Wall clock time and date at job start Mon Mar 30 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.87226 * 2 1 4 4 C 1.55135 * 110.99313 * 123.84410 * 2 1 3 5 5 C 1.54314 * 103.02124 * 153.74547 * 4 2 1 6 6 H 1.08999 * 109.89090 * 97.28481 * 5 4 2 7 7 C 1.50701 * 109.89012 * 218.31400 * 5 4 2 8 8 C 1.38230 * 120.00388 * 53.85127 * 7 5 4 9 9 C 1.38227 * 120.00424 * 179.78794 * 8 7 5 10 10 C 1.38234 * 119.99875 * 0.44001 * 9 8 7 11 11 C 1.38243 * 119.99864 * 359.81172 * 10 9 8 12 12 C 1.38225 * 119.99864 * 359.97438 * 11 10 9 13 13 N 1.47444 * 107.23273 * 337.71750 * 5 4 2 14 14 C 1.46902 * 111.00336 * 236.74149 * 13 5 4 15 15 C 1.52997 * 109.47222 * 195.88727 * 14 13 5 16 16 C 1.50696 * 109.46990 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00552 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00190 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00324 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46965 * 60.00229 * 20 18 16 22 22 H 1.48500 * 109.46867 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.46764 * 300.00031 * 20 18 16 24 24 C 1.47892 * 108.58527 * 359.04327 * 13 5 4 25 25 H 1.09007 * 109.47349 * 299.29626 * 1 2 3 26 26 H 1.08994 * 109.47315 * 59.29526 * 1 2 3 27 27 H 1.09003 * 109.47314 * 179.30269 * 1 2 3 28 28 H 1.09002 * 110.71045 * 272.13204 * 4 2 1 29 29 H 1.08999 * 110.70395 * 35.18895 * 4 2 1 30 30 H 1.08007 * 119.99414 * 359.97438 * 8 7 5 31 31 H 1.07998 * 120.00530 * 180.26940 * 9 8 7 32 32 H 1.08004 * 120.00705 * 179.83084 * 10 9 8 33 33 H 1.08002 * 119.99941 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.99805 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.46715 * 315.88960 * 14 13 5 36 36 H 1.08997 * 109.46760 * 75.88274 * 14 13 5 37 37 H 1.09000 * 109.47399 * 300.00294 * 15 14 13 38 38 H 1.09001 * 109.46996 * 59.99730 * 15 14 13 39 39 H 0.96997 * 119.99778 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.35391 * 265.23064 * 24 13 5 41 41 H 1.09001 * 110.41016 * 142.86982 * 24 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0858 -0.8067 1.2030 5 6 3.4692 -1.2708 0.7010 6 1 4.2424 -0.5956 1.0675 7 6 3.7443 -2.6730 1.1796 8 6 2.8346 -3.6818 0.9235 9 6 3.0890 -4.9689 1.3587 10 6 4.2490 -5.2454 2.0579 11 6 5.1563 -4.2355 2.3186 12 6 4.9039 -2.9494 1.8795 13 7 3.4313 -1.2422 -0.7727 14 6 3.7612 -2.5593 -1.3335 15 6 4.1000 -2.4111 -2.8181 16 6 4.4390 -3.7621 -3.3932 17 1 4.4148 -4.6389 -2.7631 18 6 4.7791 -3.8792 -4.7243 19 7 4.8081 -2.8117 -5.4919 20 14 5.1987 -5.5540 -5.4374 21 1 4.0348 -6.4633 -5.2832 22 1 5.5277 -5.4101 -6.8783 23 1 6.3676 -6.1197 -4.7173 24 6 2.0848 -0.8055 -1.2012 25 1 -0.3634 0.5029 0.8963 26 1 -0.3633 0.5247 -0.8835 27 1 -0.3634 -1.0276 -0.0125 28 1 2.1884 -0.1684 2.0806 29 1 1.4459 -1.6613 1.4225 30 1 1.9264 -3.4649 0.3807 31 1 2.3803 -5.7579 1.1548 32 1 4.4466 -6.2505 2.4004 33 1 6.0624 -4.4515 2.8653 34 1 5.6130 -2.1605 2.0828 35 1 4.6189 -2.9748 -0.8047 36 1 2.9067 -3.2266 -1.2206 37 1 3.2422 -1.9956 -3.3469 38 1 4.9544 -1.7438 -2.9309 39 1 5.0470 -2.8941 -6.4284 40 1 1.4523 -1.6698 -1.4031 41 1 2.1544 -0.1703 -2.0843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285670708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:41 Heat of formation + Delta-G solvation = 20.540930 kcal Electronic energy + Delta-G solvation = -19730.191524 eV Core-core repulsion = 16995.290669 eV Total energy + Delta-G solvation = -2734.900855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23036 -37.78769 -34.00838 -32.72700 -31.57040 -30.69481 -29.33649 -27.81254 -25.80134 -24.15305 -22.62127 -22.20819 -20.67288 -20.04127 -19.29237 -16.53756 -16.43033 -15.72744 -15.17766 -14.77432 -14.44848 -14.20939 -13.96596 -13.36796 -13.27241 -12.95983 -12.84429 -12.35374 -12.26651 -12.07522 -11.78225 -11.63842 -11.17469 -10.98775 -10.93676 -10.81170 -10.52766 -10.47701 -10.44891 -10.37600 -9.72245 -9.33996 -9.08585 -8.69088 -8.36119 -8.27891 -7.63005 -5.93949 -3.95822 1.56381 1.63723 3.36098 3.40168 3.42889 3.95969 4.46385 4.64728 4.73528 4.83726 4.95258 5.12239 5.16728 5.24168 5.29850 5.41743 5.50483 5.59715 5.65986 5.70343 5.77970 5.83146 5.93941 6.04851 6.09377 6.15684 6.19396 6.26175 6.30032 6.48659 6.51249 6.56977 6.67130 6.71892 6.86811 7.10114 7.21378 7.55213 7.57485 7.83822 7.97697 8.15648 8.51047 9.11636 9.67273 11.17507 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.007066 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.944810 B = 3961.686568 C = 5257.046723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.081 0.919 4 C -0.129 4.129 5 C 0.107 3.893 6 H 0.086 0.914 7 C -0.083 4.083 8 C -0.103 4.103 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.122 4.122 12 C -0.113 4.113 13 N -0.518 5.518 14 C 0.057 3.943 15 C 0.031 3.969 16 C -0.519 4.519 17 H 0.052 0.948 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.050 3.950 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.013 0.987 38 H 0.022 0.978 39 H 0.260 0.740 40 H 0.045 0.955 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 1.965 15.970 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.100 0.900 4 C -0.167 4.167 5 C -0.001 4.001 6 H 0.104 0.896 7 C -0.084 4.084 8 C -0.121 4.121 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.131 4.131 13 N -0.241 5.241 14 C -0.070 4.070 15 C -0.007 4.007 16 C -0.557 4.557 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.372 2.379 15.577 16.648 hybrid contribution -0.226 -1.617 -0.330 1.666 sum -5.598 0.762 15.247 16.260 Atomic orbital electron populations 1.21701 0.94786 1.01758 1.01511 1.22334 0.95276 0.99697 0.95053 0.90046 1.22969 0.95914 0.99839 0.98003 1.21518 0.97205 0.91832 0.89561 0.89640 1.20176 0.94748 0.96235 0.97238 1.20977 0.99452 0.92966 0.98726 1.21057 0.97701 0.96497 0.98539 1.21060 0.94736 0.98887 0.99692 1.21056 0.99146 0.93163 1.00662 1.21000 0.96667 0.96853 0.98627 1.63982 1.26242 1.29611 1.04259 1.22781 0.98588 0.86523 0.99086 1.19044 0.97057 0.96687 0.87909 1.21159 1.46197 0.93760 0.94632 0.92999 1.24978 0.95688 0.96391 0.97191 1.69969 1.48840 1.28265 1.06250 0.86698 0.78892 0.84662 0.77990 1.20341 1.21272 1.20261 1.23128 0.88974 0.98242 0.97416 0.92824 0.92408 0.92776 0.91247 0.91204 0.86524 0.86398 0.86549 0.86443 0.86245 0.91845 0.95271 0.96828 0.95998 0.93034 0.93715 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.28 37.16 0.34 -1.17 16 2 C -0.10 -1.35 3.63 -88.49 -0.32 -1.67 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -1.64 5.80 -24.91 -0.14 -1.78 16 5 C 0.11 1.64 3.64 -67.88 -0.25 1.39 16 6 H 0.09 1.26 7.91 -51.93 -0.41 0.85 16 7 C -0.08 -1.28 2.98 -104.62 -0.31 -1.59 16 8 C -0.10 -1.59 6.30 -39.59 -0.25 -1.84 16 9 C -0.12 -1.72 10.05 -39.59 -0.40 -2.12 16 10 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 11 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 12 C -0.11 -1.63 9.58 -39.59 -0.38 -2.01 16 13 N -0.52 -9.67 5.12 -224.69 -1.15 -10.82 16 14 C 0.06 1.24 3.36 -3.82 -0.01 1.23 16 15 C 0.03 0.83 5.09 -27.89 -0.14 0.68 16 16 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 20 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.05 0.84 5.55 -2.27 -0.01 0.83 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 30 H 0.12 1.81 6.75 -52.48 -0.35 1.45 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.52 7.96 -52.49 -0.42 1.11 16 35 H 0.06 1.45 6.48 -51.93 -0.34 1.12 16 36 H 0.03 0.64 5.29 -51.93 -0.27 0.36 16 37 H 0.01 0.38 7.70 -51.93 -0.40 -0.02 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.04 0.78 7.41 -51.93 -0.38 0.39 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -31.21 322.47 -10.34 -41.55 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.69 Total: 0.02 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -3.08 Total: -26.00 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.41 Total: -37.59 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.21 -10.34 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285670708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.094 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds