Wall clock time and date at job start Mon Mar 30 2020 00:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86796 * 120.00290 * 2 1 4 4 H 1.48507 * 109.47030 * 271.19463 * 3 2 1 5 5 H 1.48498 * 109.47371 * 31.19351 * 3 2 1 6 6 H 1.48502 * 109.47353 * 151.19892 * 3 2 1 7 7 C 1.40024 * 119.99489 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00138 * 339.92630 * 7 2 1 9 9 C 1.41399 * 119.99697 * 159.93320 * 7 2 1 10 10 C 1.40739 * 119.76383 * 332.05400 * 9 7 2 11 11 C 1.38225 * 119.17377 * 180.02562 * 10 9 7 12 12 C 1.38761 * 118.69167 * 0.02562 * 11 10 9 13 13 C 1.39827 * 119.45905 * 0.02562 * 12 11 10 14 14 C 1.48342 * 119.60160 * 180.02562 * 13 12 11 15 15 C 1.39782 * 120.91578 * 354.02361 * 14 13 12 16 16 C 1.38000 * 119.03431 * 179.77788 * 15 14 13 17 17 N 1.31911 * 120.91568 * 0.51254 * 16 15 14 18 18 C 1.31868 * 122.02865 * 359.73854 * 17 16 15 19 19 C 1.38190 * 120.86146 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 120.50479 * 179.97438 * 19 18 17 21 21 N 1.32230 * 120.79354 * 359.97438 * 13 12 11 22 22 H 0.97006 * 119.99568 * 0.02562 * 1 2 3 23 23 H 1.07989 * 120.41313 * 0.02562 * 10 9 7 24 24 H 1.08003 * 120.65542 * 179.97438 * 11 10 9 25 25 H 1.08001 * 120.27260 * 179.97438 * 12 11 10 26 26 H 1.07998 * 120.47922 * 0.02562 * 15 14 13 27 27 H 1.07993 * 119.53830 * 180.24652 * 16 15 14 28 28 H 1.08007 * 119.56857 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4638 2.0609 -1.3998 5 1 1.4519 2.6452 0.7251 6 1 3.5515 1.4329 0.6745 7 6 2.0075 -1.2127 0.0005 8 1 1.5166 -2.1195 0.3220 9 6 3.3571 -1.2501 -0.4196 10 6 3.8255 -0.3042 -1.3506 11 6 5.1469 -0.3524 -1.7533 12 6 5.9693 -1.3365 -1.2236 13 6 5.4449 -2.2488 -0.3028 14 6 6.3214 -3.3018 0.2659 15 6 7.6294 -3.4741 -0.1959 16 6 8.4125 -4.4629 0.3640 17 7 7.9391 -5.2456 1.3144 18 6 6.7100 -5.1208 1.7756 19 6 5.8597 -4.1536 1.2745 20 17 4.2431 -3.9980 1.8879 21 7 4.1772 -2.1835 0.0679 22 1 -0.4850 0.8401 -0.0004 23 1 3.1608 0.4497 -1.7454 24 1 5.5315 0.3614 -2.4668 25 1 7.0058 -1.3979 -1.5207 26 1 8.0227 -2.8400 -0.9766 27 1 9.4256 -4.6005 0.0161 28 1 6.3632 -5.7837 2.5546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243382004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:59 Heat of formation + Delta-G solvation = 62.905900 kcal Electronic energy + Delta-G solvation = -16208.763171 eV Core-core repulsion = 13443.483370 eV Total energy + Delta-G solvation = -2765.279802 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03260 -38.47433 -35.89525 -34.16309 -32.83408 -31.41428 -30.70053 -29.78138 -25.99469 -24.15973 -23.19637 -21.29835 -21.04227 -18.02492 -16.68099 -16.33077 -15.80715 -15.71320 -14.77241 -14.44493 -14.13819 -13.83214 -13.72733 -12.99897 -12.66186 -12.38315 -11.89565 -11.77919 -11.42628 -11.28470 -10.94274 -10.61569 -10.30240 -10.08259 -9.78888 -9.45545 -9.33060 -8.69468 -8.62237 -7.84902 -7.68504 -7.12618 -4.73827 0.96952 1.17096 2.39631 2.60092 2.68539 2.97199 3.09984 3.17704 3.81488 3.88884 4.38551 4.54524 4.67541 4.87339 5.12789 5.39344 5.45426 5.66353 5.78128 5.89139 6.07026 6.13393 6.31625 6.49512 6.64281 6.75420 6.95486 7.25104 7.32483 7.60284 7.98098 8.17962 8.31823 8.55928 9.43282 9.88706 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.029966 B = 0.007029 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.164441 B = 3982.575521 C = 4713.154409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.088 3.912 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.413 4.413 8 H 0.100 0.900 9 C 0.253 3.747 10 C -0.275 4.275 11 C -0.048 4.048 12 C -0.279 4.279 13 C 0.171 3.829 14 C 0.027 3.973 15 C -0.152 4.152 16 C 0.088 3.912 17 N -0.480 5.480 18 C 0.099 3.901 19 C -0.068 4.068 20 Cl -0.006 7.006 21 N -0.505 5.505 22 H 0.290 0.710 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.144 0.856 27 H 0.159 0.841 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -2.853 0.175 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.444 4.444 8 H 0.118 0.882 9 C 0.128 3.872 10 C -0.297 4.297 11 C -0.072 4.072 12 C -0.303 4.303 13 C 0.027 3.973 14 C 0.018 3.982 15 C -0.173 4.173 16 C -0.068 4.068 17 N -0.190 5.190 18 C -0.059 4.059 19 C -0.098 4.098 20 Cl 0.023 6.977 21 N -0.219 5.219 22 H 0.100 0.900 23 H 0.131 0.869 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.161 0.839 27 H 0.176 0.824 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.035 -3.969 1.194 10.857 hybrid contribution -0.091 2.166 -1.059 2.412 sum 9.944 -1.803 0.136 10.107 Atomic orbital electron populations 1.69634 1.08070 1.30706 1.32981 1.26114 0.94768 1.01654 0.90894 0.86341 0.80878 0.79679 0.79129 1.19234 1.21386 1.17310 1.19208 0.92050 0.96670 1.36452 0.88241 1.18592 0.92737 0.87178 0.88709 1.22101 0.96662 1.05821 1.05162 1.20903 0.93553 0.96017 0.96711 1.21178 0.99829 1.02070 1.07228 1.19287 0.91578 0.92516 0.93878 1.19167 0.93019 0.93173 0.92832 1.22271 0.93266 1.00004 1.01730 1.22632 0.99937 0.91506 0.92737 1.67658 1.13825 1.25790 1.11732 1.22694 0.88731 0.95735 0.98724 1.22346 0.90677 0.98466 0.98352 1.98438 1.17354 1.96667 1.85212 1.68676 1.01933 1.25932 1.25347 0.89964 0.86910 0.87469 0.87505 0.83866 0.82422 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.19 13.92 55.55 0.77 -19.41 15 2 C 0.09 2.22 5.38 -17.34 -0.09 2.13 15 3 Si 0.91 20.02 24.57 -169.99 -4.18 15.85 15 4 H -0.27 -5.56 6.45 56.52 0.36 -5.19 15 5 H -0.29 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.25 -5.72 7.07 56.52 0.40 -5.32 15 7 C -0.41 -11.04 9.78 -37.71 -0.37 -11.41 15 8 H 0.10 2.84 8.06 -52.49 -0.42 2.42 15 9 C 0.25 6.45 5.98 -85.01 -0.51 5.94 15 10 C -0.27 -6.41 7.35 -38.64 -0.28 -6.70 15 11 C -0.05 -0.98 10.15 -39.39 -0.40 -1.38 15 12 C -0.28 -5.52 9.49 -38.79 -0.37 -5.89 15 13 C 0.17 3.68 6.72 -82.94 -0.56 3.12 15 14 C 0.03 0.50 5.91 -104.56 -0.62 -0.11 15 15 C -0.15 -2.21 9.48 -39.09 -0.37 -2.58 15 16 C 0.09 1.16 11.17 -17.60 -0.20 0.96 15 17 N -0.48 -7.13 10.34 -13.30 -0.14 -7.27 15 18 C 0.10 1.50 10.98 -17.55 -0.19 1.31 15 19 C -0.07 -1.21 6.37 -38.99 -0.25 -1.46 15 20 Cl -0.01 -0.12 25.91 -51.86 -1.34 -1.46 15 21 N -0.51 -12.29 7.01 -7.68 -0.05 -12.34 15 22 H 0.29 6.63 8.29 -40.82 -0.34 6.29 15 23 H 0.11 2.58 4.47 -52.49 -0.23 2.35 15 24 H 0.11 1.83 8.06 -52.48 -0.42 1.41 15 25 H 0.11 1.73 6.30 -52.49 -0.33 1.40 15 26 H 0.14 1.75 6.35 -52.49 -0.33 1.42 15 27 H 0.16 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.16 2.01 8.06 -52.48 -0.42 1.59 15 LS Contribution 258.79 15.07 3.90 3.90 Total: -1.00 -28.02 258.79 -7.01 -35.03 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -1.76 Total: 1.80 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -4.21 Total: -16.08 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.58 Total: -39.03 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.18 Total: 15.85 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.34 Total: -1.46 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.02 -7.01 -35.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243382004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.931 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds