Wall clock time and date at job start Mon Mar 30 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 C 1.52998 * 109.47301 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47009 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99906 * 275.64422 * 5 4 3 7 7 H 1.08001 * 119.99982 * 34.00230 * 6 5 4 8 8 C 1.38807 * 120.00132 * 213.99838 * 6 5 4 9 9 N 1.31620 * 120.00100 * 22.95804 * 8 6 5 10 10 Si 1.86798 * 120.00109 * 202.95782 * 8 6 5 11 11 H 1.48503 * 109.47172 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47314 * 120.00004 * 10 8 6 13 13 H 1.48505 * 109.47191 * 239.99914 * 10 8 6 14 14 C 1.46492 * 119.99996 * 95.65089 * 5 4 3 15 15 C 1.50705 * 109.47218 * 269.99694 * 14 5 4 16 16 C 1.38354 * 120.34280 * 270.00192 * 15 14 5 17 17 N 1.31925 * 121.09224 * 180.02562 * 16 15 14 18 18 C 1.31690 * 121.88293 * 359.97438 * 17 16 15 19 19 C 1.39585 * 120.56031 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.56614 * 180.02562 * 19 18 17 21 21 N 5.98787 * 71.36255 * 57.87788 * 2 1 3 22 22 C 1.38346 * 120.34525 * 89.99533 * 15 14 5 23 23 H 1.08998 * 109.46970 * 299.99496 * 1 2 3 24 24 H 1.08989 * 109.47084 * 60.00500 * 1 2 3 25 25 H 1.09004 * 109.46623 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47349 * 239.99626 * 2 1 3 27 27 H 1.09002 * 109.46797 * 119.99481 * 2 1 3 28 28 H 1.08999 * 109.46808 * 59.99616 * 3 2 1 29 29 H 1.09000 * 109.46561 * 300.00135 * 3 2 1 30 30 H 1.09005 * 109.46804 * 59.99802 * 4 3 2 31 31 H 1.08997 * 109.47069 * 300.00268 * 4 3 2 32 32 H 0.96996 * 120.00269 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47758 * 149.99995 * 14 5 4 34 34 H 1.09001 * 109.47367 * 29.99342 * 14 5 4 35 35 H 1.07998 * 119.45274 * 0.04103 * 16 15 14 36 36 H 1.08008 * 119.71767 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.85827 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1770 3.5075 -1.1805 7 1 3.4735 3.3300 -1.9804 8 6 5.2015 4.4288 -1.3490 9 7 6.2921 4.3414 -0.6173 10 14 5.0325 5.7926 -2.6143 11 1 3.7216 5.6708 -3.3012 12 1 5.1156 7.1107 -1.9354 13 1 6.1262 5.6801 -3.6125 14 6 4.4197 3.4735 1.2623 15 6 3.2104 4.1677 1.8342 16 6 2.9391 5.4838 1.5048 17 7 1.8851 6.1059 1.9972 18 6 1.0465 5.5097 2.8190 19 6 1.2489 4.1821 3.1997 20 6 0.3367 3.5334 4.0929 21 7 -0.3835 3.0169 4.8053 22 6 2.3601 3.4956 2.6939 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 7.0079 4.9854 -0.7348 33 1 5.2072 4.2053 1.0820 34 1 4.7756 2.7232 1.9683 35 1 3.6010 6.0104 0.8333 36 1 0.1947 6.0526 3.2016 37 1 2.5482 2.4680 2.9680 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144083708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:50 Heat of formation + Delta-G solvation = 55.213238 kcal Electronic energy + Delta-G solvation = -19170.150176 eV Core-core repulsion = 16333.212482 eV Total energy + Delta-G solvation = -2836.937694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25350 -38.15804 -37.60366 -35.62661 -33.96411 -33.12526 -32.53323 -29.47079 -27.66064 -25.61165 -25.39001 -23.67651 -22.42599 -21.70923 -19.52493 -18.46771 -17.86238 -17.58118 -16.67689 -16.27802 -15.53763 -15.37199 -15.18479 -15.03739 -14.53523 -14.26943 -14.15646 -14.00883 -13.90445 -13.67071 -13.27977 -13.12720 -13.00816 -12.77420 -12.46420 -12.12309 -12.02709 -11.91930 -11.82364 -11.65613 -11.34038 -10.63006 -10.57614 -10.39582 -9.85371 -8.57991 -7.81664 -5.37873 -0.34479 0.33213 1.47120 1.53510 1.54846 1.61199 1.94338 2.53791 2.74867 2.92477 3.26542 3.55438 3.78849 3.82306 4.03917 4.15412 4.17446 4.33204 4.36268 4.43231 4.58494 4.79436 4.91233 4.92985 4.98963 5.05554 5.06563 5.09225 5.20129 5.36069 5.40858 5.52574 5.61942 5.67176 5.73768 5.81442 6.35638 6.48984 6.96536 7.18798 7.87480 8.37589 9.14592 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.008083 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.431576 B = 3463.029022 C = 4648.622323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.145 3.855 5 N -0.588 5.588 6 C -0.255 4.255 7 H 0.050 0.950 8 C -0.023 4.023 9 N -0.908 5.908 10 Si 0.937 3.063 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.294 1.294 14 C 0.176 3.824 15 C -0.127 4.127 16 C 0.132 3.868 17 N -0.499 5.499 18 C 0.139 3.861 19 C -0.087 4.087 20 C 0.290 3.710 21 N -0.450 5.450 22 C -0.018 4.018 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.254 0.746 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.141 0.859 36 H 0.189 0.811 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -2.678 5.303 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.020 3.980 5 N -0.307 5.307 6 C -0.385 4.385 7 H 0.068 0.932 8 C -0.221 4.221 9 N -0.552 5.552 10 Si 0.766 3.234 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.222 1.222 14 C 0.049 3.951 15 C -0.132 4.132 16 C -0.024 4.024 17 N -0.207 5.207 18 C -0.022 4.022 19 C -0.092 4.092 20 C -0.026 4.026 21 N -0.126 5.126 22 C -0.047 4.047 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.206 0.794 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.513 -2.545 6.117 10.787 hybrid contribution 0.651 0.204 -1.015 1.223 sum -7.862 -2.341 5.101 9.660 Atomic orbital electron populations 1.21729 0.95650 1.01810 1.01209 1.21462 0.95955 0.96183 1.02036 1.22066 0.97567 0.96419 1.00527 1.21034 0.92568 0.85266 0.99168 1.43947 1.75667 1.09349 1.01773 1.19114 1.06930 1.18828 0.93662 0.93206 1.25481 0.94048 1.02822 0.99790 1.70050 1.05082 1.36392 1.43625 0.85699 0.77315 0.80760 0.79638 1.20101 1.20884 1.22159 1.19941 0.92355 0.96998 0.85766 1.21920 1.00653 0.95030 0.95579 1.22791 0.92912 0.92282 0.94412 1.67790 1.04101 1.38485 1.10321 1.23232 0.97407 0.89906 0.91672 1.16934 0.95531 0.95889 1.00889 1.25379 0.92390 0.92580 0.92224 1.81299 1.10832 1.09199 1.11296 1.21628 0.90594 1.00011 0.92455 0.93411 0.93449 0.91654 0.92224 0.91407 0.92788 0.94697 0.94952 0.92904 0.93596 0.89563 0.93015 0.84143 0.79424 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.12 -3.01 5.93 30.60 0.18 -2.83 16 3 C -0.13 -4.02 5.51 30.59 0.17 -3.85 16 4 C 0.14 5.32 5.72 86.38 0.49 5.81 16 5 N -0.59 -25.53 2.44 -706.35 -1.73 -27.26 16 6 C -0.25 -12.62 9.48 84.03 0.80 -11.82 16 7 H 0.05 2.56 7.93 -2.91 -0.02 2.54 16 8 C -0.02 -1.18 4.95 84.86 0.42 -0.76 16 9 N -0.91 -47.67 11.31 21.65 0.24 -47.43 16 10 Si 0.94 41.51 29.61 68.60 2.03 43.54 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 14 C 0.18 7.01 5.48 85.64 0.47 7.48 16 15 C -0.13 -4.31 5.45 -19.81 -0.11 -4.41 16 16 C 0.13 4.69 10.85 84.71 0.92 5.61 16 17 N -0.50 -15.84 10.35 -194.70 -2.01 -17.86 16 18 C 0.14 3.55 10.92 85.04 0.93 4.47 16 19 C -0.09 -2.20 5.74 -21.26 -0.12 -2.33 16 20 C 0.29 7.38 15.38 88.32 1.36 8.73 16 21 N -0.45 -12.91 18.54 19.02 0.35 -12.56 16 22 C -0.02 -0.51 7.77 22.74 0.18 -0.33 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.70 6.15 -2.39 -0.01 1.68 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 1.27 8.08 -2.38 -0.02 1.25 16 31 H 0.05 1.75 7.83 -2.39 -0.02 1.73 16 32 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 33 H 0.09 4.02 5.27 -2.39 -0.01 4.01 16 34 H 0.05 1.89 7.81 -2.39 -0.02 1.87 16 35 H 0.14 5.48 8.06 -2.91 -0.02 5.46 16 36 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.15 3.68 8.03 -2.91 -0.02 3.66 16 Total: -1.00 -54.83 321.05 6.34 -48.49 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.06 Total: 9.93 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.40 Total: 3.13 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -3.14 Total: -105.10 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -54.83 6.34 -48.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144083708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.706 kcal (2) G-P(sol) polarization free energy of solvation -54.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds