801 -12.79299 -12.48511 -12.29021 -11.98801 -11.77063 -11.48779 -11.22094 -10.84239 -10.72727 -9.55827 -9.12100 -8.90119 -8.26196 -6.29181 -0.01274 0.42061 1.30192 1.30837 1.36703 1.46861 1.75652 2.33122 2.79130 3.07922 3.48909 3.56290 3.73745 3.93370 4.13866 4.16526 4.32960 4.44614 4.45892 4.50140 4.57417 4.61380 4.64078 4.67597 4.72874 4.80684 4.92786 4.98954 5.10147 5.32243 5.39122 5.39892 5.52115 5.57708 5.66967 5.77691 6.01534 6.22725 6.68740 6.71376 6.78201 7.35897 8.91517 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.005196 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.716195 B = 5387.051980 C = 6108.165712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.033 3.967 3 O -0.202 6.202 4 C 0.021 3.979 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.135 4.135 8 C -0.090 4.090 9 C -0.137 4.137 10 C -0.188 4.188 11 C 0.137 3.863 12 N -0.680 5.680 13 C 0.188 3.812 14 H 0.029 0.971 15 C -0.177 4.177 16 C -0.505 4.505 17 H 0.030 0.970 18 C 0.008 3.992 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.264 1.264 22 H -0.300 1.300 23 H -0.249 1.249 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.117 0.883 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.335 0.665 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 16.568 13.155 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.015 4.015 3 O -0.105 6.105 4 C -0.025 4.025 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.153 4.153 8 C -0.108 4.108 9 C -0.138 4.138 10 C -0.190 4.190 11 C 0.008 3.992 12 N -0.311 5.311 13 C 0.078 3.922 14 H 0.047 0.953 15 C -0.236 4.236 16 C -0.543 4.543 17 H 0.048 0.952 18 C -0.189 4.189 19 N -0.594 5.594 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.228 1.228 23 H -0.173 1.173 24 H 0.124 0.876 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.172 0.828 28 H 0.189 0.811 29 H 0.170 0.830 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.890 16.519 12.994 21.102 hybrid contribution -1.078 -1.028 0.063 1.491 sum 0.811 15.491 13.057 20.276 Atomic orbital electron populations 1.20599 0.82224 1.05249 1.05298 1.22705 0.95159 0.82686 1.00952 1.83895 1.15255 1.34248 1.77068 1.20038 0.83871 0.93681 1.04930 1.20331 0.87569 1.00796 1.04446 1.21353 0.97380 0.94359 0.97852 1.21143 0.98504 0.94596 1.01094 1.20531 0.91002 1.00389 0.98893 1.20090 0.94480 0.93609 1.05661 1.20934 0.91393 0.95866 1.10763 1.20135 0.99301 0.89265 0.90491 1.60450 1.55465 1.03134 1.12074 1.19425 0.90640 0.86753 0.95358 0.95338 1.22716 0.99081 1.00582 1.01193 1.21263 1.34108 0.96467 1.02485 0.95180 1.25844 0.97069 0.98787 0.97185 1.70055 1.49167 1.14237 1.25939 0.85768 0.78995 0.76520 0.80493 1.18997 1.22818 1.17256 0.87640 0.88614 0.88952 0.82773 0.81074 0.83035 0.86483 0.92877 0.91795 0.84689 0.91570 0.92452 0.94507 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.00 71.24 0.71 -0.76 16 2 C 0.03 0.93 7.23 24.72 0.18 1.11 16 3 O -0.20 -6.03 10.58 -8.95 -0.09 -6.13 16 4 C 0.02 0.64 7.42 22.99 0.17 0.81 16 5 C -0.11 -2.59 10.07 22.34 0.23 -2.37 16 6 C -0.09 -1.80 10.01 22.30 0.22 -1.58 16 7 C -0.14 -3.16 9.98 22.04 0.22 -2.94 16 8 C -0.09 -2.76 10.05 22.20 0.22 -2.54 16 9 C -0.14 -4.57 6.38 -20.21 -0.13 -4.69 16 10 C -0.19 -6.11 5.86 -18.59 -0.11 -6.22 16 11 C 0.14 4.63 5.57 85.56 0.48 5.11 16 12 N -0.68 -27.94 6.22 -499.46 -3.11 -31.05 16 13 C 0.19 8.65 2.16 44.17 0.10 8.74 16 14 H 0.03 1.35 6.86 -2.39 -0.02 1.34 16 15 C -0.18 -6.94 8.64 71.98 0.62 -6.32 16 16 C -0.50 -29.37 9.42 25.60 0.24 -29.13 16 17 H 0.03 2.00 8.06 -2.92 -0.02 1.97 16 18 C 0.01 0.45 5.45 84.66 0.46 0.91 16 19 N -0.95 -60.57 13.96 21.45 0.30 -60.28 16 20 Si 0.96 44.73 24.37 68.60 1.67 46.41 16 21 H -0.26 -11.60 6.87 99.48 0.68 -10.92 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.25 -10.70 6.53 99.48 0.65 -10.05 16 24 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.75 7.68 -2.39 -0.02 1.74 16 27 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.05 1.54 7.01 -2.39 -0.02 1.53 16 32 H 0.06 2.28 8.06 -2.39 -0.02 2.26 16 33 H 0.34 13.00 8.46 -89.69 -0.76 12.24 16 34 H 0.07 2.08 7.45 -2.39 -0.02 2.06 16 35 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 36 H 0.04 1.51 3.27 -2.39 -0.01 1.50 16 37 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -72.34 305.69 2.62 -69.72 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.24 Total: 21.18 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.61 Total: -39.86 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -2.81 Total: -91.32 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.09 Total: -6.13 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.41 kcal Total: -72.34 2.62 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.585 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds