Wall clock time and date at job start Sun Mar 29 2020 23:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47570 * 2 1 4 4 C 1.53944 * 113.83779 * 86.34744 * 3 2 1 5 5 N 1.47585 * 86.11394 * 137.96701 * 4 3 2 6 6 C 1.34769 * 134.48999 * 155.36087 * 5 4 3 7 7 O 1.21551 * 120.00177 * 177.06435 * 6 5 4 8 8 C 1.47893 * 120.00367 * 357.06771 * 6 5 4 9 9 C 1.39921 * 120.02257 * 8.23145 * 8 6 5 10 10 C 1.38328 * 120.35575 * 179.97438 * 9 8 6 11 11 C 1.37756 * 120.41215 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.04126 * 0.02562 * 11 10 9 13 13 C 1.41439 * 120.18074 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99809 * 34.68905 * 13 12 11 15 15 C 1.39936 * 120.00182 * 214.69661 * 13 12 11 16 16 N 1.30827 * 119.99887 * 355.59350 * 15 13 12 17 17 Si 1.86799 * 119.99928 * 175.58969 * 15 13 12 18 18 H 1.48501 * 109.47079 * 60.00264 * 17 15 13 19 19 H 1.48500 * 109.46849 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47204 * 299.99896 * 17 15 13 21 21 C 1.38994 * 120.02366 * 187.96621 * 8 6 5 22 22 C 1.47582 * 91.01552 * 335.35846 * 5 4 3 23 23 H 1.08999 * 109.47439 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47106 * 300.00703 * 1 2 3 25 25 H 1.09008 * 109.46651 * 60.00349 * 1 2 3 26 26 H 1.09001 * 109.46941 * 239.99125 * 2 1 3 27 27 H 1.09006 * 109.46689 * 120.00196 * 2 1 3 28 28 H 1.08999 * 112.94079 * 314.66307 * 3 2 1 29 29 H 1.08994 * 113.77186 * 252.26678 * 4 3 2 30 30 H 1.09000 * 113.76865 * 23.66442 * 4 3 2 31 31 H 1.07995 * 119.82041 * 0.02562 * 9 8 6 32 32 H 1.08001 * 119.78957 * 180.02562 * 10 9 8 33 33 H 1.07995 * 119.97441 * 180.02562 * 11 10 9 34 34 H 0.97005 * 119.99781 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.20818 * 359.97438 * 21 8 6 36 36 H 1.08997 * 113.76834 * 270.34058 * 22 5 4 37 37 H 1.08995 * 113.77057 * 138.94115 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.1630 2.0589 1.4053 5 7 3.4427 2.6246 0.9356 6 6 4.1912 3.6882 1.2886 7 8 5.2596 3.8872 0.7440 8 6 3.7129 4.6135 2.3385 9 6 2.5730 4.2959 3.0852 10 6 2.1199 5.1561 4.0692 11 6 2.7849 6.3350 4.3252 12 6 3.9327 6.6719 3.5836 13 6 4.6181 7.8813 3.8444 14 1 4.6755 8.2628 4.8531 15 6 5.2216 8.5838 2.7953 16 7 5.2267 8.0795 1.5881 17 14 6.0199 10.2414 3.1186 18 1 7.1086 10.0804 4.1156 19 1 6.5827 10.7750 1.8522 20 1 5.0025 11.1865 3.6446 21 6 4.3986 5.7965 2.5880 22 6 3.5734 1.5576 -0.0756 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.5166 2.0782 -0.7139 29 1 1.4042 2.8103 1.6232 30 1 2.2740 1.3215 2.2003 31 1 2.0446 3.3740 2.8927 32 1 1.2393 4.9017 4.6403 33 1 2.4252 7.0011 5.0954 34 1 5.6454 8.5663 0.8610 35 1 5.2817 6.0434 2.0173 36 1 4.0987 0.6730 0.2845 37 1 3.9406 1.9088 -1.0398 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335073717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:10 Heat of formation + Delta-G solvation = 14.829297 kcal Electronic energy + Delta-G solvation = -18786.158080 eV Core-core repulsion = 15915.176456 eV Total energy + Delta-G solvation = -2870.981625 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10374 -37.85116 -36.67998 -33.68816 -33.24756 -30.43971 -29.42143 -28.20190 -26.36190 -25.06296 -23.87927 -21.71707 -20.90088 -20.10816 -18.80681 -17.49842 -16.14685 -15.77004 -15.45417 -14.92168 -14.60073 -14.44457 -13.75551 -13.44210 -13.26799 -13.06704 -12.55465 -12.54492 -12.33882 -12.07160 -11.86451 -11.61588 -11.16233 -11.11065 -11.04799 -10.92927 -10.78520 -10.46378 -10.18372 -9.95301 -9.61628 -9.24716 -8.88174 -8.30399 -7.60299 -7.37032 -6.61256 -4.42677 2.21530 2.85867 3.10728 3.12868 3.16940 3.26358 3.85767 3.98895 4.31257 4.67330 4.79998 4.90789 5.09048 5.23065 5.34478 5.46625 5.52926 5.58827 5.63855 5.66240 5.75551 5.82309 5.94742 6.04088 6.08021 6.28682 6.31918 6.37558 6.74668 7.03574 7.04996 7.29221 7.41980 7.69407 7.84103 7.97696 8.20959 8.23134 8.55407 8.86609 8.88403 8.96301 10.29957 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034583 B = 0.004756 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.460377 B = 5886.037318 C = 6445.789319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.105 3.895 5 N -0.647 5.647 6 C 0.585 3.415 7 O -0.545 6.545 8 C -0.130 4.130 9 C -0.217 4.217 10 C -0.110 4.110 11 C -0.197 4.197 12 C 0.094 3.906 13 C -0.467 4.467 14 H 0.078 0.922 15 C 0.069 3.931 16 N -0.805 5.805 17 Si 0.918 3.082 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.082 4.082 22 C 0.109 3.891 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.143 0.857 36 H 0.078 0.922 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 -11.790 -2.470 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.145 4.145 4 C -0.018 4.018 5 N -0.383 5.383 6 C 0.380 3.620 7 O -0.423 6.423 8 C -0.134 4.134 9 C -0.236 4.236 10 C -0.129 4.129 11 C -0.217 4.217 12 C 0.091 3.909 13 C -0.497 4.497 14 H 0.096 0.904 15 C -0.147 4.147 16 N -0.432 5.432 17 Si 0.742 3.258 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.102 4.102 22 C -0.013 4.013 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.096 0.904 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.869 -11.419 -2.951 13.649 hybrid contribution 0.270 0.785 0.109 0.838 sum -6.599 -10.634 -2.841 12.834 Atomic orbital electron populations 1.21757 0.95558 1.01463 1.02135 1.21473 0.96159 0.95254 1.02311 1.23309 0.95918 0.97058 0.98265 1.23411 0.86236 0.96257 0.95888 1.49805 1.24409 1.25949 1.38157 1.18606 0.82362 0.79168 0.81905 1.90702 1.21993 1.73971 1.55630 1.19512 0.98881 0.96682 0.98277 1.21078 0.99712 1.01381 1.01443 1.20492 0.98992 0.95339 0.98038 1.21280 0.97538 0.98130 1.04768 1.17637 0.90309 0.92028 0.90891 1.19480 1.30029 1.05048 0.95169 0.90386 1.25915 0.94118 1.00018 0.94657 1.69727 1.34925 1.37594 1.00926 0.86216 0.79761 0.81266 0.78510 1.18991 1.20350 1.19092 1.21939 0.99540 0.89867 0.98835 1.23093 0.95181 0.89935 0.93138 0.92878 0.92432 0.92692 0.91562 0.91565 0.88177 0.88983 0.90055 0.87419 0.88842 0.88509 0.90739 0.83957 0.90431 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.11 -0.91 5.78 -26.73 -0.15 -1.07 16 3 C -0.13 -1.36 3.83 -89.70 -0.34 -1.71 16 4 C 0.10 1.38 6.09 -2.97 -0.02 1.37 16 5 N -0.65 -11.57 3.61 -179.48 -0.65 -12.21 16 6 C 0.59 13.75 7.98 -12.31 -0.10 13.65 16 7 O -0.54 -14.64 17.09 5.32 0.09 -14.55 16 8 C -0.13 -3.21 5.87 -105.03 -0.62 -3.83 16 9 C -0.22 -4.66 9.12 -38.92 -0.35 -5.01 16 10 C -0.11 -2.37 10.01 -39.72 -0.40 -2.77 16 11 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 12 C 0.09 2.53 5.55 -106.87 -0.59 1.94 16 13 C -0.47 -12.58 9.04 -37.73 -0.34 -12.92 16 14 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 15 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 16 N -0.81 -22.05 10.62 55.55 0.59 -21.46 16 17 Si 0.92 19.41 29.56 -169.99 -5.03 14.38 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.08 -2.25 8.21 -38.44 -0.32 -2.57 16 22 C 0.11 1.48 8.40 -2.97 -0.02 1.46 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.24 6.26 -51.93 -0.33 0.92 16 30 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.11 1.92 3.78 -52.49 -0.20 1.72 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.28 7.14 8.30 -40.82 -0.34 6.80 16 35 H 0.14 4.29 5.77 -52.49 -0.30 3.98 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -31.34 308.00 -8.71 -40.04 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.00 Total: 4.79 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -3.36 Total: -15.63 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: -0.06 Total: -33.67 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.09 Total: -14.55 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.34 -8.71 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335073717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.874 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds