Wall clock time and date at job start Mon Mar 30 2020 00:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.09005 * 109.46596 * 177.91239 * 3 2 1 5 5 C 1.50705 * 109.46969 * 57.91997 * 3 2 1 6 6 H 1.08004 * 119.99866 * 239.99386 * 5 3 2 7 7 C 1.37875 * 120.00127 * 59.99106 * 5 3 2 8 8 N 1.31512 * 120.00269 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99692 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46976 * 60.00819 * 9 7 5 11 11 H 1.48506 * 109.46770 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47781 * 300.00675 * 9 7 5 13 13 N 1.46894 * 109.47834 * 297.91610 * 3 2 1 14 14 C 1.46899 * 110.99829 * 273.73939 * 13 3 2 15 15 C 1.53000 * 109.47442 * 175.01646 * 14 13 3 16 16 C 1.54348 * 110.82086 * 287.97120 * 15 14 13 17 17 C 1.51367 * 105.16861 * 215.42470 * 16 15 14 18 18 C 1.38496 * 130.39037 * 197.19111 * 17 16 15 19 19 C 1.38096 * 120.21641 * 179.97438 * 18 17 16 20 20 C 1.38255 * 119.93659 * 359.97438 * 19 18 17 21 21 C 1.38100 * 119.93343 * 0.02562 * 20 19 18 22 22 C 1.38213 * 109.76139 * 17.18430 * 17 16 15 23 23 C 1.51372 * 109.75607 * 0.02562 * 22 17 16 24 24 H 1.08999 * 109.47160 * 174.41901 * 1 2 3 25 25 H 1.08999 * 109.47293 * 294.42551 * 1 2 3 26 26 H 1.09002 * 109.46910 * 54.42322 * 1 2 3 27 27 H 1.09004 * 109.46929 * 240.00439 * 2 1 3 28 28 H 1.08997 * 109.46452 * 120.00301 * 2 1 3 29 29 H 0.96998 * 120.00275 * 179.97438 * 8 7 5 30 30 H 1.00891 * 111.00152 * 149.78066 * 13 3 2 31 31 H 1.09001 * 109.47083 * 295.01760 * 14 13 3 32 32 H 1.08997 * 109.47661 * 55.01392 * 14 13 3 33 33 H 1.09009 * 110.72707 * 51.59007 * 15 14 13 34 34 H 1.09002 * 110.30334 * 334.34490 * 16 15 14 35 35 H 1.08998 * 110.30379 * 96.49899 * 16 15 14 36 36 H 1.08003 * 119.89220 * 359.97438 * 18 17 16 37 37 H 1.08009 * 120.03381 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.03494 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.89423 * 180.02562 * 21 20 19 40 40 H 1.09003 * 110.30083 * 223.88199 * 23 22 17 41 41 H 1.08997 * 110.38645 * 101.77956 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0374 5 6 1.4960 2.1676 1.2039 6 1 0.8790 3.0444 1.0730 7 6 1.7857 1.7117 2.4724 8 7 2.5373 0.6444 2.6319 9 14 1.1119 2.6110 3.9646 10 1 -0.3723 2.6113 3.9139 11 1 1.5652 1.9259 5.2018 12 1 1.6074 4.0108 3.9646 13 7 1.5920 2.1204 -1.2237 14 6 2.5303 1.8854 -2.3293 15 6 1.9698 2.5002 -3.6134 16 6 0.7740 1.6778 -4.1389 17 6 0.8804 1.7437 -5.6473 18 6 -0.0609 1.4717 -6.6261 19 6 0.2667 1.6033 -7.9612 20 6 1.5381 2.0083 -8.3229 21 6 2.4781 2.2800 -7.3484 22 6 2.1517 2.1478 -6.0090 23 6 2.9869 2.3805 -4.7682 24 1 -0.3633 -1.0228 -0.0999 25 1 -0.3634 0.4249 0.9357 26 1 -0.3633 0.5979 -0.8359 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 2.7415 0.3239 3.5243 30 1 1.4623 3.1080 -1.0632 31 1 3.4903 2.3455 -2.0951 32 1 2.6660 0.8130 -2.4691 33 1 1.6873 3.5405 -3.4517 34 1 0.8472 0.6446 -3.7993 35 1 -0.1648 2.1205 -3.8062 36 1 -1.0545 1.1556 -6.3444 37 1 -0.4696 1.3900 -8.7221 38 1 1.7962 2.1114 -9.3666 39 1 3.4710 2.5968 -7.6317 40 1 3.5590 3.3032 -4.8650 41 1 3.6564 1.5374 -4.5975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577111977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:18 Heat of formation + Delta-G solvation = 6.679980 kcal Electronic energy + Delta-G solvation = -19014.438122 eV Core-core repulsion = 16278.936211 eV Total energy + Delta-G solvation = -2735.501911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05116 -36.88560 -35.30291 -32.46641 -31.35994 -30.78716 -28.92358 -27.13727 -26.26505 -24.01589 -23.02912 -21.63462 -20.84135 -19.97647 -18.96106 -16.36463 -16.21822 -15.71702 -15.01349 -14.82368 -14.58959 -14.10236 -13.52172 -13.17558 -13.06582 -12.93464 -12.71387 -12.60846 -12.07521 -11.99436 -11.40166 -11.24742 -11.08427 -10.90890 -10.79710 -10.69417 -10.67012 -10.51380 -10.30731 -9.94705 -9.65366 -9.32906 -8.78747 -8.76470 -8.45390 -8.42020 -7.19676 -6.00602 -4.05907 1.39078 1.41398 3.31161 3.36055 3.38595 3.78717 4.39647 4.48345 4.75235 4.97524 5.03841 5.08607 5.18989 5.30821 5.38600 5.52578 5.65308 5.73407 5.88955 5.89570 5.98576 6.02035 6.17602 6.21563 6.34323 6.45198 6.46592 6.50772 6.55361 6.67383 6.74236 6.76928 6.88015 7.04143 7.25669 7.34256 7.52654 7.75834 7.81402 7.87007 8.28307 8.41537 8.69884 9.03705 9.58810 11.05411 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042771 B = 0.003868 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.485264 B = 7237.635958 C = 7419.476631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.070 3.930 15 C -0.080 4.080 16 C -0.066 4.066 17 C -0.089 4.089 18 C -0.111 4.111 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.096 4.096 23 C -0.080 4.080 24 H 0.011 0.989 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.009 0.991 28 H 0.084 0.916 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 2.023 -17.389 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.060 4.060 15 C -0.099 4.099 16 C -0.103 4.103 17 C -0.089 4.089 18 C -0.129 4.129 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.129 4.129 22 C -0.096 4.096 23 C -0.117 4.117 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.648 1.383 -17.402 17.535 hybrid contribution 0.421 0.942 1.026 1.455 sum -1.227 2.325 -16.376 16.586 Atomic orbital electron populations 1.21435 0.97528 0.97049 1.01572 1.21413 0.95064 0.98265 0.99187 1.19100 0.93212 0.91611 0.85238 0.98333 1.21159 1.31629 1.11931 0.90408 0.92390 1.24882 0.95107 0.95019 0.98837 1.69877 1.37386 1.23133 1.22419 0.86651 0.79450 0.79733 0.82103 1.20214 1.21384 1.20419 1.60636 1.47427 1.16052 1.07393 1.21912 0.93602 0.99796 0.90727 1.21864 0.94298 0.99809 0.93934 1.21021 0.99501 1.01447 0.88307 1.20918 0.93923 0.97588 0.96518 1.20670 0.99156 1.00888 0.92234 1.20996 0.96692 1.00813 0.95782 1.20966 0.93796 1.01027 0.98882 1.20616 0.99422 1.01154 0.91722 1.20694 0.95680 0.99093 0.94105 1.21133 0.97494 1.02039 0.91047 0.96972 0.93018 0.93384 0.97250 0.89793 0.92941 0.85366 0.96233 0.91680 0.90496 0.89765 0.90493 0.86356 0.86269 0.86310 0.86580 0.91061 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.46 37.16 0.35 -2.30 16 2 C -0.10 -2.42 5.58 -26.73 -0.15 -2.57 16 3 C 0.22 5.27 2.30 -68.87 -0.16 5.11 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.58 7.33 -34.44 -0.25 -13.83 16 6 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.06 11.34 55.43 0.63 -24.43 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.79 5.44 -107.95 -0.59 -14.37 16 14 C 0.07 1.20 4.74 -3.82 -0.02 1.18 16 15 C -0.08 -1.14 3.28 -89.20 -0.29 -1.43 16 16 C -0.07 -0.94 6.25 -26.85 -0.17 -1.11 16 17 C -0.09 -1.21 6.14 -104.21 -0.64 -1.85 16 18 C -0.11 -1.36 10.04 -39.54 -0.40 -1.75 16 19 C -0.12 -1.35 10.05 -39.63 -0.40 -1.75 16 20 C -0.13 -1.36 10.05 -39.63 -0.40 -1.76 16 21 C -0.11 -1.28 10.04 -39.54 -0.40 -1.68 16 22 C -0.10 -1.25 6.14 -104.20 -0.64 -1.89 16 23 C -0.08 -1.01 6.32 -26.84 -0.17 -1.18 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.05 1.25 7.37 -51.93 -0.38 0.86 16 26 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 27 H 0.01 0.20 7.43 -51.93 -0.39 -0.18 16 28 H 0.08 2.25 6.13 -51.93 -0.32 1.93 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.33 6.56 8.25 -39.30 -0.32 6.24 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 1.17 7.18 -51.93 -0.37 0.79 16 33 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.08 1.29 7.75 -51.93 -0.40 0.88 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.01 7.89 -51.93 -0.41 0.60 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -27.72 326.84 -10.61 -38.32 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.73 Total: 4.72 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.82 Total: -25.19 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.04 Total: -38.80 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.72 -10.61 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577111977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.004 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds