Wall clock time and date at job start Mon Mar 30 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33516 * 125.68743 * 2 1 4 4 C 1.32563 * 109.15772 * 180.02562 * 3 2 1 5 5 C 1.40936 * 132.32488 * 180.02562 * 4 3 2 6 6 C 1.36021 * 119.32803 * 179.97438 * 5 4 3 7 7 C 1.40475 * 119.69122 * 0.02562 * 6 5 4 8 8 C 1.34946 * 120.30159 * 359.97438 * 7 6 5 9 9 N 1.36482 * 120.61112 * 0.02562 * 8 7 6 10 10 C 1.35109 * 125.68964 * 180.02562 * 2 1 3 11 11 C 1.50704 * 126.40778 * 0.02562 * 10 2 1 12 12 N 1.46898 * 109.47332 * 269.98324 * 11 10 2 13 13 C 1.46897 * 110.99905 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.47374 * 34.99477 * 13 12 11 15 15 C 1.53002 * 109.47156 * 274.99551 * 13 12 11 16 16 C 1.50702 * 109.47303 * 154.99753 * 13 12 11 17 17 H 1.07998 * 119.99558 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00078 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00170 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99830 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46958 * 60.00059 * 20 18 16 22 22 H 1.48508 * 109.47019 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47362 * 299.99840 * 20 18 16 24 24 H 1.08996 * 109.47255 * 90.02159 * 1 2 3 25 25 H 1.09004 * 109.46728 * 210.02066 * 1 2 3 26 26 H 1.08999 * 109.46859 * 330.01527 * 1 2 3 27 27 H 1.08002 * 120.33408 * 0.02562 * 5 4 3 28 28 H 1.08001 * 120.15027 * 180.27471 * 6 5 4 29 29 H 1.07998 * 119.84613 * 180.02562 * 7 6 5 30 30 H 1.08002 * 119.69777 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46959 * 29.98502 * 11 10 2 32 32 H 1.09002 * 109.47220 * 149.97739 * 11 10 2 33 33 H 1.00899 * 110.99601 * 303.95050 * 12 11 10 34 34 H 1.09002 * 109.46914 * 60.00038 * 15 13 12 35 35 H 1.08999 * 109.47487 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.46918 * 300.00205 * 15 13 12 37 37 H 0.97000 * 120.00099 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0844 0.0000 4 6 3.5567 0.7073 -0.0006 5 6 4.7629 1.4362 -0.0003 6 6 5.9465 0.7659 -0.0006 7 6 5.9505 -0.6389 -0.0015 8 6 4.7874 -1.3231 -0.0017 9 7 3.5928 -0.6630 -0.0015 10 6 2.2952 -1.0973 -0.0005 11 6 1.8319 -2.5314 -0.0017 12 7 1.6813 -2.9985 1.3829 13 6 1.2305 -4.3961 1.4209 14 1 1.6731 -4.9434 0.5887 15 6 -0.2947 -4.4432 1.3085 16 6 1.6580 -5.0267 2.7211 17 1 2.2099 -4.4474 3.4464 18 6 1.3456 -6.3436 2.9841 19 7 0.6741 -7.0493 2.1006 20 14 1.8763 -7.1255 4.5955 21 1 1.2731 -6.3802 5.7295 22 1 1.4204 -8.5384 4.6339 23 1 3.3565 -7.0794 4.7043 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5136 27 1 4.7476 2.5161 0.0008 28 1 6.8787 1.3111 0.0041 29 1 6.8888 -1.1737 -0.0013 30 1 4.8019 -2.4030 -0.0021 31 1 0.8734 -2.6031 -0.5157 32 1 2.5671 -3.1503 -0.5160 33 1 2.5402 -2.8818 1.8993 34 1 -0.6040 -3.9871 0.3680 35 1 -0.6293 -5.4802 1.3371 36 1 -0.7374 -3.8959 2.1407 37 1 0.4540 -7.9756 2.2858 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:58 Heat of formation + Delta-G solvation = 82.323515 kcal Electronic energy + Delta-G solvation = -18935.119313 eV Core-core repulsion = 16099.357208 eV Total energy + Delta-G solvation = -2835.762104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.66915 -37.50223 -36.04501 -33.70132 -32.70006 -31.44520 -29.74478 -28.41040 -26.97985 -25.42001 -24.42410 -22.77588 -21.82372 -20.18760 -19.84417 -17.31191 -16.79711 -16.40876 -15.86886 -15.56536 -15.00078 -14.73494 -14.12961 -13.58910 -13.42807 -12.98601 -12.79543 -12.63490 -12.46365 -11.93887 -11.78610 -11.69484 -11.33179 -11.21793 -10.96534 -10.90494 -10.78712 -10.42286 -10.18924 -10.09836 -9.80155 -8.92210 -8.54168 -8.48572 -7.61993 -7.36814 -6.08712 -4.15776 0.80527 1.36732 2.71715 2.98865 3.26865 3.31808 3.34800 3.61956 4.28347 4.35339 4.54904 4.77105 4.86208 5.06615 5.21984 5.27508 5.36289 5.47166 5.52454 5.71749 5.93355 5.94322 6.00162 6.05104 6.15816 6.25905 6.37504 6.59997 6.80063 6.89745 7.06520 7.14563 7.23680 7.41362 7.70779 7.80561 8.07176 8.19293 8.28004 8.54686 8.93084 9.50503 10.97332 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.005206 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.647616 B = 5376.947010 C = 6186.381324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.073 3.927 3 N -0.495 5.495 4 C 0.214 3.786 5 C -0.082 4.082 6 C -0.107 4.107 7 C -0.153 4.153 8 C 0.067 3.933 9 N -0.358 5.358 10 C -0.045 4.045 11 C 0.139 3.861 12 N -0.680 5.680 13 C 0.212 3.788 14 H 0.001 0.999 15 C -0.125 4.125 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.278 1.278 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.329 0.671 34 H 0.005 0.995 35 H 0.081 0.919 36 H 0.033 0.967 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 11.828 -6.035 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 N -0.216 5.216 4 C -0.029 4.029 5 C -0.102 4.102 6 C -0.130 4.130 7 C -0.174 4.174 8 C -0.056 4.056 9 N -0.031 5.031 10 C -0.157 4.157 11 C 0.008 3.992 12 N -0.311 5.311 13 C 0.105 3.895 14 H 0.019 0.981 15 C -0.183 4.183 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.204 1.204 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.178 0.822 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.146 0.854 34 H 0.024 0.976 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.828 12.614 -5.998 15.547 hybrid contribution 1.522 -1.817 0.641 2.455 sum 8.350 10.797 -5.356 14.663 Atomic orbital electron populations 1.20176 0.86801 1.03782 1.02231 1.20654 0.96714 0.87091 1.01426 1.70615 0.98172 1.29545 1.23251 1.20839 0.94562 0.80362 1.07132 1.20195 0.87978 1.00264 1.01750 1.20958 0.97989 0.93952 1.00150 1.20727 0.97146 0.94702 1.04873 1.21664 0.83256 0.99153 1.01520 1.42711 1.05773 1.08791 1.45828 1.21267 0.80499 0.98414 1.15551 1.20287 0.99815 0.85680 0.93421 1.60820 1.35882 1.25412 1.09021 1.19143 0.92982 0.81112 0.96259 0.98133 1.21721 0.97689 1.02386 0.96520 1.21185 1.35976 0.96062 1.02694 0.92357 1.24900 0.94945 0.97077 0.96915 1.69878 1.39099 1.09078 1.34677 0.86578 0.78862 0.78198 0.83863 1.20136 1.21221 1.20382 0.91329 0.89581 0.91103 0.83611 0.84391 0.83491 0.82232 0.89068 0.95766 0.85449 0.97563 0.90023 0.94777 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.03 36.00 0.36 -0.69 16 2 C 0.07 1.28 7.06 -82.97 -0.59 0.69 16 3 N -0.49 -8.85 11.32 -9.00 -0.10 -8.96 16 4 C 0.21 3.46 7.81 -156.04 -1.22 2.24 16 5 C -0.08 -1.00 10.11 -39.36 -0.40 -1.39 16 6 C -0.11 -1.05 10.07 -39.54 -0.40 -1.44 16 7 C -0.15 -1.57 9.99 -39.91 -0.40 -1.96 16 8 C 0.07 0.87 10.85 -16.65 -0.18 0.69 16 9 N -0.36 -5.74 2.94 -58.46 -0.17 -5.91 16 10 C -0.04 -0.78 6.54 -81.47 -0.53 -1.31 16 11 C 0.14 2.50 5.50 -4.97 -0.03 2.48 16 12 N -0.68 -14.33 6.29 -109.22 -0.69 -15.02 16 13 C 0.21 5.21 2.60 -68.86 -0.18 5.04 16 14 H 0.00 0.03 7.80 -51.93 -0.40 -0.38 16 15 C -0.12 -3.01 9.19 37.16 0.34 -2.67 16 16 C -0.52 -14.01 8.59 -34.44 -0.30 -14.30 16 17 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.09 1.31 7.75 -51.93 -0.40 0.91 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.09 1.62 7.06 -51.93 -0.37 1.25 16 32 H 0.02 0.43 8.05 -51.93 -0.42 0.02 16 33 H 0.33 6.99 8.21 -39.29 -0.32 6.67 16 34 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 35 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -30.56 311.37 -9.38 -39.94 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.11 Total: 4.55 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.61 Total: -11.01 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.33 Total: -54.11 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.56 -9.38 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.268 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds