Wall clock time and date at job start Mon Mar 30 2020 00:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.87226 * 2 1 4 4 C 1.55135 * 110.99313 * 123.84410 * 2 1 3 5 5 C 1.54314 * 103.02124 * 153.74547 * 4 2 1 6 6 H 1.08999 * 109.89090 * 97.28481 * 5 4 2 7 7 C 1.50701 * 109.89012 * 218.31400 * 5 4 2 8 8 C 1.38230 * 120.00388 * 53.85127 * 7 5 4 9 9 C 1.38227 * 120.00424 * 179.78794 * 8 7 5 10 10 C 1.38234 * 119.99875 * 0.44001 * 9 8 7 11 11 C 1.38243 * 119.99864 * 359.81172 * 10 9 8 12 12 C 1.38225 * 119.99864 * 359.97438 * 11 10 9 13 13 N 1.47444 * 107.23273 * 337.71750 * 5 4 2 14 14 C 1.46902 * 111.00336 * 236.74149 * 13 5 4 15 15 C 1.52997 * 109.47222 * 195.88727 * 14 13 5 16 16 C 1.50696 * 109.46990 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00552 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00190 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00324 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46965 * 60.00229 * 20 18 16 22 22 H 1.48500 * 109.46867 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.46764 * 300.00031 * 20 18 16 24 24 C 1.47892 * 108.58527 * 359.04327 * 13 5 4 25 25 H 1.09007 * 109.47349 * 299.29626 * 1 2 3 26 26 H 1.08994 * 109.47315 * 59.29526 * 1 2 3 27 27 H 1.09003 * 109.47314 * 179.30269 * 1 2 3 28 28 H 1.09002 * 110.71045 * 272.13204 * 4 2 1 29 29 H 1.08999 * 110.70395 * 35.18895 * 4 2 1 30 30 H 1.08007 * 119.99414 * 359.97438 * 8 7 5 31 31 H 1.07998 * 120.00530 * 180.26940 * 9 8 7 32 32 H 1.08004 * 120.00705 * 179.83084 * 10 9 8 33 33 H 1.08002 * 119.99941 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.99805 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.46715 * 315.88960 * 14 13 5 36 36 H 1.08997 * 109.46760 * 75.88274 * 14 13 5 37 37 H 1.09000 * 109.47399 * 300.00294 * 15 14 13 38 38 H 1.09001 * 109.46996 * 59.99730 * 15 14 13 39 39 H 0.96997 * 119.99778 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.35391 * 265.23064 * 24 13 5 41 41 H 1.09001 * 110.41016 * 142.86982 * 24 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0858 -0.8067 1.2030 5 6 3.4692 -1.2708 0.7010 6 1 4.2424 -0.5956 1.0675 7 6 3.7443 -2.6730 1.1796 8 6 2.8346 -3.6818 0.9235 9 6 3.0890 -4.9689 1.3587 10 6 4.2490 -5.2454 2.0579 11 6 5.1563 -4.2355 2.3186 12 6 4.9039 -2.9494 1.8795 13 7 3.4313 -1.2422 -0.7727 14 6 3.7612 -2.5593 -1.3335 15 6 4.1000 -2.4111 -2.8181 16 6 4.4390 -3.7621 -3.3932 17 1 4.4148 -4.6389 -2.7631 18 6 4.7791 -3.8792 -4.7243 19 7 4.8081 -2.8117 -5.4919 20 14 5.1987 -5.5540 -5.4374 21 1 4.0348 -6.4633 -5.2832 22 1 5.5277 -5.4101 -6.8783 23 1 6.3676 -6.1197 -4.7173 24 6 2.0848 -0.8055 -1.2012 25 1 -0.3634 0.5029 0.8963 26 1 -0.3633 0.5247 -0.8835 27 1 -0.3634 -1.0276 -0.0125 28 1 2.1884 -0.1684 2.0806 29 1 1.4459 -1.6613 1.4225 30 1 1.9264 -3.4649 0.3807 31 1 2.3803 -5.7579 1.1548 32 1 4.4466 -6.2505 2.4004 33 1 6.0624 -4.4515 2.8653 34 1 5.6130 -2.1605 2.0828 35 1 4.6189 -2.9748 -0.8047 36 1 2.9067 -3.2266 -1.2206 37 1 3.2422 -1.9956 -3.3469 38 1 4.9544 -1.7438 -2.9309 39 1 5.0470 -2.8941 -6.4284 40 1 1.4523 -1.6698 -1.4031 41 1 2.1544 -0.1703 -2.0843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285670708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:40 Heat of formation + Delta-G solvation = 2.789927 kcal Electronic energy + Delta-G solvation = -19730.961265 eV Core-core repulsion = 16995.290669 eV Total energy + Delta-G solvation = -2735.670596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46372 -38.94404 -35.82776 -34.35115 -33.02661 -31.78452 -30.93699 -29.16808 -27.19401 -25.87028 -23.98980 -23.35073 -22.30719 -21.18470 -20.66829 -18.55988 -17.66237 -17.06692 -16.50425 -16.41717 -15.93918 -15.60658 -15.35329 -14.69365 -14.41953 -14.21418 -13.96272 -13.93105 -13.87752 -13.40641 -13.21944 -12.88128 -12.83865 -12.72331 -12.44365 -12.17259 -12.02951 -11.76081 -11.61595 -11.49773 -11.46227 -11.34880 -11.22053 -10.56275 -9.81264 -9.55244 -9.08914 -8.20972 -6.32671 0.46021 0.53799 1.36855 1.40670 1.48659 2.38574 2.83663 3.11701 3.25960 3.60572 3.71479 3.81271 4.02596 4.11392 4.19236 4.27461 4.42374 4.47279 4.53815 4.62449 4.64021 4.67072 4.72170 4.84953 4.87262 4.95715 5.04461 5.10783 5.12908 5.16498 5.23555 5.28965 5.43191 5.46278 5.56957 5.64291 5.65733 5.72554 5.79323 6.09573 6.15222 6.23535 6.34639 6.83939 7.36183 8.91187 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.007066 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.944810 B = 3961.686568 C = 5257.046723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.089 0.911 4 C -0.119 4.119 5 C 0.104 3.896 6 H 0.092 0.908 7 C -0.099 4.099 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.129 4.129 11 C -0.125 4.125 12 C -0.125 4.125 13 N -0.536 5.536 14 C 0.086 3.914 15 C 0.039 3.961 16 C -0.542 4.542 17 H 0.055 0.945 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.046 3.954 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.054 0.946 36 H 0.029 0.971 37 H -0.013 1.013 38 H -0.014 1.014 39 H 0.264 0.736 40 H 0.033 0.967 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 0.854 17.650 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.107 0.893 4 C -0.157 4.157 5 C -0.003 4.003 6 H 0.110 0.890 7 C -0.100 4.100 8 C -0.138 4.138 9 C -0.150 4.150 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.144 4.144 13 N -0.259 5.259 14 C -0.042 4.042 15 C 0.002 3.998 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.081 4.081 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.006 0.994 38 H 0.004 0.996 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.464 1.276 17.280 18.168 hybrid contribution -0.172 -1.235 -0.840 1.504 sum -5.636 0.041 16.440 17.379 Atomic orbital electron populations 1.21678 0.92898 1.01952 1.02786 1.22292 0.96723 0.99260 0.92923 0.89300 1.22929 0.94067 1.00160 0.98538 1.21599 0.99144 0.92486 0.87076 0.89028 1.20245 0.95463 0.96103 0.98182 1.21026 0.99470 0.93812 0.99528 1.21344 0.98619 0.96426 0.98589 1.21430 0.94120 1.00243 0.98885 1.21428 1.00020 0.92655 1.00180 1.21277 0.96527 0.97979 0.98587 1.63808 1.27669 1.27481 1.06946 1.22260 0.98107 0.88323 0.95471 1.18883 0.94389 0.95154 0.91404 1.21534 1.46666 0.94521 0.95370 0.92673 1.25959 0.95170 1.00860 0.97541 1.70112 1.49415 1.30891 1.06705 0.85520 0.79135 0.79259 0.77272 1.19078 1.20503 1.19191 1.23134 0.88244 0.98066 0.98693 0.90491 0.92212 0.93120 0.88644 0.91084 0.87409 0.84961 0.83939 0.83812 0.84970 0.92796 0.95318 0.99431 0.99564 0.92726 0.94890 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.28 71.98 0.67 -2.04 16 2 C -0.09 -2.30 3.63 -9.41 -0.03 -2.33 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.12 -2.82 5.80 31.77 0.18 -2.63 16 5 C 0.10 3.14 3.64 44.51 0.16 3.31 16 6 H 0.09 2.62 7.91 -2.39 -0.02 2.60 16 7 C -0.10 -3.00 2.98 -19.87 -0.06 -3.06 16 8 C -0.12 -3.68 6.30 22.27 0.14 -3.54 16 9 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 10 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 11 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 12 C -0.13 -3.45 9.58 22.27 0.21 -3.23 16 13 N -0.54 -20.59 5.12 -864.79 -4.43 -25.02 16 14 C 0.09 3.90 3.36 86.30 0.29 4.19 16 15 C 0.04 2.23 5.09 29.85 0.15 2.38 16 16 C -0.54 -32.48 9.11 25.60 0.23 -32.25 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -58.69 13.29 21.45 0.28 -58.40 16 20 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.05 1.60 5.55 86.76 0.48 2.09 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.69 6.55 -2.39 -0.02 1.67 16 30 H 0.11 3.40 6.75 -2.91 -0.02 3.38 16 31 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.13 3.18 7.96 -2.91 -0.02 3.16 16 35 H 0.05 2.53 6.48 -2.39 -0.02 2.52 16 36 H 0.03 1.30 5.29 -2.39 -0.01 1.29 16 37 H -0.01 -0.77 7.70 -2.39 -0.02 -0.79 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.03 1.20 7.41 -2.39 -0.02 1.18 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.83 322.47 2.43 -66.40 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.98 Total: 15.13 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.56 Total: -45.72 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -4.14 Total: -83.42 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.83 2.43 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285670708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.189 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds