Wall clock time and date at job start Sun Mar 29 2020 23:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42894 * 109.47560 * 338.14499 * 3 2 1 5 5 C 1.35900 * 117.00370 * 179.97438 * 4 3 2 6 6 C 1.38759 * 120.05239 * 0.02562 * 5 4 3 7 7 C 1.38119 * 119.94381 * 180.02562 * 6 5 4 8 8 C 1.38295 * 120.05704 * 359.97438 * 7 6 5 9 9 C 1.38240 * 120.10794 * 0.02562 * 8 7 6 10 10 C 1.38171 * 120.06065 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.03158 * 180.02562 * 10 9 8 12 12 N 1.46894 * 109.47332 * 259.95871 * 11 10 9 13 13 C 1.46907 * 111.00000 * 180.02562 * 12 11 10 14 14 H 1.08996 * 109.46744 * 34.99675 * 13 12 11 15 15 C 1.52997 * 109.46925 * 274.99912 * 13 12 11 16 16 C 1.50700 * 109.46864 * 154.99830 * 13 12 11 17 17 H 1.07987 * 120.00421 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99211 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00491 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99388 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47164 * 89.99931 * 20 18 16 22 22 H 1.48499 * 109.46803 * 209.99899 * 20 18 16 23 23 H 1.48501 * 109.47122 * 329.99697 * 20 18 16 24 24 H 4.38447 * 5.44491 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46995 * 218.14236 * 3 2 1 26 26 H 1.08998 * 109.47026 * 98.14966 * 3 2 1 27 27 H 1.08001 * 120.03003 * 0.02562 * 6 5 4 28 28 H 1.07997 * 119.97310 * 179.97438 * 7 6 5 29 29 H 1.07995 * 119.94657 * 179.74935 * 8 7 6 30 30 H 1.08005 * 119.96924 * 179.97438 * 9 8 7 31 31 H 1.09006 * 109.46890 * 19.95921 * 11 10 9 32 32 H 1.09005 * 109.46894 * 139.95221 * 11 10 9 33 33 H 1.00899 * 111.00377 * 56.04337 * 12 11 10 34 34 H 1.08999 * 109.47242 * 59.99742 * 15 13 12 35 35 H 1.09002 * 109.47130 * 180.02562 * 15 13 12 36 36 H 1.09002 * 109.47229 * 299.99951 * 15 13 12 37 37 H 0.96997 * 120.00087 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2495 0.5015 5 6 4.4703 -1.4143 0.5673 6 6 5.3161 -0.3933 0.1579 7 6 6.6851 -0.5635 0.2253 8 6 7.2131 -1.7500 0.7006 9 6 6.3726 -2.7687 1.1090 10 6 5.0023 -2.6038 1.0427 11 6 4.0866 -3.7145 1.4886 12 7 3.5974 -4.4475 0.3134 13 6 2.6992 -5.5400 0.7106 14 1 2.1190 -5.2348 1.5814 15 6 3.5262 -6.7795 1.0576 16 6 1.7655 -5.8616 -0.4278 17 1 1.8323 -5.3094 -1.3534 18 6 0.8259 -6.8609 -0.2872 19 7 0.7449 -7.5336 0.8399 20 14 -0.3311 -7.2600 -1.6985 21 1 0.2827 -8.3000 -2.5628 22 1 -1.6183 -7.7637 -1.1559 23 1 -0.5773 -6.0335 -2.4987 24 1 -1.0498 -0.0005 0.0000 25 1 3.0089 0.8091 0.6347 26 1 3.0092 0.1465 -1.0173 27 1 4.9043 0.5336 -0.2130 28 1 7.3439 0.2307 -0.0936 29 1 8.2838 -1.8826 0.7487 30 1 6.7873 -3.6945 1.4795 31 1 4.6331 -4.3962 2.1405 32 1 3.2410 -3.2923 2.0316 33 1 4.3652 -4.7940 -0.2421 34 1 4.2016 -6.5468 1.8809 35 1 2.8598 -7.5903 1.3519 36 1 4.1065 -7.0846 0.1868 37 1 0.0841 -8.2368 0.9385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:00 Heat of formation + Delta-G solvation = 46.795484 kcal Electronic energy + Delta-G solvation = -18662.167847 eV Core-core repulsion = 15792.572380 eV Total energy + Delta-G solvation = -2869.595467 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.08673 -37.47095 -35.84630 -33.36058 -32.83399 -31.05694 -29.86754 -28.05295 -27.25367 -25.10499 -24.22338 -22.16019 -21.06546 -20.07819 -18.33622 -17.97363 -16.36299 -15.88277 -15.84894 -15.40164 -14.68385 -14.43383 -14.30303 -13.71242 -13.46567 -12.88832 -12.63813 -12.58419 -12.29383 -11.71826 -11.58217 -11.36504 -11.20074 -10.97651 -10.77980 -10.67827 -10.40876 -10.32118 -10.09612 -10.06751 -9.79019 -8.93160 -8.72067 -8.28566 -7.93983 -7.07631 -5.90499 -3.92691 1.46483 1.61606 2.41194 2.83681 3.37183 3.42986 3.48653 3.82138 3.91846 4.43376 4.51517 4.86385 4.96673 5.07709 5.17080 5.26492 5.40883 5.45848 5.51560 5.74941 5.78694 5.90241 6.01133 6.11370 6.44776 6.47772 6.60694 6.71578 6.77598 6.91889 6.96628 7.17848 7.46524 7.58263 7.64031 7.81725 7.98076 8.37028 8.66477 8.72558 9.14724 9.71937 11.16644 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.006038 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.148271 B = 4636.090854 C = 5925.490634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.198 4.198 3 C 0.174 3.826 4 O -0.285 6.285 5 C 0.152 3.848 6 C -0.217 4.217 7 C -0.088 4.088 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.100 4.100 11 C 0.106 3.894 12 N -0.672 5.672 13 C 0.212 3.788 14 H 0.033 0.967 15 C -0.169 4.169 16 C -0.488 4.488 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.223 0.777 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.323 0.677 34 H 0.004 0.996 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 14.856 0.265 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.198 4.198 3 C 0.099 3.901 4 O -0.198 6.198 5 C 0.106 3.894 6 C -0.236 4.236 7 C -0.107 4.107 8 C -0.180 4.180 9 C -0.098 4.098 10 C -0.101 4.101 11 C -0.024 4.024 12 N -0.302 5.302 13 C 0.105 3.895 14 H 0.051 0.949 15 C -0.228 4.228 16 C -0.527 4.527 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.240 0.760 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.023 0.977 35 H 0.107 0.893 36 H 0.046 0.954 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.834 15.020 0.283 16.942 hybrid contribution -0.080 -0.770 -0.457 0.899 sum 7.754 14.249 -0.175 16.223 Atomic orbital electron populations 1.24963 0.95853 0.97001 0.99754 1.22207 0.93561 1.02638 1.01375 1.19205 0.85182 0.86045 0.99661 1.86333 1.18918 1.35101 1.79433 1.18762 0.81943 0.93676 0.95009 1.21192 0.94514 0.99462 1.08428 1.20818 0.94172 0.97367 0.98315 1.20957 0.99487 0.94255 1.03285 1.20940 0.91872 0.98779 0.98229 1.19472 0.93856 0.94213 1.02523 1.20697 0.95863 0.92155 0.93635 1.60806 1.20673 1.30355 1.18343 1.19171 0.89703 0.84297 0.96373 0.94908 1.22439 0.99146 1.04184 0.97051 1.21162 1.15111 1.16416 1.00040 0.92038 1.24941 0.97543 0.96281 0.95848 1.69885 1.35714 1.23595 1.24779 0.86531 0.80207 0.78446 0.82402 1.20899 1.21427 1.19941 0.76032 0.90207 0.89902 0.85770 0.86270 0.86306 0.85676 0.95700 0.90730 0.86087 0.97672 0.89293 0.95401 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.20 -2.92 13.73 -37.12 -0.51 -3.43 16 3 C 0.17 2.31 5.21 34.37 0.18 2.49 16 4 O -0.29 -4.97 9.33 -19.43 -0.18 -5.16 16 5 C 0.15 2.44 6.66 -39.22 -0.26 2.18 16 6 C -0.22 -2.78 9.04 -39.43 -0.36 -3.14 16 7 C -0.09 -1.02 10.04 -39.60 -0.40 -1.42 16 8 C -0.16 -1.95 10.04 -39.56 -0.40 -2.34 16 9 C -0.08 -1.12 9.66 -39.61 -0.38 -1.50 16 10 C -0.10 -1.66 5.41 -104.47 -0.56 -2.23 16 11 C 0.11 2.06 5.28 -4.98 -0.03 2.04 16 12 N -0.67 -15.19 6.22 -109.22 -0.68 -15.87 16 13 C 0.21 5.56 2.57 -68.86 -0.18 5.38 16 14 H 0.03 0.95 7.80 -51.93 -0.40 0.54 16 15 C -0.17 -4.18 8.94 37.16 0.33 -3.84 16 16 C -0.49 -14.04 8.84 -34.44 -0.30 -14.35 16 17 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 18 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 19 N -0.90 -26.39 11.32 55.43 0.63 -25.77 16 20 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 24 H 0.22 2.09 7.80 -54.10 -0.42 1.67 16 25 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 26 H 0.08 0.95 7.66 -51.93 -0.40 0.55 16 27 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.58 8.04 -52.48 -0.42 1.16 16 31 H 0.02 0.47 7.30 -51.93 -0.38 0.09 16 32 H 0.07 1.57 7.77 -51.93 -0.40 1.16 16 33 H 0.32 6.98 8.47 -39.29 -0.33 6.65 16 34 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 35 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 36 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -31.93 320.38 -7.82 -39.75 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.00 Total: 5.38 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.39 Total: -20.26 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.05 Total: -41.64 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.18 Total: -5.16 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.93 -7.82 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.545 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds