Wall clock time and date at job start Mon Mar 30 2020 00:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.09005 * 109.46596 * 177.91239 * 3 2 1 5 5 C 1.50705 * 109.46969 * 57.91997 * 3 2 1 6 6 H 1.08004 * 119.99866 * 239.99386 * 5 3 2 7 7 C 1.37875 * 120.00127 * 59.99106 * 5 3 2 8 8 N 1.31512 * 120.00269 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99692 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46976 * 60.00819 * 9 7 5 11 11 H 1.48506 * 109.46770 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47781 * 300.00675 * 9 7 5 13 13 N 1.46894 * 109.47834 * 297.91610 * 3 2 1 14 14 C 1.46899 * 110.99829 * 273.73939 * 13 3 2 15 15 C 1.53000 * 109.47442 * 175.01646 * 14 13 3 16 16 C 1.54348 * 110.82086 * 287.97120 * 15 14 13 17 17 C 1.51367 * 105.16861 * 215.42470 * 16 15 14 18 18 C 1.38496 * 130.39037 * 197.19111 * 17 16 15 19 19 C 1.38096 * 120.21641 * 179.97438 * 18 17 16 20 20 C 1.38255 * 119.93659 * 359.97438 * 19 18 17 21 21 C 1.38100 * 119.93343 * 0.02562 * 20 19 18 22 22 C 1.38213 * 109.76139 * 17.18430 * 17 16 15 23 23 C 1.51372 * 109.75607 * 0.02562 * 22 17 16 24 24 H 1.08999 * 109.47160 * 174.41901 * 1 2 3 25 25 H 1.08999 * 109.47293 * 294.42551 * 1 2 3 26 26 H 1.09002 * 109.46910 * 54.42322 * 1 2 3 27 27 H 1.09004 * 109.46929 * 240.00439 * 2 1 3 28 28 H 1.08997 * 109.46452 * 120.00301 * 2 1 3 29 29 H 0.96998 * 120.00275 * 179.97438 * 8 7 5 30 30 H 1.00891 * 111.00152 * 149.78066 * 13 3 2 31 31 H 1.09001 * 109.47083 * 295.01760 * 14 13 3 32 32 H 1.08997 * 109.47661 * 55.01392 * 14 13 3 33 33 H 1.09009 * 110.72707 * 51.59007 * 15 14 13 34 34 H 1.09002 * 110.30334 * 334.34490 * 16 15 14 35 35 H 1.08998 * 110.30379 * 96.49899 * 16 15 14 36 36 H 1.08003 * 119.89220 * 359.97438 * 18 17 16 37 37 H 1.08009 * 120.03381 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.03494 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.89423 * 180.02562 * 21 20 19 40 40 H 1.09003 * 110.30083 * 223.88199 * 23 22 17 41 41 H 1.08997 * 110.38645 * 101.77956 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0374 5 6 1.4960 2.1676 1.2039 6 1 0.8790 3.0444 1.0730 7 6 1.7857 1.7117 2.4724 8 7 2.5373 0.6444 2.6319 9 14 1.1119 2.6110 3.9646 10 1 -0.3723 2.6113 3.9139 11 1 1.5652 1.9259 5.2018 12 1 1.6074 4.0108 3.9646 13 7 1.5920 2.1204 -1.2237 14 6 2.5303 1.8854 -2.3293 15 6 1.9698 2.5002 -3.6134 16 6 0.7740 1.6778 -4.1389 17 6 0.8804 1.7437 -5.6473 18 6 -0.0609 1.4717 -6.6261 19 6 0.2667 1.6033 -7.9612 20 6 1.5381 2.0083 -8.3229 21 6 2.4781 2.2800 -7.3484 22 6 2.1517 2.1478 -6.0090 23 6 2.9869 2.3805 -4.7682 24 1 -0.3633 -1.0228 -0.0999 25 1 -0.3634 0.4249 0.9357 26 1 -0.3633 0.5979 -0.8359 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 2.7415 0.3239 3.5243 30 1 1.4623 3.1080 -1.0632 31 1 3.4903 2.3455 -2.0951 32 1 2.6660 0.8130 -2.4691 33 1 1.6873 3.5405 -3.4517 34 1 0.8472 0.6446 -3.7993 35 1 -0.1648 2.1205 -3.8062 36 1 -1.0545 1.1556 -6.3444 37 1 -0.4696 1.3900 -8.7221 38 1 1.7962 2.1114 -9.3666 39 1 3.4710 2.5968 -7.6317 40 1 3.5590 3.3032 -4.8650 41 1 3.6564 1.5374 -4.5975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577111977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:17 Heat of formation + Delta-G solvation = -6.664057 kcal Electronic energy + Delta-G solvation = -19015.016763 eV Core-core repulsion = 16278.936211 eV Total energy + Delta-G solvation = -2736.080552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02112 -38.38075 -36.70688 -34.24995 -32.56954 -32.26267 -30.24711 -28.20156 -27.98961 -25.58803 -24.80557 -22.65377 -21.75498 -21.19283 -20.85091 -18.29167 -17.14169 -17.00385 -16.60201 -16.09190 -15.76287 -15.64648 -15.03967 -14.88875 -14.21878 -14.09127 -13.90540 -13.72377 -13.68511 -13.58993 -12.91120 -12.78862 -12.73610 -12.39470 -12.30896 -12.10496 -12.00896 -11.77859 -11.61175 -11.56653 -11.45290 -11.22621 -10.77034 -10.51142 -9.66912 -9.35369 -8.93893 -8.07896 -6.19850 0.50038 0.52716 1.43495 1.44687 1.51764 2.43773 2.89830 3.20877 3.39867 3.68914 3.81496 4.04109 4.20376 4.22535 4.31986 4.41793 4.62117 4.66894 4.71995 4.77438 4.79674 4.83055 4.85513 4.90635 4.97077 5.05984 5.06189 5.29013 5.29999 5.34231 5.43115 5.45153 5.58620 5.61726 5.65491 5.73576 5.83063 5.84195 5.93159 6.17828 6.29919 6.53175 6.84059 7.07675 7.48997 8.97148 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042771 B = 0.003868 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.485264 B = 7237.635958 C = 7419.476631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C 0.222 3.778 4 H -0.038 1.038 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.075 3.925 15 C -0.072 4.072 16 C -0.061 4.061 17 C -0.112 4.112 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.074 4.074 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 2.780 -19.242 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.113 3.887 4 H -0.020 1.020 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.307 5.307 14 C -0.055 4.055 15 C -0.091 4.091 16 C -0.098 4.098 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.136 4.136 22 C -0.111 4.111 23 C -0.112 4.112 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.103 0.897 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.350 2.150 -19.274 19.535 hybrid contribution 0.656 0.690 1.504 1.780 sum -1.694 2.841 -17.770 18.076 Atomic orbital electron populations 1.21291 0.95990 0.98351 1.00681 1.21289 0.96306 0.97761 0.98158 1.18892 0.90901 0.92268 0.86625 1.02011 1.21446 1.31391 1.11994 0.91338 0.92349 1.25626 0.95400 0.95713 1.01550 1.70018 1.38483 1.24405 1.22824 0.85684 0.78900 0.78730 0.78747 1.19688 1.21323 1.19732 1.60554 1.47955 1.15890 1.06344 1.21898 0.93063 0.99450 0.91039 1.21728 0.94960 0.99541 0.92895 1.20892 0.99066 1.00342 0.89501 1.20922 0.94912 0.99358 0.95992 1.20914 0.99452 1.00989 0.92812 1.21359 0.97526 0.99803 0.95709 1.21370 0.93375 0.99586 1.00195 1.20918 1.00687 1.00833 0.91202 1.20796 0.95493 0.99980 0.94849 1.21058 0.97037 1.02711 0.90359 0.94915 0.95125 0.92517 0.96296 0.92724 0.93093 0.85115 0.96582 0.92663 0.90198 0.91328 0.91046 0.85462 0.83652 0.83443 0.84700 0.89706 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.46 71.98 0.68 -4.02 16 2 C -0.10 -4.72 5.58 30.60 0.17 -4.55 16 3 C 0.22 11.07 2.30 44.17 0.10 11.17 16 4 H -0.04 -2.12 7.84 -2.38 -0.02 -2.14 16 5 C -0.52 -28.02 7.33 25.60 0.19 -27.83 16 6 H 0.06 3.06 7.60 -2.91 -0.02 3.04 16 7 C 0.02 0.88 5.30 84.65 0.45 1.33 16 8 N -0.92 -52.77 11.34 21.45 0.24 -52.53 16 9 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.68 -27.53 5.44 -495.46 -2.70 -30.22 16 14 C 0.08 2.61 4.74 86.30 0.41 3.01 16 15 C -0.07 -2.03 3.28 -9.88 -0.03 -2.07 16 16 C -0.06 -1.73 6.25 30.52 0.19 -1.54 16 17 C -0.11 -2.93 6.14 -19.60 -0.12 -3.05 16 18 C -0.12 -2.81 10.04 22.30 0.22 -2.59 16 19 C -0.13 -2.37 10.05 22.24 0.22 -2.15 16 20 C -0.13 -2.30 10.05 22.24 0.22 -2.07 16 21 C -0.12 -2.44 10.04 22.30 0.22 -2.22 16 22 C -0.11 -2.74 6.14 -19.59 -0.12 -2.86 16 23 C -0.07 -1.81 6.32 30.52 0.19 -1.61 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.03 1.46 7.37 -2.39 -0.02 1.44 16 26 H 0.06 2.39 7.50 -2.39 -0.02 2.37 16 27 H 0.02 0.85 7.43 -2.38 -0.02 0.83 16 28 H 0.05 3.01 6.13 -2.39 -0.01 2.99 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.33 13.24 8.25 -89.70 -0.74 12.50 16 31 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 2.02 7.18 -2.39 -0.02 2.00 16 33 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 2.12 7.75 -2.39 -0.02 2.10 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 1.93 7.89 -2.39 -0.02 1.91 16 Total: -1.00 -59.43 326.84 2.84 -56.59 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.26 Total: 21.87 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.00 Total: -41.03 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.45 Total: -82.75 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -59.43 2.84 -56.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577111977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.930 kcal (2) G-P(sol) polarization free energy of solvation -59.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds