Wall clock time and date at job start Sun Mar 29 2020 23:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47570 * 2 1 4 4 C 1.53944 * 113.83779 * 86.34744 * 3 2 1 5 5 N 1.47585 * 86.11394 * 137.96701 * 4 3 2 6 6 C 1.34769 * 134.48999 * 155.36087 * 5 4 3 7 7 O 1.21551 * 120.00177 * 177.06435 * 6 5 4 8 8 C 1.47893 * 120.00367 * 357.06771 * 6 5 4 9 9 C 1.39921 * 120.02257 * 8.23145 * 8 6 5 10 10 C 1.38328 * 120.35575 * 179.97438 * 9 8 6 11 11 C 1.37756 * 120.41215 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.04126 * 0.02562 * 11 10 9 13 13 C 1.41439 * 120.18074 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99809 * 34.68905 * 13 12 11 15 15 C 1.39936 * 120.00182 * 214.69661 * 13 12 11 16 16 N 1.30827 * 119.99887 * 355.59350 * 15 13 12 17 17 Si 1.86799 * 119.99928 * 175.58969 * 15 13 12 18 18 H 1.48501 * 109.47079 * 60.00264 * 17 15 13 19 19 H 1.48500 * 109.46849 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47204 * 299.99896 * 17 15 13 21 21 C 1.38994 * 120.02366 * 187.96621 * 8 6 5 22 22 C 1.47582 * 91.01552 * 335.35846 * 5 4 3 23 23 H 1.08999 * 109.47439 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47106 * 300.00703 * 1 2 3 25 25 H 1.09008 * 109.46651 * 60.00349 * 1 2 3 26 26 H 1.09001 * 109.46941 * 239.99125 * 2 1 3 27 27 H 1.09006 * 109.46689 * 120.00196 * 2 1 3 28 28 H 1.08999 * 112.94079 * 314.66307 * 3 2 1 29 29 H 1.08994 * 113.77186 * 252.26678 * 4 3 2 30 30 H 1.09000 * 113.76865 * 23.66442 * 4 3 2 31 31 H 1.07995 * 119.82041 * 0.02562 * 9 8 6 32 32 H 1.08001 * 119.78957 * 180.02562 * 10 9 8 33 33 H 1.07995 * 119.97441 * 180.02562 * 11 10 9 34 34 H 0.97005 * 119.99781 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.20818 * 359.97438 * 21 8 6 36 36 H 1.08997 * 113.76834 * 270.34058 * 22 5 4 37 37 H 1.08995 * 113.77057 * 138.94115 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.1630 2.0589 1.4053 5 7 3.4427 2.6246 0.9356 6 6 4.1912 3.6882 1.2886 7 8 5.2596 3.8872 0.7440 8 6 3.7129 4.6135 2.3385 9 6 2.5730 4.2959 3.0852 10 6 2.1199 5.1561 4.0692 11 6 2.7849 6.3350 4.3252 12 6 3.9327 6.6719 3.5836 13 6 4.6181 7.8813 3.8444 14 1 4.6755 8.2628 4.8531 15 6 5.2216 8.5838 2.7953 16 7 5.2267 8.0795 1.5881 17 14 6.0199 10.2414 3.1186 18 1 7.1086 10.0804 4.1156 19 1 6.5827 10.7750 1.8522 20 1 5.0025 11.1865 3.6446 21 6 4.3986 5.7965 2.5880 22 6 3.5734 1.5576 -0.0756 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.5166 2.0782 -0.7139 29 1 1.4042 2.8103 1.6232 30 1 2.2740 1.3215 2.2003 31 1 2.0446 3.3740 2.8927 32 1 1.2393 4.9017 4.6403 33 1 2.4252 7.0011 5.0954 34 1 5.6454 8.5663 0.8610 35 1 5.2817 6.0434 2.0173 36 1 4.0987 0.6730 0.2845 37 1 3.9406 1.9088 -1.0398 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335073717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:09 Heat of formation + Delta-G solvation = -3.978623 kcal Electronic energy + Delta-G solvation = -18786.973653 eV Core-core repulsion = 15915.176456 eV Total energy + Delta-G solvation = -2871.797197 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49091 -39.48348 -38.48439 -35.55918 -34.20854 -32.21453 -31.30302 -29.51148 -27.73714 -26.76413 -25.01282 -23.13563 -22.75729 -21.18102 -20.35883 -19.25141 -17.62814 -17.55653 -16.88639 -16.55009 -16.27994 -15.56518 -15.09421 -15.02957 -14.69043 -14.48189 -14.32052 -13.80334 -13.58135 -13.48409 -13.04286 -12.93364 -12.81228 -12.70897 -12.45680 -12.17562 -11.99916 -11.80118 -11.70945 -11.55680 -11.17593 -11.12219 -10.57991 -9.81349 -9.41338 -9.29070 -8.52939 -6.45773 0.34397 1.00769 1.35701 1.46516 1.49735 1.87533 2.06493 2.21350 2.80954 3.33504 3.61995 3.66674 3.94132 4.11887 4.33038 4.36567 4.49046 4.52260 4.56777 4.60659 4.71717 4.75087 4.81372 4.98525 5.00979 5.11279 5.21139 5.25283 5.31253 5.35570 5.42146 5.51974 5.59068 5.83690 5.92410 6.08048 6.28576 6.55294 6.68811 6.89469 6.94585 7.22336 8.39388 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034583 B = 0.004756 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.460377 B = 5886.037318 C = 6445.789319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.101 4.101 4 C 0.096 3.904 5 N -0.649 5.649 6 C 0.573 3.427 7 O -0.600 6.600 8 C -0.145 4.145 9 C -0.197 4.197 10 C -0.105 4.105 11 C -0.201 4.201 12 C 0.060 3.940 13 C -0.503 4.503 14 H 0.083 0.917 15 C 0.021 3.979 16 N -0.848 5.848 17 Si 0.992 3.008 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.254 1.254 21 C -0.122 4.122 22 C 0.099 3.901 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.281 0.719 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.310 -13.762 -1.607 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.120 4.120 4 C -0.025 4.025 5 N -0.384 5.384 6 C 0.366 3.634 7 O -0.483 6.483 8 C -0.148 4.148 9 C -0.216 4.216 10 C -0.123 4.123 11 C -0.220 4.220 12 C 0.058 3.942 13 C -0.534 4.534 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.476 5.476 17 Si 0.813 3.187 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.178 1.178 21 C -0.143 4.143 22 C -0.022 4.022 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.563 -13.456 -2.079 16.639 hybrid contribution 0.927 1.155 -0.170 1.490 sum -8.637 -12.302 -2.248 15.198 Atomic orbital electron populations 1.21764 0.94806 1.02272 1.02121 1.21447 0.96646 0.92836 1.03484 1.23143 0.93458 0.99032 0.96362 1.23840 0.83648 0.96646 0.98357 1.49982 1.24971 1.24896 1.38504 1.18566 0.82337 0.80737 0.81745 1.90653 1.24446 1.75743 1.57432 1.19841 0.99685 0.96126 0.99109 1.21621 0.97798 1.02602 0.99549 1.21017 0.99797 0.93828 0.97674 1.21595 0.96676 0.99462 1.04281 1.17987 0.91932 0.92385 0.91857 1.19805 1.31877 1.05972 0.95771 0.89908 1.26899 0.94267 1.03858 0.94031 1.69899 1.36460 1.39249 1.01979 0.85101 0.78910 0.76246 0.78479 1.18285 1.19906 1.17812 1.21702 0.99886 0.92221 1.00505 1.23503 0.97885 0.89025 0.91786 0.91717 0.92409 0.92829 0.90402 0.90481 0.88209 0.88760 0.87144 0.83014 0.83838 0.86887 0.90810 0.87937 0.88148 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.11 -1.24 5.78 30.59 0.18 -1.06 16 3 C -0.10 -1.83 3.83 -10.14 -0.04 -1.87 16 4 C 0.10 2.17 6.09 86.48 0.53 2.69 16 5 N -0.65 -22.44 3.61 -840.02 -3.03 -25.47 16 6 C 0.57 27.65 7.98 86.80 0.69 28.34 16 7 O -0.60 -34.27 17.09 -3.88 -0.07 -34.34 16 8 C -0.14 -7.28 5.87 -20.13 -0.12 -7.39 16 9 C -0.20 -8.00 9.12 22.70 0.21 -7.79 16 10 C -0.11 -4.20 10.01 22.18 0.22 -3.98 16 11 C -0.20 -9.51 9.78 22.77 0.22 -9.28 16 12 C 0.06 3.39 5.55 -21.32 -0.12 3.28 16 13 C -0.50 -28.39 9.04 23.47 0.21 -28.18 16 14 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 15 C 0.02 1.13 5.42 85.25 0.46 1.59 16 16 N -0.85 -49.67 10.62 21.82 0.23 -49.43 16 17 Si 0.99 41.20 29.56 68.60 2.03 43.23 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 C -0.12 -7.17 8.21 23.01 0.19 -6.98 16 22 C 0.10 2.51 8.40 86.48 0.73 3.24 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.79 7.88 -2.38 -0.02 0.77 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.13 6.26 -2.39 -0.01 2.12 16 30 H 0.11 1.96 7.92 -2.39 -0.02 1.94 16 31 H 0.15 4.72 3.78 -2.91 -0.01 4.71 16 32 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 34 H 0.28 15.30 8.30 -92.70 -0.77 14.53 16 35 H 0.10 6.77 5.77 -2.91 -0.02 6.75 16 36 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -75.22 308.00 4.31 -70.92 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.07 Total: 23.37 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 4.08 Total: -28.28 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.80 Total: -74.90 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.07 Total: -34.34 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -75.22 4.31 -70.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335073717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.937 kcal (2) G-P(sol) polarization free energy of solvation -75.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds