Wall clock time and date at job start Sun Mar 29 2020 23:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48189 * 110.99830 * 2 1 4 4 C 1.52858 * 85.78546 * 223.14962 * 3 2 1 5 5 C 1.48180 * 111.00362 * 260.33323 * 2 1 3 6 6 C 1.52861 * 121.44411 * 257.25098 * 4 3 2 7 7 N 1.48181 * 85.78933 * 257.25934 * 6 4 3 8 8 C 1.39081 * 111.00000 * 223.15057 * 7 6 4 9 9 C 1.38737 * 119.65945 * 279.39028 * 8 7 6 10 10 C 1.40777 * 118.67056 * 179.75790 * 9 8 7 11 11 C 1.41557 * 120.99580 * 180.25610 * 10 9 8 12 12 H 1.07991 * 120.00116 * 203.51829 * 11 10 9 13 13 C 1.40028 * 119.99665 * 23.51698 * 11 10 9 14 14 N 1.30748 * 120.00178 * 17.01801 * 13 11 10 15 15 Si 1.86794 * 120.00015 * 197.01174 * 13 11 10 16 16 H 1.48501 * 109.47071 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47252 * 120.00495 * 15 13 11 18 18 H 1.48502 * 109.47335 * 240.00398 * 15 13 11 19 19 C 1.41180 * 118.01430 * 0.50077 * 10 9 8 20 20 C 1.36562 * 119.14844 * 359.75631 * 19 10 9 21 21 N 1.32100 * 121.26223 * 359.97438 * 20 19 10 22 22 C 1.48189 * 91.02145 * 336.15341 * 7 6 4 23 23 H 1.09004 * 109.47307 * 60.00386 * 1 2 3 24 24 H 1.09002 * 109.46924 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47804 * 299.99997 * 1 2 3 26 26 H 1.08996 * 113.81995 * 108.93324 * 3 2 1 27 27 H 1.08996 * 113.92957 * 337.37399 * 3 2 1 28 28 H 1.09001 * 113.81692 * 22.63399 * 5 2 1 29 29 H 1.08994 * 113.82550 * 251.06574 * 5 2 1 30 30 H 1.09001 * 113.81948 * 11.47099 * 6 4 3 31 31 H 1.08994 * 113.81951 * 143.03978 * 6 4 3 32 32 H 1.07998 * 120.66389 * 0.02562 * 9 8 7 33 33 H 0.96996 * 120.00064 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.42912 * 179.77814 * 19 10 9 35 35 H 1.07993 * 119.37021 * 180.02562 * 20 19 10 36 36 H 1.09002 * 113.81939 * 269.62757 * 22 7 6 37 37 H 1.09001 * 113.82098 * 138.06834 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0000 1.3835 0.0000 4 6 2.9980 0.8801 -1.0426 5 6 2.0001 -0.2323 -1.3637 6 6 4.4481 0.5681 -0.6729 7 7 4.7750 1.8651 -1.3107 8 6 5.9116 1.7575 -2.1050 9 6 7.1672 1.8018 -1.5164 10 6 8.3034 1.6858 -2.3394 11 6 9.6077 1.7192 -1.7903 12 1 10.4459 2.0081 -2.4068 13 6 9.8110 1.3775 -0.4476 14 7 8.8896 0.7195 0.2063 15 14 11.3987 1.8617 0.4092 16 1 12.2714 2.5944 -0.5429 17 1 11.0886 2.7357 1.5691 18 1 12.0979 0.6402 0.8829 19 6 8.1034 1.5404 -3.7293 20 6 6.8287 1.5129 -4.2186 21 7 5.7842 1.6190 -3.4169 22 6 3.5442 1.8009 -2.1335 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3635 0.5138 0.8899 26 1 2.4598 1.6785 0.9432 27 1 1.2999 2.1257 -0.3833 28 1 1.2986 0.0216 -2.1584 29 1 2.4599 -1.2115 -1.4962 30 1 4.6338 0.5465 0.4009 31 1 4.8596 -0.2955 -1.1953 32 1 7.2707 1.9186 -0.4477 33 1 9.0303 0.4832 1.1365 34 1 8.9475 1.4518 -4.3971 35 1 6.6716 1.4015 -5.2812 36 1 3.6833 1.3088 -3.0961 37 1 3.0169 2.7517 -2.2118 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158865708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:25 Heat of formation + Delta-G solvation = 111.946185 kcal Electronic energy + Delta-G solvation = -19070.999031 eV Core-core repulsion = 16236.521462 eV Total energy + Delta-G solvation = -2834.477569 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96149 -38.62963 -36.66056 -34.06389 -31.01146 -30.42085 -28.53302 -26.36112 -26.15561 -25.46133 -24.89328 -21.84153 -21.58159 -19.99002 -17.93915 -17.48911 -16.09254 -15.64259 -15.51098 -15.24847 -14.65742 -14.35612 -14.15022 -13.83841 -13.27333 -13.07876 -12.78741 -12.59561 -12.22866 -12.02841 -11.64643 -11.43062 -11.29781 -11.19884 -10.90881 -10.61492 -10.40113 -10.29690 -10.21354 -9.80417 -9.43428 -8.91760 -8.73935 -8.08312 -7.95496 -7.19218 -6.83964 -4.61109 2.66298 2.80801 3.02702 3.07857 3.20788 3.84898 3.91697 4.29404 4.56734 4.60536 4.87993 5.06242 5.15559 5.32839 5.45984 5.56391 5.59195 5.63381 5.74990 5.87248 5.88009 6.01861 6.12957 6.25275 6.26009 6.30864 6.43606 6.59046 6.70600 6.90231 6.94819 7.05653 7.16296 7.29548 7.51063 7.64134 7.91094 8.21906 8.56082 8.73534 8.75516 9.52916 10.05215 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.005237 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.131646 B = 5344.807732 C = 6121.376100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.484 5.484 3 C 0.032 3.968 4 C -0.123 4.123 5 C 0.015 3.985 6 C 0.060 3.940 7 N -0.430 5.430 8 C 0.249 3.751 9 C -0.201 4.201 10 C 0.133 3.867 11 C -0.453 4.453 12 H 0.082 0.918 13 C 0.078 3.922 14 N -0.781 5.781 15 Si 0.911 3.089 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.279 4.279 20 C 0.113 3.887 21 N -0.601 5.601 22 C 0.031 3.969 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.283 0.717 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 -0.878 0.606 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.206 5.206 3 C -0.096 4.096 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.067 4.067 7 N -0.149 5.149 8 C 0.025 3.975 9 C -0.225 4.225 10 C 0.124 3.876 11 C -0.484 4.484 12 H 0.100 0.900 13 C -0.142 4.142 14 N -0.406 5.406 15 Si 0.735 3.265 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.303 4.303 20 C -0.041 4.041 21 N -0.320 5.320 22 C -0.098 4.098 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.701 -0.892 1.434 10.833 hybrid contribution 1.205 0.093 -0.388 1.270 sum -9.495 -0.800 1.045 9.586 Atomic orbital electron populations 1.22850 0.90228 1.02064 1.00786 1.68519 1.08384 1.18933 1.24799 1.23614 0.95622 0.90721 0.99648 1.23387 0.94764 0.96752 0.97544 1.23852 0.96774 1.00093 0.90715 1.23388 0.90595 0.91570 1.01122 1.66226 1.00228 1.28008 1.20485 1.19934 0.91255 0.97390 0.88897 1.21698 0.89876 1.09557 1.01369 1.17758 0.93469 0.85756 0.90604 1.19645 0.93822 1.39915 0.95048 0.89966 1.25978 0.98581 0.92186 0.97479 1.69779 1.34038 1.25618 1.11117 0.86214 0.81336 0.79320 0.79642 1.18264 1.19486 1.19820 1.21586 0.96701 1.15488 0.96521 1.21340 0.88773 0.96869 0.97133 1.67083 1.34724 1.25638 1.04571 1.23607 0.90411 0.98923 0.96842 0.94932 0.91433 0.91582 0.88899 0.91110 0.91032 0.89299 0.89156 0.90856 0.85241 0.90571 0.88201 0.86373 0.88095 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.64 60.06 0.58 0.48 16 2 N -0.48 -6.38 6.55 -252.77 -1.66 -8.04 16 3 C 0.03 0.43 7.77 -3.19 -0.02 0.41 16 4 C -0.12 -1.89 1.40 -155.34 -0.22 -2.10 16 5 C 0.01 0.20 7.75 -3.19 -0.02 0.17 16 6 C 0.06 1.13 7.66 -3.19 -0.02 1.10 16 7 N -0.43 -9.00 6.24 -182.51 -1.14 -10.14 16 8 C 0.25 6.06 5.89 -154.98 -0.91 5.14 16 9 C -0.20 -5.31 8.63 -38.44 -0.33 -5.64 16 10 C 0.13 3.54 5.61 -106.56 -0.60 2.94 16 11 C -0.45 -11.84 9.12 -37.65 -0.34 -12.18 16 12 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 13 C 0.08 1.91 5.20 -17.34 -0.09 1.82 16 14 N -0.78 -19.74 10.91 55.55 0.61 -19.14 16 15 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 16 16 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 C -0.28 -6.82 9.85 -39.07 -0.38 -7.21 16 20 C 0.11 2.59 11.10 -18.04 -0.20 2.39 16 21 N -0.60 -14.27 8.17 -12.82 -0.10 -14.37 16 22 C 0.03 0.55 7.44 -3.19 -0.02 0.53 16 23 H 0.03 0.31 7.63 -51.93 -0.40 -0.08 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 28 H 0.07 0.85 7.63 -51.93 -0.40 0.45 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 32 H 0.13 3.57 6.19 -52.49 -0.32 3.24 16 33 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 34 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.10 1.91 6.66 -51.93 -0.35 1.56 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 304.95 15.07 4.60 4.60 Total: -1.00 -27.84 304.95 -10.54 -38.38 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.22 Total: 7.67 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.60 Total: -12.15 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -2.29 Total: -51.69 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.84 -10.54 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158865708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.324 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds