Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 H 1.09001 * 109.47098 * 55.95973 * 3 2 1 5 5 C 1.50700 * 109.46854 * 175.95761 * 3 2 1 6 6 H 1.08004 * 120.00077 * 115.49717 * 5 3 2 7 7 C 1.37877 * 120.00286 * 295.49973 * 5 3 2 8 8 N 1.31516 * 119.99947 * 353.41414 * 7 5 3 9 9 Si 1.86793 * 120.00086 * 173.41243 * 7 5 3 10 10 H 1.48502 * 109.47441 * 60.00502 * 9 7 5 11 11 H 1.48503 * 109.46980 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47473 * 300.00002 * 9 7 5 13 13 N 1.46502 * 109.47283 * 295.95821 * 3 2 1 14 14 C 1.36035 * 126.34615 * 300.13194 * 13 3 2 15 15 C 1.50703 * 124.95455 * 0.02562 * 14 13 3 16 16 N 1.46902 * 109.46987 * 97.27507 * 15 14 13 17 17 N 1.30114 * 110.09902 * 180.02562 * 14 13 3 18 18 C 1.35785 * 109.64046 * 0.02562 * 17 14 13 19 19 C 1.39745 * 133.59942 * 180.02562 * 18 17 14 20 20 C 1.36601 * 119.88139 * 179.21916 * 19 18 17 21 21 C 1.38776 * 120.66995 * 0.63341 * 20 19 18 22 22 C 1.37851 * 120.45165 * 359.59337 * 21 20 19 23 23 C 1.38047 * 126.35119 * 119.81906 * 13 3 2 24 24 H 1.08994 * 109.46920 * 296.41566 * 1 2 3 25 25 H 1.09002 * 109.47228 * 176.40878 * 1 2 3 26 26 H 1.08998 * 109.47062 * 56.41099 * 1 2 3 27 27 H 1.08992 * 109.46669 * 120.00122 * 2 1 3 28 28 H 1.08999 * 109.46949 * 239.99669 * 2 1 3 29 29 H 0.96998 * 120.00313 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47458 * 217.28172 * 15 14 13 31 31 H 1.09008 * 109.46816 * 337.27700 * 15 14 13 32 32 H 1.00899 * 110.99499 * 185.86419 * 16 15 14 33 33 H 1.00894 * 110.99794 * 309.82043 * 16 15 14 34 34 H 1.08006 * 120.05635 * 359.94571 * 19 18 17 35 35 H 1.08004 * 119.66330 * 180.22918 * 20 19 18 36 36 H 1.08000 * 119.77423 * 179.61820 * 21 20 19 37 37 H 1.07998 * 120.15518 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6188 1.9768 0.8516 5 6 3.5437 1.4436 0.1002 6 1 4.1390 1.8266 -0.7155 7 6 4.1596 0.9555 1.2331 8 7 3.4378 0.6097 2.2767 9 14 6.0190 0.7854 1.2857 10 1 6.6439 2.1172 1.0833 11 1 6.4291 0.2410 2.6051 12 1 6.4623 -0.1380 0.2104 13 7 1.6328 2.1044 -1.2419 14 6 1.9635 1.7226 -2.5050 15 6 2.8201 0.5318 -2.8506 16 7 1.9589 -0.6095 -3.1880 17 7 1.4324 2.5352 -3.3713 18 6 0.7246 3.4952 -2.7223 19 6 -0.0285 4.5920 -3.1497 20 6 -0.6532 5.3879 -2.2319 21 6 -0.5381 5.1270 -0.8738 22 6 0.2034 4.0534 -0.4290 23 6 0.8375 3.2278 -1.3476 24 1 -0.3633 0.4572 0.9203 25 1 -0.3634 -1.0257 -0.0644 26 1 -0.3633 0.5685 -0.8561 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 3.8710 0.2660 3.0736 30 1 3.4526 0.7747 -3.7044 31 1 3.4463 0.2745 -1.9962 32 1 2.5058 -1.4453 -3.3305 33 1 1.2558 -0.7539 -2.4789 34 1 -0.1261 4.8032 -4.2044 35 1 -1.2374 6.2325 -2.5664 36 1 -1.0331 5.7693 -0.1604 37 1 0.2895 3.8546 0.6291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = 63.077380 kcal Electronic energy + Delta-G solvation = -19911.360725 eV Core-core repulsion = 17074.764046 eV Total energy + Delta-G solvation = -2836.596680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51065 -37.19603 -35.34603 -34.03249 -32.47715 -31.32301 -29.51022 -28.76894 -27.08464 -25.14549 -23.60615 -21.61105 -21.49766 -20.99468 -18.75345 -17.12173 -16.74634 -16.01319 -15.77877 -14.88465 -14.71201 -14.30920 -14.03206 -13.58652 -13.46100 -13.11724 -12.91832 -12.51419 -12.12861 -11.87413 -11.69155 -11.51801 -11.38534 -11.08682 -11.02914 -10.84654 -10.48463 -10.38215 -10.14611 -9.90486 -9.28599 -9.16838 -8.74308 -8.35096 -7.62938 -7.41528 -6.44705 -4.53735 1.53256 2.14297 3.09409 3.15565 3.17384 3.44740 3.58711 4.13146 4.45145 4.74230 4.86313 5.06809 5.19918 5.42747 5.56212 5.75534 5.85955 5.89089 5.91995 5.99404 6.05825 6.13639 6.19809 6.30756 6.43131 6.54705 6.65768 6.74988 6.93494 6.98827 7.14541 7.21109 7.29717 7.38846 7.47168 7.54911 7.69808 7.78754 8.02649 8.51641 8.68522 9.13884 10.61437 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.007850 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.154151 B = 3566.136070 C = 3946.869996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.263 3.737 4 H 0.062 0.938 5 C -0.543 4.543 6 H 0.066 0.934 7 C 0.074 3.926 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.448 5.448 14 C 0.294 3.706 15 C 0.131 3.869 16 N -0.842 5.842 17 N -0.503 5.503 18 C 0.038 3.962 19 C -0.072 4.072 20 C -0.140 4.140 21 C -0.122 4.122 22 C -0.098 4.098 23 C 0.049 3.951 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.270 0.730 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.343 0.657 33 H 0.343 0.657 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 1.107 -3.806 5.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.163 3.837 4 H 0.080 0.920 5 C -0.581 4.581 6 H 0.084 0.916 7 C -0.131 4.131 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.133 5.133 14 C 0.028 3.972 15 C 0.000 4.000 16 N -0.375 5.375 17 N -0.225 5.225 18 C -0.083 4.083 19 C -0.092 4.092 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.064 4.064 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.413 1.295 -4.956 6.761 hybrid contribution 1.267 -0.418 2.031 2.430 sum -3.146 0.877 -2.925 4.384 Atomic orbital electron populations 1.21849 0.98000 1.00184 1.00983 1.22060 0.93090 0.98709 1.02934 1.19320 0.95824 0.89626 0.78928 0.92019 1.21180 0.89552 1.43872 1.03486 0.91556 1.24890 0.99130 0.94452 0.94651 1.69900 1.36134 1.41805 1.03758 0.86476 0.84152 0.78936 0.77606 1.19882 1.20857 1.19763 1.46126 1.37141 1.21221 1.08786 1.23101 0.97290 0.96945 0.79890 1.20376 0.92344 0.85559 1.01739 1.58796 1.18424 1.07304 1.52985 1.70374 1.14978 1.05457 1.31641 1.19144 1.01926 0.97571 0.89621 1.19850 0.96866 0.93159 0.99343 1.20441 1.02157 1.00483 0.92967 1.20694 1.00422 0.97504 0.95600 1.20008 0.98751 0.94998 0.98132 1.18975 0.98835 0.92081 0.96475 0.93161 0.93796 0.93990 0.88432 0.93482 0.92044 0.89032 0.90130 0.84397 0.84224 0.86341 0.86354 0.86197 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.78 37.16 0.36 -2.44 16 2 C -0.13 -2.64 5.07 -26.73 -0.14 -2.78 16 3 C 0.26 5.98 2.10 -69.08 -0.14 5.84 16 4 H 0.06 1.55 7.61 -51.93 -0.40 1.15 16 5 C -0.54 -13.33 6.88 -34.44 -0.24 -13.57 16 6 H 0.07 1.67 7.25 -52.48 -0.38 1.29 16 7 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 8 N -0.88 -22.30 11.95 55.43 0.66 -21.64 16 9 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 N -0.45 -9.79 2.01 -105.34 -0.21 -10.00 16 14 C 0.29 6.25 6.75 -154.82 -1.05 5.20 16 15 C 0.13 2.40 6.12 -4.97 -0.03 2.37 16 16 N -0.84 -13.50 9.39 -11.40 -0.11 -13.61 16 17 N -0.50 -11.11 11.27 -8.23 -0.09 -11.20 16 18 C 0.04 0.81 7.23 -84.70 -0.61 0.20 16 19 C -0.07 -1.28 10.05 -39.61 -0.40 -1.67 16 20 C -0.14 -2.13 9.96 -39.97 -0.40 -2.53 16 21 C -0.12 -1.92 10.03 -39.52 -0.40 -2.32 16 22 C -0.10 -1.84 9.89 -39.50 -0.39 -2.23 16 23 C 0.05 1.05 6.87 -83.99 -0.58 0.47 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.80 7.62 -51.93 -0.40 0.41 16 27 H 0.10 2.20 6.62 -51.93 -0.34 1.86 16 28 H 0.05 0.90 3.79 -51.93 -0.20 0.70 16 29 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.08 1.56 5.20 -51.92 -0.27 1.29 16 32 H 0.34 4.47 9.08 -39.29 -0.36 4.12 16 33 H 0.34 5.68 6.83 -39.29 -0.27 5.41 16 34 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.12 2.15 7.76 -52.49 -0.41 1.74 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -27.24 300.10 -9.03 -36.27 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -4.69 Total: 13.01 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -4.10 Total: -11.73 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.25 Total: -56.45 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.24 -9.03 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.345 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds