Wall clock time and date at job start Mon Mar 30 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33516 * 125.68735 * 2 1 4 4 C 1.32563 * 109.15767 * 180.02562 * 3 2 1 5 5 C 1.40937 * 132.32478 * 179.97438 * 4 3 2 6 6 C 1.36021 * 119.32803 * 179.97438 * 5 4 3 7 7 C 1.40475 * 119.69122 * 0.03170 * 6 5 4 8 8 C 1.34947 * 120.30159 * 359.97394 * 7 6 5 9 9 N 1.36482 * 120.61132 * 0.02562 * 8 7 6 10 10 C 1.35109 * 125.68953 * 180.02562 * 2 1 3 11 11 C 1.50704 * 126.40793 * 0.02562 * 10 2 1 12 12 N 1.46906 * 109.46944 * 269.97460 * 11 10 2 13 13 C 1.46889 * 110.99948 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47625 * 325.00138 * 13 12 11 15 15 C 1.53003 * 109.47541 * 84.99843 * 13 12 11 16 16 C 1.50701 * 109.47228 * 204.99889 * 13 12 11 17 17 H 1.08006 * 119.99951 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00363 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00009 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99959 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47223 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46945 * 120.00175 * 20 18 16 23 23 H 1.48500 * 109.47023 * 239.99709 * 20 18 16 24 24 H 1.08998 * 109.46830 * 269.96632 * 1 2 3 25 25 H 1.08998 * 109.47366 * 29.96845 * 1 2 3 26 26 H 1.09005 * 109.47134 * 149.96866 * 1 2 3 27 27 H 1.08002 * 120.33407 * 0.05649 * 5 4 3 28 28 H 1.07996 * 120.15489 * 180.29802 * 6 5 4 29 29 H 1.07998 * 119.84598 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.69777 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.47432 * 29.97245 * 11 10 2 32 32 H 1.09000 * 109.47037 * 149.97396 * 11 10 2 33 33 H 1.00906 * 110.99768 * 303.95362 * 12 11 10 34 34 H 1.09002 * 109.46834 * 300.00233 * 15 13 12 35 35 H 1.09000 * 109.46797 * 59.99935 * 15 13 12 36 36 H 1.09000 * 109.47307 * 179.97438 * 15 13 12 37 37 H 0.96996 * 120.00249 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0844 0.0000 4 6 3.5567 0.7073 -0.0006 5 6 4.7629 1.4362 -0.0013 6 6 5.9465 0.7659 -0.0012 7 6 5.9505 -0.6389 -0.0011 8 6 4.7874 -1.3231 -0.0006 9 7 3.5928 -0.6630 -0.0006 10 6 2.2952 -1.0973 -0.0005 11 6 1.8319 -2.5314 -0.0017 12 7 1.6815 -2.9985 1.3830 13 6 1.2307 -4.3960 1.4211 14 1 0.5514 -4.5815 0.5890 15 6 2.4407 -5.3256 1.3083 16 6 0.5155 -4.6579 2.7215 17 1 0.4071 -3.8655 3.4473 18 6 -0.0004 -5.9091 2.9847 19 7 0.1319 -6.8742 2.1012 20 14 -0.8863 -6.2339 4.5969 21 1 -0.8999 -4.9932 5.4129 22 1 -2.2819 -6.6578 4.3182 23 1 -0.1818 -7.3087 5.3410 24 1 -0.3633 -0.0006 1.0277 25 1 -0.3634 0.8902 -0.5133 26 1 -0.3634 -0.8897 -0.5143 27 1 4.7476 2.5161 -0.0005 28 1 6.8787 1.3110 0.0031 29 1 6.8888 -1.1736 -0.0015 30 1 4.8019 -2.4030 -0.0001 31 1 0.8733 -2.6032 -0.5155 32 1 2.5671 -3.1503 -0.5161 33 1 2.5406 -2.8818 1.8993 34 1 2.9580 -5.1361 0.3678 35 1 3.1201 -5.1401 2.1403 36 1 2.1062 -6.3626 1.3370 37 1 -0.2313 -7.7544 2.2862 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:54 Heat of formation + Delta-G solvation = 83.770585 kcal Electronic energy + Delta-G solvation = -18934.856112 eV Core-core repulsion = 16099.156757 eV Total energy + Delta-G solvation = -2835.699355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.68096 -37.51790 -36.15120 -33.70495 -32.67707 -31.47570 -29.78758 -28.35844 -26.93913 -25.25935 -24.48368 -22.79099 -21.83184 -20.28899 -20.15005 -17.29507 -16.78969 -16.26419 -15.90006 -15.58261 -14.85588 -14.78335 -14.27805 -13.66845 -13.21850 -12.93214 -12.76234 -12.60382 -12.53403 -11.91016 -11.76993 -11.72602 -11.45695 -11.31661 -10.98727 -10.90818 -10.83167 -10.55395 -10.22121 -10.01014 -9.81702 -9.07245 -8.49784 -8.40642 -7.63821 -7.31705 -6.02567 -4.05792 0.78568 1.35246 2.70117 2.98611 3.29965 3.38014 3.43944 3.60771 4.26959 4.42061 4.52286 4.74698 4.84386 5.04736 5.25918 5.29367 5.35531 5.43790 5.51365 5.69673 5.91113 5.93882 5.98912 6.08459 6.14962 6.26359 6.37639 6.56869 6.58040 6.73166 6.89553 6.98795 7.20570 7.26115 7.65179 7.83367 8.06619 8.18833 8.41181 8.52716 9.01836 9.59929 11.04483 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.004897 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.359440 B = 5715.884604 C = 6233.799546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.075 3.925 3 N -0.494 5.494 4 C 0.214 3.786 5 C -0.080 4.080 6 C -0.107 4.107 7 C -0.153 4.153 8 C 0.066 3.934 9 N -0.359 5.359 10 C -0.046 4.046 11 C 0.138 3.862 12 N -0.675 5.675 13 C 0.211 3.789 14 H 0.036 0.964 15 C -0.170 4.170 16 C -0.493 4.493 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.092 0.908 32 H 0.023 0.977 33 H 0.323 0.677 34 H 0.003 0.997 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 11.364 -6.110 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 N -0.215 5.215 4 C -0.029 4.029 5 C -0.101 4.101 6 C -0.131 4.131 7 C -0.174 4.174 8 C -0.057 4.057 9 N -0.031 5.031 10 C -0.158 4.158 11 C 0.008 3.992 12 N -0.304 5.304 13 C 0.104 3.896 14 H 0.054 0.946 15 C -0.229 4.229 16 C -0.532 4.532 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.212 1.212 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.110 0.890 32 H 0.041 0.959 33 H 0.139 0.861 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.083 12.166 -6.065 16.349 hybrid contribution 0.860 -1.691 0.613 1.994 sum 9.943 10.475 -5.451 15.437 Atomic orbital electron populations 1.20128 0.86659 1.02448 1.03282 1.20676 0.96771 0.87082 1.01197 1.70620 0.98155 1.29521 1.23234 1.20842 0.94573 0.80354 1.07135 1.20201 0.87972 1.00285 1.01620 1.20953 0.97997 0.93935 1.00246 1.20721 0.97108 0.94726 1.04895 1.21629 0.83301 0.99047 1.01702 1.42712 1.05746 1.08794 1.45889 1.21259 0.80470 0.98443 1.15647 1.20280 0.99848 0.85634 0.93436 1.60896 1.35354 1.25327 1.08872 1.19223 0.92320 0.80039 0.98067 0.94582 1.22452 0.98522 1.06234 0.95681 1.21167 1.34105 0.95789 1.02167 0.91836 1.24942 0.96389 0.96110 0.97042 1.69881 1.46493 1.02623 1.34789 0.86445 0.79292 0.78127 0.83581 1.19707 1.21072 1.21232 0.90241 0.91456 0.90644 0.83590 0.84388 0.83530 0.82387 0.88988 0.95860 0.86073 0.97826 0.95365 0.89033 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.21 36.00 0.37 -0.64 16 2 C 0.07 1.31 7.06 -82.97 -0.59 0.72 16 3 N -0.49 -8.83 11.32 -9.00 -0.10 -8.93 16 4 C 0.21 3.42 7.81 -156.04 -1.22 2.21 16 5 C -0.08 -0.97 10.11 -39.36 -0.40 -1.37 16 6 C -0.11 -1.03 10.07 -39.54 -0.40 -1.43 16 7 C -0.15 -1.52 9.99 -39.91 -0.40 -1.91 16 8 C 0.07 0.83 10.85 -16.65 -0.18 0.65 16 9 N -0.36 -5.66 2.94 -58.46 -0.17 -5.83 16 10 C -0.05 -0.79 6.54 -81.47 -0.53 -1.32 16 11 C 0.14 2.48 5.69 -4.97 -0.03 2.45 16 12 N -0.67 -14.11 6.22 -109.22 -0.68 -14.79 16 13 C 0.21 5.13 2.57 -68.87 -0.18 4.95 16 14 H 0.04 0.95 7.80 -51.93 -0.41 0.55 16 15 C -0.17 -3.92 8.94 37.16 0.33 -3.59 16 16 C -0.49 -13.43 8.84 -34.44 -0.30 -13.73 16 17 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 18 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 19 N -0.90 -25.20 11.32 55.43 0.63 -24.57 16 20 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.06 7.13 -51.93 -0.37 0.69 16 27 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.09 1.63 7.05 -51.93 -0.37 1.26 16 32 H 0.02 0.40 7.44 -51.93 -0.39 0.02 16 33 H 0.32 6.65 8.46 -39.29 -0.33 6.31 16 34 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 35 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -30.75 310.80 -9.35 -40.10 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.07 Total: 4.64 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.62 Total: -11.58 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.33 Total: -54.13 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.75 -9.35 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.867 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds